Wall clock time and date at job start Wed Apr 1 2020 02:12:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42902 * 113.99586 * 2 1 4 4 C 1.53005 * 109.46719 * 179.97438 * 3 2 1 5 5 N 1.46499 * 109.47514 * 64.99757 * 4 3 2 6 6 C 1.46504 * 119.99639 * 89.99620 * 5 4 3 7 7 C 1.50704 * 109.47027 * 82.20147 * 6 5 4 8 8 H 1.07998 * 120.00100 * 232.43619 * 7 6 5 9 9 C 1.37880 * 119.99684 * 52.43207 * 7 6 5 10 10 N 1.31513 * 120.00378 * 4.41330 * 9 7 6 11 11 Si 1.86795 * 119.99669 * 184.41423 * 9 7 6 12 12 H 1.48507 * 109.47175 * 359.97438 * 11 9 7 13 13 H 1.48507 * 109.47465 * 119.99956 * 11 9 7 14 14 H 1.48503 * 109.47285 * 239.99996 * 11 9 7 15 15 C 1.34776 * 119.99877 * 270.00011 * 5 4 3 16 16 O 1.21282 * 119.99940 * 3.99934 * 15 5 4 17 17 C 1.50701 * 119.99762 * 183.99234 * 15 5 4 18 18 H 1.08998 * 115.56216 * 354.29111 * 17 15 5 19 19 C 1.53130 * 117.51444 * 140.11433 * 17 15 5 20 20 C 1.52333 * 59.82941 * 107.44180 * 19 17 15 21 21 C 1.50546 * 121.92333 * 111.22369 * 20 19 17 22 22 C 1.37677 * 133.31989 * 323.74186 * 21 20 19 23 23 C 1.38371 * 119.99098 * 179.97438 * 22 21 20 24 24 C 1.38302 * 119.83062 * 359.97438 * 23 22 21 25 25 C 1.37937 * 120.35046 * 359.97438 * 24 23 22 26 26 C 1.39086 * 105.97398 * 143.72658 * 21 20 19 27 27 N 1.39622 * 110.25318 * 359.97438 * 26 21 20 28 28 C 1.34604 * 112.21271 * 0.02562 * 27 26 21 29 29 O 1.21291 * 126.61494 * 180.02562 * 28 27 26 30 30 H 1.09003 * 109.47548 * 300.00173 * 1 2 3 31 31 H 1.09006 * 109.47076 * 60.00234 * 1 2 3 32 32 H 1.09003 * 109.46987 * 179.97438 * 1 2 3 33 33 H 1.09000 * 109.47521 * 59.99922 * 3 2 1 34 34 H 1.08997 * 109.47624 * 299.99413 * 3 2 1 35 35 H 1.09001 * 109.47000 * 304.99644 * 4 3 2 36 36 H 1.09008 * 109.47020 * 184.99900 * 4 3 2 37 37 H 1.08992 * 109.47578 * 322.19770 * 6 5 4 38 38 H 1.09004 * 109.46634 * 202.19899 * 6 5 4 39 39 H 0.96997 * 119.99874 * 175.29108 * 10 9 7 40 40 H 1.08999 * 117.51973 * 214.88000 * 19 17 15 41 41 H 1.09007 * 117.51542 * 0.02562 * 19 17 15 42 42 H 1.08003 * 120.00679 * 0.02562 * 22 21 20 43 43 H 1.07996 * 120.08832 * 180.02562 * 23 22 21 44 44 H 1.08000 * 119.82833 * 179.97438 * 24 23 22 45 45 H 1.07998 * 119.90996 * 180.02562 * 25 24 23 46 46 H 0.96998 * 123.88891 * 180.02562 * 27 26 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 7 3.9767 0.5640 -1.2508 6 6 4.2883 1.3998 -2.4130 7 6 5.6903 1.9374 -2.2837 8 1 5.8727 2.9978 -2.3767 9 6 6.7399 1.0753 -2.0466 10 7 6.5315 -0.2229 -2.0196 11 14 8.4581 1.7515 -1.7638 12 1 8.4262 3.2340 -1.8450 13 1 8.9374 1.3391 -0.4201 14 1 9.3767 1.2191 -2.8019 15 6 4.0960 -0.7760 -1.3330 16 8 3.7691 -1.4725 -0.3954 17 6 4.6354 -1.4088 -2.5898 18 1 4.8152 -0.7261 -3.4203 19 6 5.5879 -2.5972 -2.4309 20 6 4.1644 -2.8178 -2.9265 21 6 3.8706 -3.2421 -4.3407 22 6 4.4464 -2.9440 -5.5553 23 6 3.9419 -3.5036 -6.7158 24 6 2.8596 -4.3623 -6.6516 25 6 2.2807 -4.6643 -5.4365 26 6 2.7815 -4.1037 -4.2634 27 7 2.3756 -4.2518 -2.9357 28 6 3.1338 -3.5313 -2.0885 29 8 3.0120 -3.4688 -0.8833 30 1 -0.3634 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8901 32 1 -0.3633 -1.0277 -0.0005 33 1 1.6885 1.8465 0.8899 34 1 1.6886 1.8464 -0.8900 35 1 3.8507 0.5686 0.8427 36 1 3.9784 2.1767 0.0902 37 1 3.5840 2.2301 -2.4627 38 1 4.2105 0.8025 -3.3214 39 1 7.2797 -0.8322 -1.9211 40 1 6.3949 -2.6965 -3.1568 41 1 5.8238 -2.9215 -1.4173 42 1 5.2922 -2.2741 -5.6021 43 1 4.3926 -3.2712 -7.6693 44 1 2.4657 -4.7988 -7.5575 45 1 1.4361 -5.3361 -5.3946 46 1 1.6329 -4.8096 -2.6562 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000931895394.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:12:16 Heat of formation + Delta-G solvation = -31.027731 kcal Electronic energy + Delta-G solvation = -32038.462666 eV Core-core repulsion = 27895.174718 eV Total energy + Delta-G solvation = -4143.287948 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.157 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.52441 -40.33990 -39.17247 -38.58874 -36.86154 -36.47000 -36.19876 -34.08543 -31.62142 -31.10978 -30.03422 -28.91017 -27.32687 -26.66019 -25.11159 -24.71621 -23.37033 -22.72387 -22.29296 -21.04166 -19.37330 -18.56909 -18.40898 -18.01961 -17.37408 -17.31340 -16.88346 -16.58381 -16.48171 -16.24672 -16.17866 -15.80628 -15.22734 -15.01608 -14.78549 -14.72775 -14.60656 -14.08049 -13.80371 -13.68408 -13.45270 -13.36971 -12.94653 -12.86708 -12.84322 -12.79541 -12.59124 -12.35528 -12.05303 -11.99870 -11.80628 -11.74534 -11.66112 -11.39385 -11.12482 -10.75820 -10.55963 -10.51121 -9.86948 -9.56484 -8.92918 -8.77672 -7.86759 -6.23998 0.30222 0.50042 1.43158 1.50621 1.55892 1.58059 2.11817 2.32694 2.46727 2.66542 2.97150 3.03082 3.25228 3.41037 3.53996 3.59909 3.88244 4.17561 4.20517 4.28871 4.30517 4.40797 4.44932 4.51349 4.53442 4.53723 4.57492 4.68977 4.73654 4.75947 4.80721 4.85085 4.93537 4.96126 5.10422 5.18164 5.26553 5.32818 5.47285 5.61251 5.70508 5.78112 5.79936 6.01370 6.15640 6.22919 6.24900 6.43909 6.82520 7.22914 7.26096 7.49735 8.08855 8.92560 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.009104 B = 0.005509 C = 0.003984 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3074.829702 B = 5081.221300 C = 7026.047598 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.403 6.403 3 C 0.053 3.947 4 C 0.127 3.873 5 N -0.590 5.590 6 C 0.231 3.769 7 C -0.555 4.555 8 H 0.058 0.942 9 C 0.043 3.957 10 N -0.876 5.876 11 Si 0.946 3.054 12 H -0.273 1.273 13 H -0.299 1.299 14 H -0.277 1.277 15 C 0.554 3.446 16 O -0.569 6.569 17 C -0.011 4.011 18 H 0.125 0.875 19 C -0.062 4.062 20 C -0.178 4.178 21 C -0.113 4.113 22 C -0.079 4.079 23 C -0.136 4.136 24 C -0.085 4.085 25 C -0.140 4.140 26 C 0.125 3.875 27 N -0.660 5.660 28 C 0.536 3.464 29 O -0.493 6.493 30 H 0.055 0.945 31 H 0.045 0.955 32 H 0.074 0.926 33 H 0.072 0.928 34 H 0.053 0.947 35 H 0.043 0.957 36 H 0.097 0.903 37 H 0.038 0.962 38 H 0.032 0.968 39 H 0.265 0.735 40 H 0.115 0.885 41 H 0.068 0.932 42 H 0.126 0.874 43 H 0.156 0.844 44 H 0.166 0.834 45 H 0.149 0.851 46 H 0.416 0.584 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.369 -4.766 -10.408 14.180 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.322 6.322 3 C -0.025 4.025 4 C 0.003 3.997 5 N -0.321 5.321 6 C 0.111 3.889 7 C -0.594 4.594 8 H 0.076 0.924 9 C -0.160 4.160 10 N -0.513 5.513 11 Si 0.774 3.226 12 H -0.197 1.197 13 H -0.226 1.226 14 H -0.203 1.203 15 C 0.344 3.656 16 O -0.448 6.448 17 C -0.033 4.033 18 H 0.142 0.858 19 C -0.101 4.101 20 C -0.183 4.183 21 C -0.116 4.116 22 C -0.097 4.097 23 C -0.155 4.155 24 C -0.103 4.103 25 C -0.161 4.161 26 C 0.029 3.971 27 N -0.305 5.305 28 C 0.323 3.677 29 O -0.365 6.365 30 H 0.074 0.926 31 H 0.064 0.936 32 H 0.093 0.907 33 H 0.090 0.910 34 H 0.071 0.929 35 H 0.062 0.938 36 H 0.115 0.885 37 H 0.057 0.943 38 H 0.050 0.950 39 H 0.077 0.923 40 H 0.133 0.867 41 H 0.087 0.913 42 H 0.144 0.856 43 H 0.173 0.827 44 H 0.183 0.817 45 H 0.167 0.833 46 H 0.255 0.745 Dipole moment (debyes) X Y Z Total from point charges -8.323 -5.298 -9.076 13.405 hybrid contribution 0.711 0.413 0.950 1.257 sum -7.612 -4.884 -8.125 12.158 Atomic orbital electron populations 1.22788 0.80915 1.02385 1.00556 1.88202 1.20261 1.28352 1.95364 1.23028 0.94098 0.84667 1.00666 1.21166 0.92299 0.98562 0.87714 1.48009 1.65378 1.05605 1.13125 1.19300 0.94381 0.90325 0.84886 1.21735 0.93046 0.94132 1.50467 0.92383 1.25575 1.01385 0.95352 0.93675 1.70040 1.30725 1.01680 1.48867 0.85716 0.81378 0.78587 0.76938 1.19731 1.22583 1.20308 1.19547 0.75459 0.82329 0.88314 1.90756 1.51210 1.62069 1.40815 1.21397 0.97804 0.86122 0.98007 0.85781 1.22224 0.88127 0.99344 1.00362 1.20922 0.99408 1.04541 0.93466 1.19172 0.98730 1.01172 0.92564 1.20493 0.99633 0.99205 0.90393 1.21366 0.97807 0.98362 0.97983 1.21265 0.95001 0.96647 0.97366 1.20673 1.02941 1.03238 0.89250 1.18518 0.95638 0.98114 0.84866 1.43583 1.34015 1.47044 1.05872 1.19857 0.82537 0.79012 0.86265 1.90894 1.71047 1.61430 1.13150 0.92606 0.93611 0.90730 0.90951 0.92926 0.93819 0.88539 0.94349 0.95016 0.92338 0.86672 0.91308 0.85576 0.82658 0.81690 0.83317 0.74453 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.92 11.01 113.37 1.25 2.17 16 2 O -0.40 -17.01 9.32 -137.41 -1.28 -18.29 16 3 C 0.05 1.92 6.28 71.98 0.45 2.37 16 4 C 0.13 5.42 5.86 86.38 0.51 5.93 16 5 N -0.59 -28.08 2.18 -826.12 -1.80 -29.89 16 6 C 0.23 10.51 5.62 85.63 0.48 11.00 16 7 C -0.56 -26.85 9.49 25.60 0.24 -26.61 16 8 H 0.06 2.78 7.82 -2.91 -0.02 2.76 16 9 C 0.04 2.08 5.33 84.66 0.45 2.53 16 10 N -0.88 -43.32 6.42 21.45 0.14 -43.18 16 11 Si 0.95 40.40 29.54 68.60 2.03 42.42 16 12 H -0.27 -11.46 7.11 99.48 0.71 -10.75 16 13 H -0.30 -13.42 7.11 99.48 0.71 -12.71 16 14 H -0.28 -11.51 7.11 99.48 0.71 -10.81 16 15 C 0.55 28.61 5.66 87.66 0.50 29.10 16 16 O -0.57 -33.04 11.50 25.18 0.29 -32.76 16 17 C -0.01 -0.49 3.22 -11.71 -0.04 -0.53 16 18 H 0.12 5.78 5.40 -2.39 -0.01 5.76 16 19 C -0.06 -2.68 7.74 30.42 0.24 -2.45 16 20 C -0.18 -7.39 2.40 -54.14 -0.13 -7.52 16 21 C -0.11 -3.80 6.12 -19.84 -0.12 -3.92 16 22 C -0.08 -2.15 10.03 22.17 0.22 -1.93 16 23 C -0.14 -2.69 10.07 22.32 0.22 -2.47 16 24 C -0.08 -1.45 10.02 22.21 0.22 -1.23 16 25 C -0.14 -2.93 10.07 22.46 0.23 -2.71 16 26 C 0.13 3.73 7.12 38.37 0.27 4.00 16 27 N -0.66 -22.04 5.90 -303.36 -1.79 -23.83 16 28 C 0.54 23.58 8.02 87.71 0.70 24.29 16 29 O -0.49 -26.12 14.49 20.66 0.30 -25.82 16 30 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 31 H 0.05 1.25 8.14 -2.38 -0.02 1.23 16 32 H 0.07 2.28 8.14 -2.39 -0.02 2.26 16 33 H 0.07 2.14 8.14 -2.39 -0.02 2.12 16 34 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 35 H 0.04 2.11 7.48 -2.39 -0.02 2.09 16 36 H 0.10 3.76 8.07 -2.38 -0.02 3.74 16 37 H 0.04 1.58 8.13 -2.39 -0.02 1.56 16 38 H 0.03 1.48 5.68 -2.38 -0.01 1.46 16 39 H 0.27 12.87 7.60 -92.71 -0.70 12.17 16 40 H 0.12 4.36 8.14 -2.39 -0.02 4.34 16 41 H 0.07 3.32 8.14 -2.38 -0.02 3.30 16 42 H 0.13 3.40 8.06 -2.91 -0.02 3.37 16 43 H 0.16 2.10 8.06 -2.91 -0.02 2.07 16 44 H 0.17 1.54 8.06 -2.91 -0.02 1.51 16 45 H 0.15 2.21 8.06 -2.91 -0.02 2.18 16 46 H 0.42 11.35 8.96 -92.71 -0.83 10.52 16 Total: -1.00 -71.79 373.06 3.82 -67.96 By element: Atomic # 1 Polarization: 31.08 SS G_CDS: 0.25 Total: 31.33 kcal Atomic # 6 Polarization: 26.35 SS G_CDS: 5.70 Total: 32.04 kcal Atomic # 7 Polarization: -93.44 SS G_CDS: -3.46 Total: -96.90 kcal Atomic # 8 Polarization: -76.17 SS G_CDS: -0.69 Total: -76.87 kcal Atomic # 14 Polarization: 40.40 SS G_CDS: 2.03 Total: 42.42 kcal Total: -71.79 3.82 -67.96 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000931895394.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.934 kcal (2) G-P(sol) polarization free energy of solvation -71.787 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.853 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.825 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.962 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.028 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds