Wall clock time and date at job start Wed Apr 1 2020 02:11:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42893 * 113.99723 * 2 1 4 4 C 1.53003 * 109.47263 * 179.97438 * 3 2 1 5 5 N 1.46501 * 109.47010 * 65.71630 * 4 3 2 6 6 C 1.36939 * 119.99521 * 93.56578 * 5 4 3 7 7 H 1.08004 * 119.99583 * 216.58100 * 6 5 4 8 8 C 1.38810 * 120.00119 * 36.57902 * 6 5 4 9 9 N 1.31622 * 119.99657 * 214.01710 * 8 6 5 10 10 Si 1.86797 * 120.00280 * 34.02050 * 8 6 5 11 11 H 1.48500 * 109.47400 * 94.84037 * 10 8 6 12 12 H 1.48498 * 109.47155 * 214.84572 * 10 8 6 13 13 H 1.48505 * 109.46621 * 334.84381 * 10 8 6 14 14 C 1.46493 * 120.00489 * 273.56450 * 5 4 3 15 15 C 1.50700 * 109.47220 * 264.27403 * 14 5 4 16 16 C 1.36223 * 119.89177 * 261.22197 * 15 14 5 17 17 C 1.38951 * 121.24800 * 179.97438 * 16 15 14 18 18 C 1.38754 * 120.52609 * 0.02562 * 17 16 15 19 19 C 1.47414 * 120.39534 * 179.97438 * 18 17 16 20 20 O 1.21506 * 120.00068 * 185.00512 * 19 18 17 21 21 O 1.34764 * 119.99411 * 4.99382 * 19 18 17 22 22 C 1.45200 * 116.99625 * 180.02562 * 21 19 18 23 23 C 1.41634 * 119.21710 * 359.97438 * 18 17 16 24 24 C 1.40453 * 121.33673 * 180.02562 * 23 18 17 25 25 C 1.36685 * 118.16847 * 179.17609 * 24 23 18 26 26 C 1.39335 * 119.85963 * 0.79164 * 25 24 23 27 27 N 1.31066 * 121.71005 * 359.43794 * 26 25 24 28 28 C 1.33686 * 121.33994 * 0.02562 * 27 26 25 29 29 H 1.09000 * 109.46831 * 60.00889 * 1 2 3 30 30 H 1.08999 * 109.46815 * 180.02562 * 1 2 3 31 31 H 1.08991 * 109.47363 * 300.00413 * 1 2 3 32 32 H 1.08997 * 109.47344 * 59.99799 * 3 2 1 33 33 H 1.09003 * 109.47121 * 299.99428 * 3 2 1 34 34 H 1.09003 * 109.46709 * 305.71968 * 4 3 2 35 35 H 1.08993 * 109.47170 * 185.72238 * 4 3 2 36 36 H 0.97000 * 119.99731 * 180.02562 * 9 8 6 37 37 H 1.09005 * 109.46793 * 24.27096 * 14 5 4 38 38 H 1.08995 * 109.47385 * 144.27063 * 14 5 4 39 39 H 1.08001 * 119.37169 * 359.97438 * 16 15 14 40 40 H 1.07997 * 119.73287 * 180.02562 * 17 16 15 41 41 H 1.09003 * 109.47310 * 300.00141 * 22 21 19 42 42 H 1.09007 * 109.47357 * 59.99916 * 22 21 19 43 43 H 1.08998 * 109.47269 * 180.02562 * 22 21 19 44 44 H 1.07998 * 120.91359 * 359.97184 * 24 23 18 45 45 H 1.08001 * 120.07180 * 180.24391 * 25 24 23 46 46 H 1.08002 * 119.14789 * 179.45387 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1847 0.0006 5 7 3.9779 0.5797 -1.2581 6 6 4.3401 1.3771 -2.3108 7 1 4.1039 1.0777 -3.3213 8 6 5.0109 2.5701 -2.0792 9 7 4.7958 3.6081 -2.8594 10 14 6.2188 2.7024 -0.6606 11 1 7.5933 2.4325 -1.1538 12 1 6.1590 4.0702 -0.0854 13 1 5.8644 1.7096 0.3854 14 6 4.0330 -0.8782 -1.3906 15 6 5.4331 -1.3562 -1.1039 16 6 6.2817 -1.6286 -2.1341 17 6 7.5786 -2.0703 -1.9021 18 6 8.0421 -2.2458 -0.6061 19 6 9.4183 -2.7150 -0.3633 20 8 9.7880 -2.9533 0.7693 21 8 10.2662 -2.8799 -1.3977 22 6 11.6055 -3.3453 -1.0844 23 6 7.1774 -1.9687 0.4808 24 6 7.6004 -2.1303 1.8104 25 6 6.7181 -1.8278 2.8095 26 6 5.4344 -1.3890 2.4920 27 7 5.0433 -1.2447 1.2494 28 6 5.8617 -1.5136 0.2272 29 1 -0.3633 0.5137 -0.8901 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8899 32 1 1.6885 1.8464 0.8899 33 1 1.6886 1.8463 -0.8901 34 1 3.8499 0.5581 0.8353 35 1 3.9783 2.1754 0.1031 36 1 5.2647 4.4417 -2.6978 37 1 3.3413 -1.3338 -0.6820 38 1 3.7529 -1.1616 -2.4051 39 1 5.9400 -1.4988 -3.1504 40 1 8.2309 -2.2787 -2.7372 41 1 12.0913 -2.6324 -0.4182 42 1 11.5472 -4.3179 -0.5956 43 1 12.1835 -3.4346 -2.0042 44 1 8.5996 -2.4718 2.0371 45 1 7.0125 -1.9370 3.8429 46 1 4.7436 -1.1616 3.2906 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000930683486.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:11:26 Heat of formation + Delta-G solvation = -50.921049 kcal Electronic energy + Delta-G solvation = -31077.744831 eV Core-core repulsion = 26933.594244 eV Total energy + Delta-G solvation = -4144.150587 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.157 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.22496 -41.05857 -39.03058 -38.18488 -37.68347 -37.05227 -34.68367 -33.57323 -32.12391 -31.55331 -30.41729 -28.94498 -27.63079 -27.01144 -25.45918 -24.75132 -24.54729 -23.70511 -22.56670 -21.37415 -19.52979 -18.81485 -18.43066 -18.20087 -17.68043 -17.44962 -17.31859 -16.96747 -16.79372 -16.50480 -15.81654 -15.79854 -15.44180 -15.30564 -15.03162 -14.82651 -14.61390 -14.50330 -14.30501 -14.11590 -13.89379 -13.61831 -13.24520 -13.04019 -12.93341 -12.83157 -12.69363 -12.49765 -12.34729 -12.11401 -11.97133 -11.86364 -11.75160 -11.62685 -11.48781 -11.35546 -10.62353 -10.40995 -10.23438 -9.77071 -9.26797 -8.74981 -8.30426 -5.46905 -0.93695 -0.12906 0.59132 1.23369 1.35464 1.43788 1.46469 1.60090 2.07146 2.38391 2.93772 3.06615 3.10741 3.39243 3.54360 3.61860 3.78624 3.84282 3.85878 4.06436 4.16766 4.28323 4.32300 4.43299 4.43863 4.50674 4.53473 4.60967 4.65132 4.68108 4.69446 4.69734 4.82978 4.87341 4.88456 4.97130 5.01015 5.08887 5.21345 5.25954 5.31572 5.37321 5.54419 5.62789 5.86172 5.91704 6.19462 6.46788 6.59629 6.97576 7.00073 7.64096 8.13586 8.89519 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.011570 B = 0.004398 C = 0.003802 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2419.553663 B = 6365.298109 C = 7361.940828 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.394 6.394 3 C 0.057 3.943 4 C 0.144 3.856 5 N -0.583 5.583 6 C -0.247 4.247 7 H 0.055 0.945 8 C 0.011 3.989 9 N -0.918 5.918 10 Si 0.888 3.112 11 H -0.306 1.306 12 H -0.298 1.298 13 H -0.253 1.253 14 C 0.190 3.810 15 C -0.031 4.031 16 C -0.133 4.133 17 C -0.019 4.019 18 C -0.162 4.162 19 C 0.522 3.478 20 O -0.526 6.526 21 O -0.356 6.356 22 C 0.029 3.971 23 C -0.077 4.077 24 C -0.097 4.097 25 C -0.158 4.158 26 C 0.111 3.889 27 N -0.472 5.472 28 C 0.105 3.895 29 H 0.033 0.967 30 H 0.096 0.904 31 H 0.048 0.952 32 H 0.054 0.946 33 H 0.029 0.971 34 H 0.080 0.920 35 H 0.037 0.963 36 H 0.263 0.737 37 H 0.080 0.920 38 H 0.059 0.941 39 H 0.150 0.850 40 H 0.166 0.834 41 H 0.062 0.938 42 H 0.069 0.931 43 H 0.135 0.865 44 H 0.170 0.830 45 H 0.172 0.828 46 H 0.189 0.811 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.701 -14.231 8.126 17.048 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.313 6.313 3 C -0.021 4.021 4 C 0.019 3.981 5 N -0.302 5.302 6 C -0.377 4.377 7 H 0.073 0.927 8 C -0.188 4.188 9 N -0.560 5.560 10 Si 0.716 3.284 11 H -0.234 1.234 12 H -0.225 1.225 13 H -0.177 1.177 14 C 0.065 3.935 15 C -0.035 4.035 16 C -0.154 4.154 17 C -0.037 4.037 18 C -0.165 4.165 19 C 0.370 3.630 20 O -0.419 6.419 21 O -0.272 6.272 22 C -0.064 4.064 23 C -0.079 4.079 24 C -0.122 4.122 25 C -0.178 4.178 26 C -0.062 4.062 27 N -0.180 5.180 28 C -0.017 4.017 29 H 0.051 0.949 30 H 0.115 0.885 31 H 0.066 0.934 32 H 0.072 0.928 33 H 0.047 0.953 34 H 0.098 0.902 35 H 0.055 0.945 36 H 0.072 0.928 37 H 0.098 0.902 38 H 0.077 0.923 39 H 0.167 0.833 40 H 0.184 0.816 41 H 0.080 0.920 42 H 0.087 0.913 43 H 0.153 0.847 44 H 0.187 0.813 45 H 0.190 0.810 46 H 0.206 0.794 Dipole moment (debyes) X Y Z Total from point charges 4.088 -13.995 8.084 16.672 hybrid contribution 1.698 0.733 0.609 1.947 sum 5.786 -13.263 8.694 16.881 Atomic orbital electron populations 1.22834 0.80860 1.03223 0.99918 1.87886 1.20249 1.27883 1.95325 1.23054 0.95879 0.84483 0.98726 1.21367 0.90911 0.96652 0.89207 1.44149 1.73753 1.00627 1.11689 1.18666 1.30357 1.00444 0.88215 0.92702 1.25755 0.99231 0.95989 0.97864 1.70110 1.41635 1.01488 1.42752 0.86666 0.81816 0.76750 0.83135 1.23437 1.22477 1.17666 1.20035 0.89559 0.83569 1.00387 1.21249 1.00920 0.90549 0.90814 1.21002 0.93403 1.00567 1.00404 1.21865 0.95336 0.90416 0.96105 1.18958 0.91484 1.11460 0.94591 1.20958 0.85728 0.73561 0.82792 1.90578 1.77954 1.49550 1.23769 1.86559 1.25595 1.78013 1.37026 1.23629 0.78013 0.99894 1.04842 1.18786 0.94104 1.00252 0.94786 1.22532 1.02553 0.96142 0.91022 1.22380 0.94274 0.99139 1.01985 1.23613 0.95535 0.93353 0.93683 1.68019 1.35610 1.14063 1.00300 1.18790 0.89880 0.99192 0.93799 0.94854 0.88510 0.93383 0.92815 0.95259 0.90155 0.94452 0.92788 0.90171 0.92280 0.83263 0.81614 0.91963 0.91263 0.84708 0.81309 0.81021 0.79436 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.74 11.01 113.37 1.25 1.99 16 2 O -0.39 -14.12 9.33 -148.98 -1.39 -15.51 16 3 C 0.06 2.21 6.28 71.98 0.45 2.66 16 4 C 0.14 6.32 4.38 86.38 0.38 6.69 16 5 N -0.58 -27.10 2.04 -706.35 -1.44 -28.54 16 6 C -0.25 -13.35 9.77 84.03 0.82 -12.53 16 7 H 0.06 3.20 8.06 -2.91 -0.02 3.18 16 8 C 0.01 0.61 5.01 84.86 0.43 1.03 16 9 N -0.92 -55.23 13.97 21.65 0.30 -54.93 16 10 Si 0.89 45.90 26.28 68.60 1.80 47.71 16 11 H -0.31 -16.37 7.11 99.48 0.71 -15.67 16 12 H -0.30 -15.37 7.11 99.48 0.71 -14.67 16 13 H -0.25 -12.71 5.92 99.48 0.59 -12.13 16 14 C 0.19 7.67 5.24 85.63 0.45 8.12 16 15 C -0.03 -1.20 5.44 -19.73 -0.11 -1.30 16 16 C -0.13 -4.53 9.53 21.97 0.21 -4.32 16 17 C -0.02 -0.58 9.60 22.56 0.22 -0.36 16 18 C -0.16 -5.35 5.90 -19.90 -0.12 -5.47 16 19 C 0.52 15.61 7.86 70.24 0.55 16.17 16 20 O -0.53 -16.61 13.19 19.82 0.26 -16.35 16 21 O -0.36 -8.73 9.82 -56.75 -0.56 -9.29 16 22 C 0.03 0.47 10.57 113.37 1.20 1.67 16 23 C -0.08 -2.74 5.76 -21.10 -0.12 -2.86 16 24 C -0.10 -3.01 9.29 22.45 0.21 -2.80 16 25 C -0.16 -4.03 10.04 22.17 0.22 -3.81 16 26 C 0.11 3.10 11.15 85.07 0.95 4.05 16 27 N -0.47 -16.98 7.31 -188.68 -1.38 -18.36 16 28 C 0.10 4.00 6.58 40.28 0.27 4.26 16 29 H 0.03 0.89 8.14 -2.39 -0.02 0.87 16 30 H 0.10 2.13 8.14 -2.39 -0.02 2.11 16 31 H 0.05 1.10 8.14 -2.39 -0.02 1.08 16 32 H 0.05 1.79 8.14 -2.39 -0.02 1.77 16 33 H 0.03 1.25 8.14 -2.39 -0.02 1.23 16 34 H 0.08 3.40 5.70 -2.39 -0.01 3.39 16 35 H 0.04 1.78 4.49 -2.39 -0.01 1.77 16 36 H 0.26 15.15 8.31 -92.71 -0.77 14.38 16 37 H 0.08 3.21 6.61 -2.38 -0.02 3.20 16 38 H 0.06 2.31 7.92 -2.39 -0.02 2.29 16 39 H 0.15 4.64 8.00 -2.91 -0.02 4.61 16 40 H 0.17 3.94 7.60 -2.91 -0.02 3.92 16 41 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 42 H 0.07 1.05 8.14 -2.38 -0.02 1.03 16 43 H 0.13 1.28 8.14 -2.39 -0.02 1.26 16 44 H 0.17 5.12 4.96 -3.31 -0.02 5.11 16 45 H 0.17 2.89 8.06 -2.91 -0.02 2.87 16 46 H 0.19 3.78 8.06 -2.91 -0.02 3.76 16 Total: -1.00 -71.44 378.37 5.73 -65.71 By element: Atomic # 1 Polarization: 15.49 SS G_CDS: 0.89 Total: 16.38 kcal Atomic # 6 Polarization: 5.94 SS G_CDS: 7.25 Total: 13.19 kcal Atomic # 7 Polarization: -99.31 SS G_CDS: -2.52 Total: -101.83 kcal Atomic # 8 Polarization: -39.46 SS G_CDS: -1.69 Total: -41.14 kcal Atomic # 14 Polarization: 45.90 SS G_CDS: 1.80 Total: 47.71 kcal Total: -71.44 5.73 -65.71 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930683486.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.788 kcal (2) G-P(sol) polarization free energy of solvation -71.440 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.652 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.731 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.709 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.921 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds