Wall clock time and date at job start Wed Apr 1 2020 02:17:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34712 * 117.00011 * 2 1 4 4 O 1.21467 * 119.99904 * 0.02562 * 3 2 1 5 5 C 1.47741 * 119.99846 * 180.02562 * 3 2 1 6 6 C 1.39654 * 120.05602 * 359.97006 * 5 3 2 7 7 C 1.38068 * 119.95465 * 180.46007 * 6 5 3 8 8 C 1.38159 * 119.87572 * 359.90605 * 7 6 5 9 9 C 1.38314 * 120.68098 * 359.28292 * 8 7 6 10 10 C 1.38531 * 120.03479 * 1.19068 * 9 8 7 11 11 O 1.36192 * 119.87694 * 182.75484 * 9 8 7 12 12 C 1.43287 * 115.33132 * 68.66567 * 11 9 8 13 13 C 1.51357 * 110.71971 * 274.34529 * 12 11 9 14 14 N 1.46040 * 113.59905 * 65.19454 * 13 12 11 15 15 C 1.46894 * 110.99992 * 56.37683 * 14 13 12 16 16 C 1.52999 * 109.47262 * 66.05061 * 15 14 13 17 17 H 1.09009 * 109.46734 * 304.99523 * 16 15 14 18 18 C 1.47193 * 109.47535 * 64.99686 * 16 15 14 19 19 N 9.86392 * 157.36256 * 279.54923 * 2 1 3 20 20 C 1.52997 * 109.47116 * 185.00035 * 16 15 14 21 21 C 1.50701 * 109.47273 * 174.99838 * 20 16 15 22 22 H 1.08000 * 119.99590 * 359.97438 * 21 20 16 23 23 C 1.37873 * 120.00114 * 179.97438 * 21 20 16 24 24 N 1.31516 * 120.00392 * 359.97438 * 23 21 20 25 25 Si 1.86801 * 120.00098 * 179.97438 * 23 21 20 26 26 H 1.48501 * 109.47227 * 90.00010 * 25 23 21 27 27 H 1.48499 * 109.47505 * 210.00380 * 25 23 21 28 28 H 1.48506 * 109.47041 * 329.99994 * 25 23 21 29 29 C 1.46692 * 112.58250 * 291.24344 * 14 13 12 30 30 H 1.09008 * 109.47211 * 59.99869 * 1 2 3 31 31 H 1.08995 * 109.47600 * 179.97438 * 1 2 3 32 32 H 1.09003 * 109.47310 * 300.00303 * 1 2 3 33 33 H 1.08000 * 120.02471 * 0.49483 * 6 5 3 34 34 H 1.07998 * 120.06655 * 179.97438 * 7 6 5 35 35 H 1.07996 * 120.22158 * 179.13615 * 10 9 8 36 36 H 1.09002 * 109.22171 * 154.03589 * 12 11 9 37 37 H 1.09003 * 109.22209 * 34.65213 * 12 11 9 38 38 H 1.09008 * 108.65120 * 186.25663 * 13 12 11 39 39 H 1.09003 * 108.65799 * 304.26024 * 13 12 11 40 40 H 1.09004 * 109.47133 * 186.04554 * 15 14 13 41 41 H 1.09001 * 109.47455 * 306.04776 * 15 14 13 42 42 H 1.09002 * 109.47137 * 294.99360 * 20 16 15 43 43 H 1.08997 * 109.47356 * 54.99596 * 20 16 15 44 44 H 0.96995 * 120.00513 * 179.97438 * 24 23 21 45 45 H 1.08997 * 109.57678 * 204.15221 * 29 14 13 46 46 H 1.08996 * 109.58240 * 324.55972 * 29 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0636 1.2003 0.0000 4 8 1.4020 2.2190 0.0005 5 6 3.5390 1.2776 -0.0006 6 6 4.3007 0.1071 -0.0005 7 6 5.6793 0.1817 0.0086 8 6 6.3017 1.4151 0.0156 9 6 5.5579 2.5811 -0.0013 10 6 4.1739 2.5207 -0.0005 11 8 6.1882 3.7873 -0.0508 12 6 6.8619 4.0769 -1.2818 13 6 8.2595 3.4959 -1.2770 14 7 8.2858 2.0364 -1.2355 15 6 7.5264 1.4641 -2.3552 16 6 8.2266 1.8033 -3.6726 17 1 8.3610 2.8827 -3.7451 18 6 9.5406 1.1414 -3.7145 19 7 10.5560 0.6298 -3.7440 20 6 7.3723 1.3159 -4.8445 21 6 7.9999 1.7573 -6.1415 22 1 8.9163 2.3288 -6.1309 23 6 7.4044 1.4317 -7.3415 24 7 6.2887 0.7353 -7.3545 25 14 8.1820 1.9795 -8.9492 26 1 9.1293 0.9378 -9.4211 27 1 7.1212 2.1822 -9.9685 28 1 8.9136 3.2541 -8.7362 29 6 7.8159 1.5007 0.0468 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3634 0.5139 0.8900 33 1 3.8117 -0.8559 -0.0081 34 1 6.2701 -0.7223 0.0091 35 1 3.5901 3.4293 0.0004 36 1 6.9228 5.1574 -1.4120 37 1 6.2975 3.6472 -2.1095 38 1 8.7785 3.8287 -2.1760 39 1 8.7927 3.8774 -0.4062 40 1 7.4715 0.3815 -2.2413 41 1 6.5190 1.8804 -2.3615 42 1 7.3117 0.2278 -4.8221 43 1 6.3704 1.7373 -4.7637 44 1 5.8695 0.5065 -8.1987 45 1 8.2348 0.5067 0.2029 46 1 8.1278 2.1619 0.8552 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000934431601.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:17:21 Heat of formation + Delta-G solvation = -61.284794 kcal Electronic energy + Delta-G solvation = -30259.208254 eV Core-core repulsion = 26114.608261 eV Total energy + Delta-G solvation = -4144.599993 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.157 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.28862 -40.44962 -38.02737 -37.30998 -36.62302 -35.69242 -33.69353 -32.54890 -31.70463 -30.81641 -29.05208 -28.04940 -27.22550 -25.72398 -24.24841 -23.44832 -22.43905 -21.84034 -20.86973 -20.53759 -18.61222 -17.51642 -17.00592 -16.81883 -16.58070 -16.48777 -16.25116 -15.89956 -15.58093 -15.05779 -14.67611 -14.44688 -14.29779 -14.11991 -13.91103 -13.61457 -13.58665 -13.00333 -12.83928 -12.66594 -12.42756 -12.34345 -12.13978 -12.00582 -11.81397 -11.60148 -11.49431 -11.28479 -11.11513 -11.05573 -10.95431 -10.84273 -10.73429 -10.56670 -10.41095 -10.21938 -9.60851 -9.28191 -9.24712 -8.83129 -8.49745 -8.35281 -6.13278 -4.17010 0.37222 0.97848 2.22459 2.38792 3.21421 3.27304 3.34145 3.36820 3.63876 3.71627 3.76302 3.93207 4.33465 4.38030 4.48130 4.58986 4.77311 4.81022 4.83629 4.88343 4.93695 4.95752 5.07476 5.09464 5.20475 5.24922 5.27630 5.32273 5.40218 5.57717 5.58659 5.63585 5.67827 5.85601 5.92403 5.93830 5.97590 6.11169 6.17399 6.26768 6.31892 6.41442 6.92590 7.03417 7.21905 7.36288 7.46433 7.48894 7.81265 8.18009 8.52064 8.87533 9.48938 10.97496 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.009556 B = 0.003383 C = 0.002808 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2929.281597 B = 8274.965670 C = 9969.956118 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.353 6.353 3 C 0.512 3.488 4 O -0.505 6.505 5 C -0.114 4.114 6 C -0.066 4.066 7 C -0.105 4.105 8 C -0.110 4.110 9 C 0.090 3.910 10 C -0.066 4.066 11 O -0.322 6.322 12 C 0.022 3.978 13 C 0.018 3.982 14 N -0.529 5.529 15 C 0.056 3.944 16 C 0.011 3.989 17 H 0.099 0.901 18 C 0.255 3.745 19 N -0.476 5.476 20 C 0.033 3.967 21 C -0.527 4.527 22 H 0.057 0.943 23 C 0.064 3.936 24 N -0.890 5.890 25 Si 0.891 3.109 26 H -0.280 1.280 27 H -0.285 1.285 28 H -0.272 1.272 29 C 0.095 3.905 30 H 0.065 0.935 31 H 0.103 0.897 32 H 0.063 0.937 33 H 0.142 0.858 34 H 0.140 0.860 35 H 0.144 0.856 36 H 0.108 0.892 37 H 0.071 0.929 38 H 0.097 0.903 39 H 0.083 0.917 40 H 0.083 0.917 41 H 0.056 0.944 42 H 0.026 0.974 43 H 0.035 0.965 44 H 0.263 0.737 45 H 0.092 0.908 46 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.065 1.204 18.748 20.444 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.270 6.270 3 C 0.357 3.643 4 O -0.393 6.393 5 C -0.116 4.116 6 C -0.084 4.084 7 C -0.123 4.123 8 C -0.112 4.112 9 C 0.046 3.954 10 C -0.084 4.084 11 O -0.239 6.239 12 C -0.054 4.054 13 C -0.110 4.110 14 N -0.250 5.250 15 C -0.072 4.072 16 C -0.011 4.011 17 H 0.117 0.883 18 C -0.062 4.062 19 N -0.153 5.153 20 C -0.006 4.006 21 C -0.565 4.565 22 H 0.075 0.925 23 C -0.138 4.138 24 N -0.529 5.529 25 Si 0.718 3.282 26 H -0.206 1.206 27 H -0.211 1.211 28 H -0.197 1.197 29 C -0.032 4.032 30 H 0.084 0.916 31 H 0.122 0.878 32 H 0.082 0.918 33 H 0.160 0.840 34 H 0.157 0.843 35 H 0.162 0.838 36 H 0.126 0.874 37 H 0.090 0.910 38 H 0.115 0.885 39 H 0.102 0.898 40 H 0.101 0.899 41 H 0.074 0.926 42 H 0.045 0.955 43 H 0.054 0.946 44 H 0.072 0.928 45 H 0.110 0.890 46 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -6.366 0.661 18.665 19.732 hybrid contribution -1.171 0.636 -1.126 1.745 sum -7.537 1.296 17.539 19.134 Atomic orbital electron populations 1.23306 0.75748 1.03896 1.02730 1.86538 1.23723 1.32444 1.84266 1.21139 0.89021 0.81516 0.72641 1.90841 1.66767 1.36039 1.45688 1.18859 0.89038 0.94384 1.09294 1.21506 0.93815 0.97994 0.95128 1.21008 0.94160 0.97182 0.99995 1.21507 0.98677 0.93145 0.97892 1.18294 0.90077 0.85372 1.01648 1.21259 0.93290 0.97519 0.96367 1.86377 1.68567 1.32220 1.36747 1.23339 0.94416 1.02311 0.85337 1.22402 0.96097 0.87831 1.04672 1.61899 1.54655 1.06148 1.02265 1.22365 0.95237 1.00776 0.88838 1.19240 0.86021 0.99542 0.96324 0.88313 1.28848 0.93994 0.92772 0.90604 1.81049 1.12712 1.10458 1.11094 1.19160 0.94305 0.97517 0.89627 1.21110 1.09375 1.35394 0.90669 0.92485 1.24942 0.94796 0.94852 0.99249 1.69933 1.18092 1.38182 1.26673 0.86604 0.79020 0.79234 0.83297 1.20599 1.21090 1.19721 1.21520 0.86871 1.02398 0.92459 0.91609 0.87835 0.91834 0.84003 0.84254 0.83797 0.87361 0.91029 0.88494 0.89849 0.89857 0.92646 0.95536 0.94635 0.92756 0.89021 0.89130 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.28 10.56 101.05 1.07 1.35 16 2 O -0.35 -3.74 9.81 -40.53 -0.40 -4.14 16 3 C 0.51 6.40 7.90 34.61 0.27 6.68 16 4 O -0.50 -7.44 16.13 -19.24 -0.31 -7.75 16 5 C -0.11 -1.35 5.87 -104.98 -0.62 -1.97 16 6 C -0.07 -0.67 9.62 -39.12 -0.38 -1.05 16 7 C -0.10 -1.03 9.57 -39.67 -0.38 -1.41 16 8 C -0.11 -1.20 3.54 -104.13 -0.37 -1.57 16 9 C 0.09 1.09 5.20 -39.45 -0.20 0.88 16 10 C -0.07 -0.81 9.55 -38.97 -0.37 -1.18 16 11 O -0.32 -3.88 10.04 -20.35 -0.20 -4.08 16 12 C 0.02 0.23 6.25 36.33 0.23 0.46 16 13 C 0.02 0.20 5.18 -5.12 -0.03 0.17 16 14 N -0.53 -6.51 4.53 -237.41 -1.08 -7.58 16 15 C 0.06 0.80 3.05 -3.83 -0.01 0.78 16 16 C 0.01 0.19 2.12 -93.41 -0.20 -0.01 16 17 H 0.10 1.61 6.42 -51.92 -0.33 1.27 16 18 C 0.25 5.11 13.67 -20.72 -0.28 4.83 16 19 N -0.48 -10.43 18.55 42.20 0.78 -9.65 16 20 C 0.03 0.73 4.42 -27.88 -0.12 0.61 16 21 C -0.53 -13.73 8.60 -34.44 -0.30 -14.02 16 22 H 0.06 1.48 7.59 -52.49 -0.40 1.08 16 23 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 24 N -0.89 -25.14 13.29 55.43 0.74 -24.40 16 25 Si 0.89 21.01 29.54 -169.99 -5.02 15.99 16 26 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 27 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 28 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 29 C 0.10 1.00 5.73 -4.60 -0.03 0.97 16 30 H 0.07 0.52 8.14 -51.92 -0.42 0.09 16 31 H 0.10 0.49 8.14 -51.93 -0.42 0.06 16 32 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 33 H 0.14 1.18 7.60 -52.49 -0.40 0.78 16 34 H 0.14 1.09 7.98 -52.49 -0.42 0.67 16 35 H 0.14 1.77 7.65 -52.49 -0.40 1.37 16 36 H 0.11 0.94 8.14 -51.93 -0.42 0.51 16 37 H 0.07 0.85 6.08 -51.93 -0.32 0.53 16 38 H 0.10 1.05 6.52 -51.92 -0.34 0.72 16 39 H 0.08 0.82 7.89 -51.93 -0.41 0.41 16 40 H 0.08 1.20 7.98 -51.93 -0.41 0.79 16 41 H 0.06 0.79 4.98 -51.93 -0.26 0.53 16 42 H 0.03 0.65 8.14 -51.93 -0.42 0.22 16 43 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16 44 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 45 H 0.09 0.88 7.93 -51.93 -0.41 0.47 16 46 H 0.09 0.89 7.75 -51.93 -0.40 0.49 16 LS Contribution 383.00 15.07 5.77 5.77 Total: -1.00 -32.21 383.00 -7.70 -39.91 By element: Atomic # 1 Polarization: 4.94 SS G_CDS: -6.17 Total: -1.24 kcal Atomic # 6 Polarization: -1.02 SS G_CDS: -1.81 Total: -2.83 kcal Atomic # 7 Polarization: -42.08 SS G_CDS: 0.44 Total: -41.64 kcal Atomic # 8 Polarization: -15.06 SS G_CDS: -0.91 Total: -15.97 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -5.02 Total: 15.99 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -32.21 -7.70 -39.91 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000934431601.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.371 kcal (2) G-P(sol) polarization free energy of solvation -32.211 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.582 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.703 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.914 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.285 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds