Wall clock time and date at job start Wed Apr 1 2020 02:17:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45203 * 1 3 3 C 1.34712 * 116.99705 * 2 1 4 4 O 1.21468 * 120.00143 * 359.97438 * 3 2 1 5 5 C 1.47735 * 119.99877 * 180.02562 * 3 2 1 6 6 C 1.39661 * 120.03515 * 359.97438 * 5 3 2 7 7 C 1.38089 * 119.90962 * 179.54327 * 6 5 3 8 8 C 1.38093 * 119.85197 * 359.95843 * 7 6 5 9 9 C 1.38339 * 120.81042 * 0.94654 * 8 7 6 10 10 C 1.38583 * 119.89542 * 358.66153 * 9 8 7 11 11 O 1.36057 * 120.12733 * 178.41904 * 9 8 7 12 12 C 1.43320 * 115.32402 * 290.89270 * 11 9 8 13 13 C 1.51359 * 110.68964 * 85.37090 * 12 11 9 14 14 N 1.46015 * 113.61090 * 295.02035 * 13 12 11 15 15 C 1.46901 * 111.00201 * 194.13993 * 14 13 12 16 16 C 1.53004 * 109.47157 * 163.91649 * 15 14 13 17 17 H 1.09000 * 109.46844 * 56.51988 * 16 15 14 18 18 C 1.47195 * 109.47229 * 296.51943 * 16 15 14 19 19 N 7.78186 * 148.66790 * 93.07981 * 2 1 3 20 20 C 1.53001 * 109.46991 * 176.51874 * 16 15 14 21 21 C 1.50701 * 109.46886 * 184.99961 * 20 16 15 22 22 H 1.07998 * 120.00108 * 0.02562 * 21 20 16 23 23 C 1.37872 * 119.99827 * 179.97438 * 21 20 16 24 24 N 1.31512 * 120.00243 * 0.02562 * 23 21 20 25 25 Si 1.86795 * 120.00082 * 180.02562 * 23 21 20 26 26 H 1.48497 * 109.47119 * 359.97438 * 25 23 21 27 27 H 1.48503 * 109.47440 * 120.00277 * 25 23 21 28 28 H 1.48509 * 109.47295 * 240.00189 * 25 23 21 29 29 C 1.46669 * 112.63262 * 68.97414 * 14 13 12 30 30 H 1.09005 * 109.47016 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.47413 * 300.00139 * 1 2 3 32 32 H 1.09002 * 109.47397 * 60.00176 * 1 2 3 33 33 H 1.07999 * 120.04300 * 359.52372 * 6 5 3 34 34 H 1.07997 * 120.07519 * 179.97438 * 7 6 5 35 35 H 1.07996 * 120.20760 * 180.80269 * 10 9 8 36 36 H 1.09005 * 109.23625 * 325.06145 * 12 11 9 37 37 H 1.09003 * 109.19936 * 205.66254 * 12 11 9 38 38 H 1.09005 * 108.65977 * 173.95160 * 13 12 11 39 39 H 1.09003 * 108.65548 * 56.08614 * 13 12 11 40 40 H 1.08997 * 109.46966 * 283.92109 * 15 14 13 41 41 H 1.09003 * 109.46793 * 43.91656 * 15 14 13 42 42 H 1.09001 * 109.47094 * 305.00424 * 20 16 15 43 43 H 1.09004 * 109.47011 * 64.99956 * 20 16 15 44 44 H 0.97004 * 120.00359 * 180.02562 * 24 23 21 45 45 H 1.08995 * 109.58224 * 35.23071 * 29 14 13 46 46 H 1.08997 * 109.58361 * 155.63780 * 29 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0635 1.2003 0.0000 4 8 1.4020 2.2190 -0.0005 5 6 3.5389 1.2777 -0.0006 6 6 4.3003 0.1069 -0.0006 7 6 5.6791 0.1822 -0.0106 8 6 6.3000 1.4156 -0.0216 9 6 5.5577 2.5828 -0.0029 10 6 4.1733 2.5210 -0.0010 11 8 6.1843 3.7903 0.0185 12 6 6.8749 4.1012 1.2352 13 6 8.2716 3.5180 1.2214 14 7 8.2956 2.0582 1.2005 15 6 9.6353 1.5491 1.5231 16 6 9.5435 0.0652 1.8848 17 1 9.0804 -0.4811 1.0631 18 6 8.7291 -0.0940 3.1006 19 7 8.0990 -0.2174 4.0407 20 6 10.9484 -0.4862 2.1362 21 6 10.8698 -1.9726 2.3717 22 1 9.9136 -2.4739 2.3444 23 6 12.0188 -2.6927 2.6211 24 7 13.1833 -2.0824 2.6539 25 14 11.9216 -4.5353 2.9123 26 1 10.5064 -4.9764 2.8237 27 1 12.7263 -5.2422 1.8837 28 1 12.4547 -4.8521 4.2617 29 6 7.8143 1.5039 -0.0692 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8900 32 1 -0.3634 0.5138 -0.8900 33 1 3.8113 -0.8561 0.0076 34 1 6.2705 -0.7215 -0.0103 35 1 3.5888 3.4291 0.0005 36 1 6.3213 3.6873 2.0781 37 1 6.9388 5.1838 1.3446 38 1 8.8023 3.8628 2.1089 39 1 8.7952 3.8880 0.3399 40 1 10.2886 1.6728 0.6594 41 1 10.0413 2.1047 2.3684 42 1 11.5771 -0.2885 1.2680 43 1 11.3774 -0.0015 3.0133 44 1 13.9917 -2.5891 2.8289 45 1 8.1167 2.1544 -0.8898 46 1 8.2338 0.5086 -0.2158 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000934431603.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:17:24 Heat of formation + Delta-G solvation = -83.121998 kcal Electronic energy + Delta-G solvation = -29640.375516 eV Core-core repulsion = 25494.828591 eV Total energy + Delta-G solvation = -4145.546925 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.157 amu Computer time = 1.65 seconds Orbital eigenvalues (eV) -41.92244 -41.20490 -39.12157 -38.40505 -37.55138 -37.01798 -35.44058 -33.67215 -33.28292 -31.74681 -30.13115 -29.24626 -28.02040 -27.22425 -24.75341 -24.32625 -23.51169 -23.08081 -22.07851 -21.73072 -19.53016 -18.56832 -18.39767 -18.22398 -17.60436 -17.45569 -17.21618 -16.77492 -16.60213 -16.41073 -15.85113 -15.65588 -15.28922 -14.99773 -14.76196 -14.65783 -14.48494 -14.38978 -14.23131 -14.07577 -13.71528 -13.48356 -13.12406 -13.11345 -13.00008 -12.92408 -12.62273 -12.60817 -12.47334 -12.44042 -12.24916 -12.00378 -11.87202 -11.79003 -11.73206 -11.39421 -11.19091 -10.98734 -10.52515 -10.07214 -9.68988 -9.28050 -8.16825 -6.24052 -0.48310 0.15372 1.31787 1.40890 1.45090 1.54374 1.56939 2.10904 2.18980 2.36899 2.43947 2.73856 3.03422 3.19497 3.38949 3.53905 3.68869 3.80253 3.98559 4.02747 4.10576 4.19685 4.24629 4.28726 4.31150 4.32353 4.37817 4.49659 4.54912 4.65385 4.67322 4.74155 4.77957 4.86926 4.91889 4.92554 5.01489 5.08129 5.13162 5.25974 5.39583 5.51420 5.53175 5.65769 5.82641 5.99416 6.10673 6.24758 6.37348 6.56651 6.87868 6.99389 7.44641 8.94099 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.012052 B = 0.002778 C = 0.002376 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2322.745128 B =10077.078175 C =11781.843006 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.355 6.355 3 C 0.514 3.486 4 O -0.535 6.535 5 C -0.131 4.131 6 C -0.063 4.063 7 C -0.107 4.107 8 C -0.066 4.066 9 C 0.085 3.915 10 C -0.079 4.079 11 O -0.333 6.333 12 C 0.065 3.935 13 C 0.028 3.972 14 N -0.562 5.562 15 C 0.078 3.922 16 C 0.022 3.978 17 H 0.119 0.881 18 C 0.267 3.733 19 N -0.516 5.516 20 C 0.038 3.962 21 C -0.534 4.534 22 H 0.055 0.945 23 C 0.012 3.988 24 N -0.923 5.923 25 Si 0.944 3.056 26 H -0.268 1.268 27 H -0.274 1.274 28 H -0.288 1.288 29 C 0.088 3.912 30 H 0.135 0.865 31 H 0.062 0.938 32 H 0.066 0.934 33 H 0.159 0.841 34 H 0.156 0.844 35 H 0.138 0.862 36 H 0.052 0.948 37 H 0.133 0.867 38 H 0.098 0.902 39 H 0.056 0.944 40 H 0.079 0.921 41 H 0.083 0.917 42 H 0.038 0.962 43 H 0.001 0.999 44 H 0.263 0.737 45 H 0.071 0.929 46 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.119 9.354 -10.110 21.972 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.271 6.271 3 C 0.361 3.639 4 O -0.427 6.427 5 C -0.132 4.132 6 C -0.081 4.081 7 C -0.126 4.126 8 C -0.068 4.068 9 C 0.040 3.960 10 C -0.097 4.097 11 O -0.250 6.250 12 C -0.009 4.009 13 C -0.099 4.099 14 N -0.286 5.286 15 C -0.050 4.050 16 C 0.000 4.000 17 H 0.136 0.864 18 C -0.049 4.049 19 N -0.194 5.194 20 C -0.001 4.001 21 C -0.572 4.572 22 H 0.073 0.927 23 C -0.187 4.187 24 N -0.564 5.564 25 Si 0.771 3.229 26 H -0.192 1.192 27 H -0.200 1.200 28 H -0.215 1.215 29 C -0.039 4.039 30 H 0.153 0.847 31 H 0.081 0.919 32 H 0.084 0.916 33 H 0.176 0.824 34 H 0.173 0.827 35 H 0.155 0.845 36 H 0.071 0.929 37 H 0.151 0.849 38 H 0.116 0.884 39 H 0.074 0.926 40 H 0.097 0.903 41 H 0.102 0.898 42 H 0.056 0.944 43 H 0.020 0.980 44 H 0.072 0.928 45 H 0.089 0.911 46 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -18.418 9.424 -8.455 22.350 hybrid contribution 0.737 -0.696 -0.247 1.043 sum -17.681 8.728 -8.702 21.553 Atomic orbital electron populations 1.23624 0.74047 1.06036 1.02731 1.86542 1.25426 1.31392 1.83704 1.21271 0.89220 0.81590 0.71834 1.90809 1.67397 1.36984 1.47497 1.18930 0.88966 0.94794 1.10549 1.21688 0.93788 0.98241 0.94360 1.21237 0.94395 0.97710 0.99224 1.20771 0.97041 0.92876 0.96070 1.18326 0.89987 0.85722 1.01921 1.21258 0.93481 0.97484 0.97515 1.86327 1.68269 1.32200 1.38162 1.22892 0.91406 1.01998 0.84616 1.22218 0.97740 0.86523 1.03449 1.60794 1.25999 1.09017 1.32804 1.22083 0.88473 0.92383 1.02101 1.19247 0.94431 0.97612 0.88734 0.86355 1.29432 0.91289 0.90139 0.94086 1.81103 1.13340 1.11731 1.13199 1.18999 0.89566 0.94243 0.97318 1.21573 0.93036 0.94529 1.48050 0.92681 1.25667 0.95403 1.02301 0.95318 1.70028 0.98521 1.37270 1.50536 0.85704 0.78374 0.81296 0.77561 1.19201 1.19960 1.21485 1.21414 0.89445 1.02457 0.90600 0.84660 0.91932 0.91552 0.82365 0.82678 0.84453 0.92934 0.84935 0.88362 0.92610 0.90296 0.89842 0.94389 0.98038 0.92823 0.91130 0.87873 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.37 10.56 113.37 1.20 1.57 16 2 O -0.35 -7.04 9.81 -56.22 -0.55 -7.59 16 3 C 0.51 12.52 7.90 70.33 0.56 13.08 16 4 O -0.54 -15.47 16.13 19.94 0.32 -15.14 16 5 C -0.13 -3.08 5.87 -20.10 -0.12 -3.20 16 6 C -0.06 -1.28 9.62 22.58 0.22 -1.07 16 7 C -0.11 -2.23 9.68 22.20 0.21 -2.02 16 8 C -0.07 -1.50 5.48 -19.54 -0.11 -1.60 16 9 C 0.08 2.03 5.62 22.38 0.13 2.15 16 10 C -0.08 -1.93 9.55 22.68 0.22 -1.71 16 11 O -0.33 -7.56 10.03 -94.19 -0.95 -8.50 16 12 C 0.07 1.20 6.64 71.45 0.47 1.67 16 13 C 0.03 0.51 5.21 85.93 0.45 0.96 16 14 N -0.56 -12.63 3.98 -905.00 -3.60 -16.23 16 15 C 0.08 1.90 4.31 86.30 0.37 2.27 16 16 C 0.02 0.70 2.18 -12.60 -0.03 0.67 16 17 H 0.12 3.41 6.40 -2.39 -0.02 3.40 16 18 C 0.27 10.31 13.64 89.41 1.22 11.53 16 19 N -0.52 -22.33 18.55 20.03 0.37 -21.95 16 20 C 0.04 1.61 4.42 29.85 0.13 1.74 16 21 C -0.53 -26.89 8.60 25.60 0.22 -26.67 16 22 H 0.05 2.75 7.59 -2.91 -0.02 2.73 16 23 C 0.01 0.63 5.46 84.65 0.46 1.09 16 24 N -0.92 -51.41 13.29 21.44 0.28 -51.13 16 25 Si 0.94 42.15 29.54 68.60 2.03 44.18 16 26 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 27 H -0.27 -11.78 7.11 99.48 0.71 -11.08 16 28 H -0.29 -13.02 7.11 99.48 0.71 -12.31 16 29 C 0.09 1.81 5.06 85.94 0.43 2.25 16 30 H 0.14 0.88 8.14 -2.38 -0.02 0.86 16 31 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 32 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 33 H 0.16 2.60 7.60 -2.91 -0.02 2.58 16 34 H 0.16 2.72 7.98 -2.91 -0.02 2.70 16 35 H 0.14 3.38 7.65 -2.91 -0.02 3.35 16 36 H 0.05 1.12 7.91 -2.38 -0.02 1.10 16 37 H 0.13 1.66 8.14 -2.39 -0.02 1.64 16 38 H 0.10 1.60 7.68 -2.38 -0.02 1.58 16 39 H 0.06 0.91 7.89 -2.39 -0.02 0.89 16 40 H 0.08 1.65 8.08 -2.39 -0.02 1.63 16 41 H 0.08 2.05 7.70 -2.39 -0.02 2.04 16 42 H 0.04 1.64 8.14 -2.39 -0.02 1.62 16 43 H 0.00 0.06 8.14 -2.38 -0.02 0.04 16 44 H 0.26 13.94 8.31 -92.71 -0.77 13.17 16 45 H 0.07 1.35 7.75 -2.39 -0.02 1.33 16 46 H 0.10 1.97 5.83 -2.39 -0.01 1.95 16 Total: -1.00 -68.67 389.66 4.94 -63.73 By element: Atomic # 1 Polarization: 8.92 SS G_CDS: 1.00 Total: 9.92 kcal Atomic # 6 Polarization: -3.31 SS G_CDS: 6.04 Total: 2.73 kcal Atomic # 7 Polarization: -86.37 SS G_CDS: -2.95 Total: -89.31 kcal Atomic # 8 Polarization: -30.06 SS G_CDS: -1.17 Total: -31.24 kcal Atomic # 14 Polarization: 42.15 SS G_CDS: 2.03 Total: 44.18 kcal Total: -68.67 4.94 -63.73 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000934431603.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.394 kcal (2) G-P(sol) polarization free energy of solvation -68.672 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.066 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.944 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.728 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.122 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.65 seconds