Wall clock time and date at job start Wed Apr 1 2020 03:06:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86792 * 120.00100 * 2 1 4 4 H 1.48496 * 109.47747 * 240.00284 * 3 2 1 5 5 H 1.48503 * 109.47437 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.47046 * 120.00365 * 3 2 1 7 7 C 1.37879 * 119.99669 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99695 * 180.02562 * 7 2 1 9 9 C 1.50695 * 120.00466 * 359.97438 * 7 2 1 10 10 C 1.50697 * 109.47369 * 180.02562 * 9 7 2 11 11 C 1.38283 * 119.92714 * 90.00498 * 10 9 7 12 12 C 1.38119 * 120.06870 * 180.02562 * 11 10 9 13 13 C 1.38861 * 119.92940 * 359.97438 * 12 11 10 14 14 N 1.39951 * 120.07189 * 180.02562 * 13 12 11 15 15 C 1.34770 * 120.00200 * 144.35355 * 14 13 12 16 16 O 1.21593 * 119.99950 * 4.52044 * 15 14 13 17 17 N 1.34780 * 119.99882 * 184.52836 * 15 14 13 18 18 C 1.46819 * 120.13483 * 354.63388 * 17 15 14 19 19 C 1.53712 * 109.09787 * 236.33217 * 18 17 15 20 20 N 1.47045 * 107.36641 * 313.84932 * 19 18 17 21 21 C 1.33397 * 128.05782 * 234.47806 * 20 19 18 22 22 O 1.21587 * 123.14156 * 350.63786 * 21 20 19 23 23 N 1.34142 * 113.71152 * 170.62214 * 21 20 19 24 24 C 1.47175 * 109.18941 * 3.04758 * 23 21 20 25 25 C 1.47823 * 122.78057 * 51.97863 * 20 19 18 26 26 H 1.09002 * 111.59648 * 68.95440 * 25 20 19 27 27 C 1.47095 * 120.12993 * 174.73259 * 17 15 14 28 28 C 1.38870 * 119.86196 * 0.27510 * 13 12 11 29 29 C 1.38111 * 119.92530 * 359.47471 * 28 13 12 30 30 H 0.96991 * 119.99654 * 359.97438 * 1 2 3 31 31 H 1.09000 * 109.46851 * 60.00062 * 9 7 2 32 32 H 1.09002 * 109.47219 * 300.00605 * 9 7 2 33 33 H 1.07998 * 119.96751 * 359.97438 * 11 10 9 34 34 H 1.08000 * 120.03522 * 179.97438 * 12 11 10 35 35 H 0.96998 * 119.99539 * 324.35355 * 14 13 12 36 36 H 1.09000 * 109.50182 * 116.45763 * 18 17 15 37 37 H 1.08998 * 109.61547 * 356.27467 * 18 17 15 38 38 H 1.08997 * 109.87885 * 194.38920 * 19 18 17 39 39 H 1.08997 * 109.93886 * 73.34612 * 19 18 17 40 40 H 0.96998 * 125.39823 * 183.08227 * 23 21 20 41 41 H 1.09002 * 110.54075 * 243.53714 * 24 23 21 42 42 H 1.08994 * 110.54508 * 120.73449 * 24 23 21 43 43 H 1.09003 * 109.74327 * 2.96342 * 27 17 15 44 44 H 1.08997 * 109.74007 * 242.30235 * 27 17 15 45 45 H 1.07997 * 120.03857 * 179.69745 * 28 13 12 46 46 H 1.08004 * 119.96514 * 180.22891 * 29 28 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 1.2843 2.7465 0.0006 6 1 3.1030 1.6962 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 6 2.2303 -3.6446 -0.0005 11 6 2.6786 -4.1691 1.1979 12 6 3.5765 -5.2185 1.2013 13 6 4.0287 -5.7473 -0.0004 14 7 4.9381 -6.8111 -0.0004 15 6 4.8591 -7.7652 -0.9489 16 8 4.0515 -7.6596 -1.8517 17 7 5.6751 -8.8366 -0.8967 18 6 6.7294 -8.9111 0.1224 19 6 8.0872 -9.1045 -0.5718 20 7 7.9153 -10.1539 -1.5874 21 6 8.6171 -11.2787 -1.7346 22 8 9.6357 -11.5128 -1.1132 23 7 8.0939 -12.1275 -2.6319 24 6 6.9097 -11.5092 -3.2495 25 6 6.8438 -10.1150 -2.6050 26 1 7.0068 -9.3166 -3.3290 27 6 5.5144 -9.9350 -1.8618 28 6 3.5807 -5.2150 -1.2022 29 6 2.6788 -4.1690 -1.1988 30 1 -0.4849 0.8400 0.0004 31 1 0.6241 -2.5567 -0.8903 32 1 0.6247 -2.5571 0.8896 33 1 2.3268 -3.7571 2.1322 34 1 3.9265 -5.6275 2.1376 35 1 5.6253 -6.8616 0.6823 36 1 6.5357 -9.7542 0.7855 37 1 6.7444 -7.9879 0.7016 38 1 8.8357 -9.4139 0.1576 39 1 8.3967 -8.1745 -1.0486 40 1 8.4407 -13.0091 -2.8402 41 1 6.0126 -12.0821 -3.0145 42 1 7.0402 -11.4263 -4.3284 43 1 4.7257 -9.6881 -2.5726 44 1 5.2601 -10.8543 -1.3343 45 1 3.9343 -5.6209 -2.1385 46 1 2.3271 -3.7570 -2.1332 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000932575234.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:06:41 Heat of formation + Delta-G solvation = -16.634078 kcal Electronic energy + Delta-G solvation = -29288.862784 eV Core-core repulsion = 25178.491742 eV Total energy + Delta-G solvation = -4110.371042 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.164 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.52175 -41.57752 -39.85483 -38.18008 -36.91463 -36.32690 -34.99401 -34.41198 -32.61092 -31.83763 -31.72280 -29.56721 -28.42023 -26.58475 -25.07423 -24.79019 -23.76761 -22.97976 -22.28620 -21.60481 -20.58395 -19.43478 -18.67137 -18.48123 -18.25416 -17.48081 -17.09846 -16.85273 -16.67839 -16.41808 -15.96843 -15.88137 -15.65901 -15.20825 -15.11218 -14.89101 -14.58102 -14.48961 -14.35317 -14.21928 -14.09162 -13.66625 -13.28021 -13.19605 -13.12440 -12.80407 -12.58814 -12.54617 -12.50121 -12.41426 -12.02775 -11.67190 -11.50441 -11.39337 -11.20954 -10.86403 -10.57752 -10.57236 -10.12007 -9.71711 -9.40799 -8.80817 -8.15798 -6.30472 0.51495 0.62125 1.23348 1.41472 1.44259 1.52391 1.70982 1.94626 2.07844 2.42035 2.68849 2.93389 3.04859 3.13166 3.42309 3.59148 3.65136 3.95138 4.06988 4.09472 4.14462 4.20438 4.42326 4.44573 4.48316 4.61667 4.63220 4.67006 4.70388 4.77055 4.77873 4.87210 4.98943 5.16852 5.25001 5.35789 5.38770 5.46130 5.52179 5.62295 5.65377 5.78239 5.79979 6.12664 6.16001 6.16538 6.29546 6.43844 6.76398 6.82192 7.37661 7.39986 7.52029 8.91755 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.027735 B = 0.001890 C = 0.001864 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1009.325593 B =14809.105643 C =15014.152411 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.002 3.998 3 Si 0.966 3.034 4 H -0.270 1.270 5 H -0.282 1.282 6 H -0.265 1.265 7 C -0.526 4.526 8 H 0.056 0.944 9 C 0.057 3.943 10 C -0.076 4.076 11 C -0.114 4.114 12 C -0.127 4.127 13 C 0.136 3.864 14 N -0.668 5.668 15 C 0.704 3.296 16 O -0.607 6.607 17 N -0.621 5.621 18 C 0.096 3.904 19 C 0.135 3.865 20 N -0.631 5.631 21 C 0.694 3.306 22 O -0.638 6.638 23 N -0.733 5.733 24 C 0.103 3.897 25 C 0.104 3.896 26 H 0.102 0.898 27 C 0.123 3.877 28 C -0.119 4.119 29 C -0.121 4.121 30 H 0.265 0.735 31 H -0.001 1.001 32 H 0.006 0.994 33 H 0.125 0.875 34 H 0.158 0.842 35 H 0.420 0.580 36 H 0.091 0.909 37 H 0.113 0.887 38 H 0.104 0.896 39 H 0.081 0.919 40 H 0.437 0.563 41 H 0.110 0.890 42 H 0.111 0.889 43 H 0.104 0.896 44 H 0.091 0.909 45 H 0.128 0.872 46 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.489 -26.154 -2.522 31.021 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.196 4.196 3 Si 0.790 3.210 4 H -0.195 1.195 5 H -0.207 1.207 6 H -0.190 1.190 7 C -0.564 4.564 8 H 0.074 0.926 9 C 0.020 3.980 10 C -0.076 4.076 11 C -0.133 4.133 12 C -0.147 4.147 13 C 0.041 3.959 14 N -0.319 5.319 15 C 0.406 3.594 16 O -0.486 6.486 17 N -0.357 5.357 18 C -0.027 4.027 19 C 0.012 3.988 20 N -0.369 5.369 21 C 0.395 3.605 22 O -0.521 6.521 23 N -0.395 5.395 24 C -0.022 4.022 25 C -0.001 4.001 26 H 0.120 0.880 27 C 0.000 4.000 28 C -0.139 4.139 29 C -0.140 4.140 30 H 0.074 0.926 31 H 0.017 0.983 32 H 0.024 0.976 33 H 0.143 0.857 34 H 0.176 0.824 35 H 0.261 0.739 36 H 0.109 0.891 37 H 0.130 0.870 38 H 0.123 0.877 39 H 0.099 0.901 40 H 0.281 0.719 41 H 0.128 0.872 42 H 0.130 0.870 43 H 0.122 0.878 44 H 0.109 0.891 45 H 0.146 0.854 46 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 16.343 -26.023 -2.746 30.852 hybrid contribution 0.339 0.843 0.011 0.909 sum 16.682 -25.180 -2.735 30.329 Atomic orbital electron populations 1.70082 1.07683 1.27940 1.51383 1.25954 0.95788 1.03160 0.94711 0.85487 0.78262 0.78058 0.79175 1.19457 1.20728 1.19003 1.21361 0.93129 0.91153 1.50773 0.92569 1.18087 0.92917 0.91246 0.95773 1.20399 0.97728 0.95660 0.93843 1.20953 0.98111 0.96733 0.97456 1.20999 0.98408 0.98093 0.97197 1.17327 0.94880 0.90099 0.93558 1.42446 1.34368 1.22862 1.32253 1.15968 0.81326 0.80017 0.82076 1.90936 1.41753 1.78880 1.36997 1.47160 1.34031 1.19129 1.35427 1.22294 0.85547 1.04925 0.89935 1.21979 0.97430 0.89427 0.89975 1.47384 1.33946 1.21457 1.34123 1.15994 0.82528 0.81333 0.80686 1.90932 1.26827 1.79636 1.54668 1.45191 1.31569 1.19681 1.43101 1.22495 0.89589 0.90467 0.99624 1.22780 0.87438 0.99509 0.90374 0.88000 1.22110 0.96987 0.88984 0.91958 1.21104 0.98993 0.95640 0.98174 1.20925 0.98644 0.96836 0.97593 0.92640 0.98301 0.97564 0.85696 0.82431 0.73880 0.89082 0.86962 0.87743 0.90105 0.71942 0.87196 0.87050 0.87815 0.89101 0.85412 0.87335 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.45 13.29 21.45 0.28 -56.16 16 2 C 0.00 0.11 5.46 84.65 0.46 0.57 16 3 Si 0.97 44.29 29.54 68.60 2.03 46.32 16 4 H -0.27 -11.98 7.11 99.48 0.71 -11.28 16 5 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 6 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 7 C -0.53 -30.14 9.09 25.60 0.23 -29.91 16 8 H 0.06 3.14 7.74 -2.91 -0.02 3.12 16 9 C 0.06 3.07 5.10 29.10 0.15 3.22 16 10 C -0.08 -3.38 5.07 -19.84 -0.10 -3.48 16 11 C -0.11 -4.23 9.69 22.25 0.22 -4.01 16 12 C -0.13 -3.62 9.97 22.39 0.22 -3.40 16 13 C 0.14 3.97 6.28 38.15 0.24 4.21 16 14 N -0.67 -13.64 5.24 -317.17 -1.66 -15.30 16 15 C 0.70 15.59 8.12 179.06 1.45 17.04 16 16 O -0.61 -18.70 13.20 -4.01 -0.05 -18.75 16 17 N -0.62 -8.61 2.92 -835.39 -2.44 -11.05 16 18 C 0.10 0.78 6.55 86.56 0.57 1.35 16 19 C 0.13 1.40 7.09 86.52 0.61 2.02 16 20 N -0.63 -8.31 2.98 -810.51 -2.42 -10.72 16 21 C 0.69 12.38 8.64 179.68 1.55 13.93 16 22 O -0.64 -17.50 17.61 -3.99 -0.07 -17.57 16 23 N -0.73 -7.06 6.39 -477.89 -3.05 -10.11 16 24 C 0.10 0.40 7.66 86.50 0.66 1.06 16 25 C 0.10 0.91 4.14 45.11 0.19 1.10 16 26 H 0.10 0.97 8.14 -2.39 -0.02 0.95 16 27 C 0.12 1.31 5.87 86.39 0.51 1.82 16 28 C -0.12 -4.23 8.69 22.39 0.19 -4.03 16 29 C -0.12 -5.03 9.69 22.25 0.22 -4.82 16 30 H 0.26 15.09 8.31 -92.71 -0.77 14.32 16 31 H 0.00 -0.08 8.08 -2.39 -0.02 -0.10 16 32 H 0.01 0.35 8.08 -2.39 -0.02 0.33 16 33 H 0.13 4.47 8.06 -2.91 -0.02 4.45 16 34 H 0.16 3.11 8.06 -2.91 -0.02 3.08 16 35 H 0.42 5.14 6.24 -92.71 -0.58 4.56 16 36 H 0.09 0.62 8.14 -2.39 -0.02 0.60 16 37 H 0.11 0.46 5.54 -2.39 -0.01 0.45 16 38 H 0.10 1.15 7.83 -2.39 -0.02 1.13 16 39 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 40 H 0.44 2.88 8.96 -92.71 -0.83 2.05 16 41 H 0.11 0.00 7.56 -2.39 -0.02 -0.01 16 42 H 0.11 0.02 8.14 -2.39 -0.02 0.00 16 43 H 0.10 1.38 6.95 -2.39 -0.02 1.36 16 44 H 0.09 0.73 7.84 -2.39 -0.02 0.71 16 45 H 0.13 4.56 6.29 -2.91 -0.02 4.54 16 46 H 0.11 4.59 8.06 -2.91 -0.02 4.57 16 Total: -1.00 -83.46 375.78 -0.38 -83.84 By element: Atomic # 1 Polarization: 13.20 SS G_CDS: -0.37 Total: 12.83 kcal Atomic # 6 Polarization: -10.70 SS G_CDS: 7.37 Total: -3.33 kcal Atomic # 7 Polarization: -94.06 SS G_CDS: -9.28 Total: -103.34 kcal Atomic # 8 Polarization: -36.19 SS G_CDS: -0.12 Total: -36.32 kcal Atomic # 14 Polarization: 44.29 SS G_CDS: 2.03 Total: 46.32 kcal Total: -83.46 -0.38 -83.84 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932575234.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.206 kcal (2) G-P(sol) polarization free energy of solvation -83.461 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.255 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.379 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.840 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.634 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds