Wall clock time and date at job start Wed Apr 1 2020 02:17:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34712 * 117.00011 * 2 1 4 4 O 1.21467 * 119.99904 * 0.02562 * 3 2 1 5 5 C 1.47741 * 119.99846 * 180.02562 * 3 2 1 6 6 C 1.39654 * 120.05602 * 359.97006 * 5 3 2 7 7 C 1.38068 * 119.95465 * 180.46007 * 6 5 3 8 8 C 1.38159 * 119.87572 * 359.90605 * 7 6 5 9 9 C 1.38314 * 120.68098 * 359.28292 * 8 7 6 10 10 C 1.38531 * 120.03479 * 1.19068 * 9 8 7 11 11 O 1.36192 * 119.87694 * 182.75484 * 9 8 7 12 12 C 1.43287 * 115.33132 * 68.66567 * 11 9 8 13 13 C 1.51357 * 110.71971 * 274.34529 * 12 11 9 14 14 N 1.46040 * 113.59905 * 65.19454 * 13 12 11 15 15 C 1.46894 * 110.99992 * 56.37683 * 14 13 12 16 16 C 1.52999 * 109.47262 * 66.05061 * 15 14 13 17 17 H 1.09009 * 109.46734 * 304.99523 * 16 15 14 18 18 C 1.47193 * 109.47535 * 64.99686 * 16 15 14 19 19 N 9.86392 * 157.36256 * 279.54923 * 2 1 3 20 20 C 1.52997 * 109.47116 * 185.00035 * 16 15 14 21 21 C 1.50701 * 109.47273 * 174.99838 * 20 16 15 22 22 H 1.08000 * 119.99590 * 359.97438 * 21 20 16 23 23 C 1.37873 * 120.00114 * 179.97438 * 21 20 16 24 24 N 1.31516 * 120.00392 * 359.97438 * 23 21 20 25 25 Si 1.86801 * 120.00098 * 179.97438 * 23 21 20 26 26 H 1.48501 * 109.47227 * 90.00010 * 25 23 21 27 27 H 1.48499 * 109.47505 * 210.00380 * 25 23 21 28 28 H 1.48506 * 109.47041 * 329.99994 * 25 23 21 29 29 C 1.46692 * 112.58250 * 291.24344 * 14 13 12 30 30 H 1.09008 * 109.47211 * 59.99869 * 1 2 3 31 31 H 1.08995 * 109.47600 * 179.97438 * 1 2 3 32 32 H 1.09003 * 109.47310 * 300.00303 * 1 2 3 33 33 H 1.08000 * 120.02471 * 0.49483 * 6 5 3 34 34 H 1.07998 * 120.06655 * 179.97438 * 7 6 5 35 35 H 1.07996 * 120.22158 * 179.13615 * 10 9 8 36 36 H 1.09002 * 109.22171 * 154.03589 * 12 11 9 37 37 H 1.09003 * 109.22209 * 34.65213 * 12 11 9 38 38 H 1.09008 * 108.65120 * 186.25663 * 13 12 11 39 39 H 1.09003 * 108.65799 * 304.26024 * 13 12 11 40 40 H 1.09004 * 109.47133 * 186.04554 * 15 14 13 41 41 H 1.09001 * 109.47455 * 306.04776 * 15 14 13 42 42 H 1.09002 * 109.47137 * 294.99360 * 20 16 15 43 43 H 1.08997 * 109.47356 * 54.99596 * 20 16 15 44 44 H 0.96995 * 120.00513 * 179.97438 * 24 23 21 45 45 H 1.08997 * 109.57678 * 204.15221 * 29 14 13 46 46 H 1.08996 * 109.58240 * 324.55972 * 29 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0636 1.2003 0.0000 4 8 1.4020 2.2190 0.0005 5 6 3.5390 1.2776 -0.0006 6 6 4.3007 0.1071 -0.0005 7 6 5.6793 0.1817 0.0086 8 6 6.3017 1.4151 0.0156 9 6 5.5579 2.5811 -0.0013 10 6 4.1739 2.5207 -0.0005 11 8 6.1882 3.7873 -0.0508 12 6 6.8619 4.0769 -1.2818 13 6 8.2595 3.4959 -1.2770 14 7 8.2858 2.0364 -1.2355 15 6 7.5264 1.4641 -2.3552 16 6 8.2266 1.8033 -3.6726 17 1 8.3610 2.8827 -3.7451 18 6 9.5406 1.1414 -3.7145 19 7 10.5560 0.6298 -3.7440 20 6 7.3723 1.3159 -4.8445 21 6 7.9999 1.7573 -6.1415 22 1 8.9163 2.3288 -6.1309 23 6 7.4044 1.4317 -7.3415 24 7 6.2887 0.7353 -7.3545 25 14 8.1820 1.9795 -8.9492 26 1 9.1293 0.9378 -9.4211 27 1 7.1212 2.1822 -9.9685 28 1 8.9136 3.2541 -8.7362 29 6 7.8159 1.5007 0.0468 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3634 0.5139 0.8900 33 1 3.8117 -0.8559 -0.0081 34 1 6.2701 -0.7223 0.0091 35 1 3.5901 3.4293 0.0004 36 1 6.9228 5.1574 -1.4120 37 1 6.2975 3.6472 -2.1095 38 1 8.7785 3.8287 -2.1760 39 1 8.7927 3.8774 -0.4062 40 1 7.4715 0.3815 -2.2413 41 1 6.5190 1.8804 -2.3615 42 1 7.3117 0.2278 -4.8221 43 1 6.3704 1.7373 -4.7637 44 1 5.8695 0.5065 -8.1987 45 1 8.2348 0.5067 0.2029 46 1 8.1278 2.1619 0.8552 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000934431601.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:17:20 Heat of formation + Delta-G solvation = -80.323361 kcal Electronic energy + Delta-G solvation = -30260.033828 eV Core-core repulsion = 26114.608261 eV Total energy + Delta-G solvation = -4145.425567 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.157 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.17967 -41.36690 -39.07792 -38.32123 -37.54977 -37.06710 -35.49079 -33.79472 -33.06724 -31.69609 -29.91428 -29.26382 -28.27989 -26.78330 -25.57213 -24.37228 -23.65528 -23.23179 -21.74960 -21.53273 -19.51341 -18.58734 -18.37389 -18.28686 -17.59926 -17.44312 -17.20309 -16.95282 -16.54409 -16.49336 -15.96268 -15.54582 -15.39303 -14.96992 -14.86722 -14.65008 -14.46303 -14.38694 -14.25109 -13.80511 -13.75150 -13.61056 -13.23711 -13.10735 -12.99456 -12.98666 -12.67350 -12.65888 -12.53591 -12.36380 -12.30355 -11.88257 -11.86609 -11.85441 -11.70591 -11.40070 -11.25402 -11.14093 -10.55719 -10.11516 -9.69592 -9.30918 -8.19424 -6.27853 -0.51062 0.13014 1.31575 1.40288 1.42819 1.51333 1.57533 2.06338 2.13691 2.35494 2.41538 2.83000 2.97083 3.16341 3.31457 3.50044 3.67039 3.74068 3.93646 4.01047 4.06344 4.16330 4.23154 4.26498 4.29985 4.32849 4.38424 4.41920 4.55620 4.63655 4.69550 4.72979 4.76206 4.82015 4.88050 4.99245 5.04710 5.11901 5.14188 5.25888 5.34328 5.45076 5.51746 5.58917 5.78108 5.93267 6.10169 6.19712 6.34993 6.57754 6.83218 6.93704 7.41169 8.91400 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.009556 B = 0.003383 C = 0.002808 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2929.281597 B = 8274.965670 C = 9969.956118 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.353 6.353 3 C 0.512 3.488 4 O -0.536 6.536 5 C -0.127 4.127 6 C -0.061 4.061 7 C -0.102 4.102 8 C -0.111 4.111 9 C 0.080 3.920 10 C -0.080 4.080 11 O -0.330 6.330 12 C 0.023 3.977 13 C 0.018 3.982 14 N -0.535 5.535 15 C 0.070 3.930 16 C 0.022 3.978 17 H 0.117 0.883 18 C 0.266 3.734 19 N -0.508 5.508 20 C 0.040 3.960 21 C -0.538 4.538 22 H 0.056 0.944 23 C 0.014 3.986 24 N -0.923 5.923 25 Si 0.945 3.055 26 H -0.283 1.283 27 H -0.281 1.281 28 H -0.263 1.263 29 C 0.098 3.902 30 H 0.060 0.940 31 H 0.137 0.863 32 H 0.066 0.934 33 H 0.162 0.838 34 H 0.165 0.835 35 H 0.134 0.866 36 H 0.129 0.871 37 H 0.057 0.943 38 H 0.097 0.903 39 H 0.098 0.902 40 H 0.083 0.917 41 H 0.057 0.943 42 H 0.002 0.998 43 H 0.028 0.972 44 H 0.263 0.737 45 H 0.105 0.895 46 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.396 0.984 19.473 20.853 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.269 6.269 3 C 0.358 3.642 4 O -0.428 6.428 5 C -0.129 4.129 6 C -0.079 4.079 7 C -0.120 4.120 8 C -0.114 4.114 9 C 0.036 3.964 10 C -0.099 4.099 11 O -0.247 6.247 12 C -0.053 4.053 13 C -0.110 4.110 14 N -0.256 5.256 15 C -0.059 4.059 16 C 0.000 4.000 17 H 0.135 0.865 18 C -0.050 4.050 19 N -0.185 5.185 20 C 0.001 3.999 21 C -0.576 4.576 22 H 0.074 0.926 23 C -0.186 4.186 24 N -0.563 5.563 25 Si 0.771 3.229 26 H -0.209 1.209 27 H -0.206 1.206 28 H -0.187 1.187 29 C -0.029 4.029 30 H 0.078 0.922 31 H 0.155 0.845 32 H 0.085 0.915 33 H 0.179 0.821 34 H 0.183 0.817 35 H 0.152 0.848 36 H 0.147 0.853 37 H 0.075 0.925 38 H 0.115 0.885 39 H 0.116 0.884 40 H 0.101 0.899 41 H 0.075 0.925 42 H 0.021 0.979 43 H 0.046 0.954 44 H 0.072 0.928 45 H 0.123 0.877 46 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -5.690 0.438 19.404 20.226 hybrid contribution -1.418 0.676 -1.320 2.052 sum -7.108 1.114 18.084 19.462 Atomic orbital electron populations 1.23621 0.74094 1.06069 1.02653 1.86529 1.25372 1.31301 1.83692 1.21337 0.89369 0.81617 0.71853 1.90818 1.67467 1.37091 1.47404 1.18965 0.88929 0.94917 1.10068 1.21745 0.94024 0.98146 0.93953 1.21328 0.94203 0.97734 0.98747 1.21608 0.98926 0.93137 0.97709 1.18403 0.90020 0.85836 1.02157 1.21269 0.93665 0.97551 0.97389 1.86365 1.68684 1.32421 1.37254 1.23410 0.93923 1.03496 0.84426 1.22461 0.96225 0.86951 1.05389 1.61855 1.54347 1.07064 1.02357 1.22107 0.94905 1.00912 0.87949 1.19146 0.84299 1.00106 0.96419 0.86522 1.29221 0.94087 0.92048 0.89646 1.81054 1.13818 1.11495 1.12134 1.18955 0.94624 0.95857 0.90455 1.21529 1.09179 1.34696 0.92164 0.92577 1.25684 0.95314 0.95170 1.02384 1.70030 1.19363 1.39527 1.27356 0.85737 0.78239 0.78992 0.79900 1.20938 1.20603 1.18692 1.21597 0.86459 1.03301 0.91582 0.92155 0.84529 0.91534 0.82066 0.81740 0.84835 0.85330 0.92504 0.88477 0.88361 0.89878 0.92550 0.97943 0.95369 0.92762 0.87689 0.88169 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.40 10.56 113.37 1.20 1.60 16 2 O -0.35 -7.19 9.81 -56.22 -0.55 -7.74 16 3 C 0.51 12.87 7.90 70.33 0.56 13.43 16 4 O -0.54 -16.30 16.13 19.94 0.32 -15.98 16 5 C -0.13 -2.98 5.87 -20.10 -0.12 -3.09 16 6 C -0.06 -1.13 9.62 22.57 0.22 -0.91 16 7 C -0.10 -1.77 9.57 22.21 0.21 -1.56 16 8 C -0.11 -2.23 3.54 -19.55 -0.07 -2.30 16 9 C 0.08 1.86 5.20 22.36 0.12 1.98 16 10 C -0.08 -1.99 9.55 22.67 0.22 -1.77 16 11 O -0.33 -7.60 10.04 -95.74 -0.96 -8.56 16 12 C 0.02 0.46 6.25 71.44 0.45 0.91 16 13 C 0.02 0.35 5.18 85.93 0.45 0.79 16 14 N -0.54 -11.99 4.53 -905.03 -4.10 -16.09 16 15 C 0.07 1.88 3.05 86.30 0.26 2.15 16 16 C 0.02 0.75 2.12 -12.60 -0.03 0.73 16 17 H 0.12 3.60 6.42 -2.38 -0.02 3.58 16 18 C 0.27 10.38 13.67 89.43 1.22 11.60 16 19 N -0.51 -21.72 18.55 20.02 0.37 -21.35 16 20 C 0.04 1.79 4.42 29.85 0.13 1.92 16 21 C -0.54 -27.78 8.60 25.60 0.22 -27.56 16 22 H 0.06 2.85 7.59 -2.91 -0.02 2.83 16 23 C 0.01 0.73 5.46 84.65 0.46 1.19 16 24 N -0.92 -52.40 13.29 21.45 0.28 -52.11 16 25 Si 0.95 42.74 29.54 68.60 2.03 44.76 16 26 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 27 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 28 H -0.26 -11.36 7.11 99.48 0.71 -10.65 16 29 C 0.10 1.80 5.73 85.91 0.49 2.29 16 30 H 0.06 0.93 8.14 -2.38 -0.02 0.91 16 31 H 0.14 0.99 8.14 -2.39 -0.02 0.97 16 32 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 33 H 0.16 2.32 7.60 -2.91 -0.02 2.29 16 34 H 0.17 2.01 7.98 -2.91 -0.02 1.99 16 35 H 0.13 3.48 7.65 -2.91 -0.02 3.46 16 36 H 0.13 1.99 8.14 -2.39 -0.02 1.97 16 37 H 0.06 1.30 6.08 -2.39 -0.01 1.29 16 38 H 0.10 1.89 6.52 -2.38 -0.02 1.87 16 39 H 0.10 1.65 7.89 -2.39 -0.02 1.64 16 40 H 0.08 2.25 7.98 -2.39 -0.02 2.23 16 41 H 0.06 1.54 4.98 -2.39 -0.01 1.53 16 42 H 0.00 0.11 8.14 -2.39 -0.02 0.09 16 43 H 0.03 1.31 8.14 -2.39 -0.02 1.29 16 44 H 0.26 14.25 8.31 -92.71 -0.77 13.48 16 45 H 0.10 1.67 7.93 -2.39 -0.02 1.66 16 46 H 0.10 1.69 7.75 -2.39 -0.02 1.67 16 Total: -1.00 -68.94 383.00 4.39 -64.55 By element: Atomic # 1 Polarization: 10.13 SS G_CDS: 1.01 Total: 11.14 kcal Atomic # 6 Polarization: -4.59 SS G_CDS: 5.99 Total: 1.39 kcal Atomic # 7 Polarization: -86.11 SS G_CDS: -3.44 Total: -89.56 kcal Atomic # 8 Polarization: -31.10 SS G_CDS: -1.19 Total: -32.29 kcal Atomic # 14 Polarization: 42.74 SS G_CDS: 2.03 Total: 44.76 kcal Total: -68.94 4.39 -64.55 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000934431601.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.774 kcal (2) G-P(sol) polarization free energy of solvation -68.939 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.713 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.390 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.550 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.323 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds