Wall clock time and date at job start Wed Apr 1 2020 02:31:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86800 * 119.99804 * 2 1 4 4 H 1.48498 * 109.47425 * 239.99993 * 3 2 1 5 5 H 1.48496 * 109.47379 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.46924 * 120.00095 * 3 2 1 7 7 C 1.38807 * 120.00293 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00676 * 179.97438 * 7 2 1 9 9 N 1.36937 * 119.99993 * 359.97438 * 7 2 1 10 10 C 1.46503 * 120.00593 * 180.02562 * 9 7 2 11 11 H 1.09006 * 109.46855 * 34.99995 * 10 9 7 12 12 C 1.52999 * 109.47111 * 275.00415 * 10 9 7 13 13 C 1.53004 * 109.47133 * 179.97438 * 12 10 9 14 14 C 1.52998 * 109.46770 * 59.99995 * 13 12 10 15 15 C 1.53002 * 109.47452 * 300.00255 * 14 13 12 16 16 H 1.09006 * 109.46554 * 299.99921 * 15 14 13 17 17 N 1.46500 * 109.47538 * 180.02562 * 15 14 13 18 18 C 1.34769 * 120.00011 * 84.99400 * 17 15 14 19 19 O 1.21605 * 120.00295 * 0.02562 * 18 17 15 20 20 C 1.47518 * 120.00076 * 180.02562 * 18 17 15 21 21 C 1.40147 * 119.94440 * 0.02562 * 20 18 17 22 22 C 1.36210 * 120.49295 * 179.97438 * 21 20 18 23 23 C 1.40024 * 120.08431 * 0.02562 * 22 21 20 24 24 N 1.35563 * 133.26483 * 179.97438 * 23 22 21 25 25 C 1.30924 * 109.70434 * 180.02562 * 24 23 22 26 26 O 1.35203 * 125.00550 * 179.97438 * 25 24 23 27 27 N 1.36251 * 109.97936 * 0.26438 * 25 24 23 28 28 H 0.96994 * 126.39987 * 179.73800 * 27 25 24 29 29 C 1.38566 * 107.20063 * 359.57541 * 27 25 24 30 30 C 1.38209 * 133.89384 * 180.08144 * 29 27 25 31 31 C 1.52998 * 109.47335 * 59.99777 * 15 14 13 32 32 H 0.96998 * 120.00033 * 0.02562 * 1 2 3 33 33 H 0.97000 * 119.99813 * 0.02562 * 9 7 2 34 34 H 1.08997 * 109.47197 * 299.99494 * 12 10 9 35 35 H 1.09003 * 109.47342 * 59.99682 * 12 10 9 36 36 H 1.08994 * 109.46933 * 179.97438 * 13 12 10 37 37 H 1.08997 * 109.47260 * 300.00183 * 13 12 10 38 38 H 1.09002 * 109.47307 * 179.97438 * 14 13 12 39 39 H 1.09006 * 109.47177 * 59.99796 * 14 13 12 40 40 H 0.97001 * 119.99740 * 265.00278 * 17 15 14 41 41 H 1.07999 * 119.75704 * 0.02562 * 21 20 18 42 42 H 1.08001 * 119.96012 * 179.97438 * 22 21 20 43 43 H 0.96700 * 114.00205 * 90.02699 * 26 25 24 44 44 H 1.08000 * 120.20757 * 0.36058 * 30 29 27 45 45 H 1.08997 * 109.47005 * 60.00296 * 31 15 14 46 46 H 1.08996 * 109.47219 * 180.02562 * 31 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1039 1.6965 -1.2125 5 1 1.2852 2.7465 0.0006 6 1 3.1039 1.6964 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3257 -2.3880 -0.0005 10 6 2.0581 -3.6568 -0.0005 11 1 2.9689 -3.5506 0.5889 12 6 2.4221 -4.0356 -1.4375 13 6 3.1876 -5.3604 -1.4375 14 6 2.3108 -6.4559 -0.8277 15 6 1.9467 -6.0771 0.6093 16 1 2.8575 -5.9705 1.1987 17 7 1.1077 -7.1264 1.1933 18 6 1.6781 -8.2080 1.7599 19 8 2.8893 -8.3128 1.7868 20 6 0.8332 -9.2649 2.3476 21 6 -0.5626 -9.1433 2.3155 22 6 -1.3534 -10.1126 2.8543 23 6 -0.7747 -11.2417 3.4468 24 7 -1.2894 -12.3414 4.0496 25 6 -0.3170 -13.1230 4.4467 26 8 -0.4822 -14.3033 5.0851 27 7 0.8859 -12.5685 4.1274 28 1 1.7605 -12.9439 4.3142 29 6 0.6263 -11.3697 3.4827 30 6 1.4250 -10.3838 2.9348 31 6 1.1813 -4.7524 0.6092 32 1 -0.4850 0.8400 -0.0004 33 1 0.3557 -2.3880 -0.0005 34 1 1.5114 -4.1419 -2.0270 35 1 3.0471 -3.2552 -1.8718 36 1 3.4464 -5.6304 -2.4612 37 1 4.0982 -5.2538 -0.8481 38 1 2.8559 -7.3998 -0.8281 39 1 1.4000 -6.5625 -1.4171 40 1 0.1415 -7.0427 1.1721 41 1 -1.0147 -8.2749 1.8595 42 1 -2.4281 -10.0099 2.8252 43 1 -0.5482 -15.0649 4.4930 44 1 2.5005 -10.4788 2.9608 45 1 0.2707 -4.8589 0.0198 46 1 0.9224 -4.4823 1.6330 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000981357298.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:31:33 Heat of formation + Delta-G solvation = 1.592181 kcal Electronic energy + Delta-G solvation = -28761.071098 eV Core-core repulsion = 24651.490406 eV Total energy + Delta-G solvation = -4109.580692 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.164 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.66267 -40.22124 -38.65527 -37.93908 -36.60703 -34.73802 -33.73585 -33.36379 -31.13389 -30.53948 -30.26858 -28.74188 -27.69836 -24.35071 -23.66511 -23.27374 -22.22580 -21.97894 -21.37951 -20.43337 -19.57376 -19.54440 -18.41060 -17.84616 -17.14238 -16.85917 -16.23514 -16.04855 -15.22770 -14.93065 -14.72881 -14.52964 -14.39023 -14.37103 -13.94992 -13.78019 -13.58756 -13.51803 -13.13114 -12.70870 -12.55686 -12.17738 -12.11622 -12.01790 -11.92041 -11.25401 -10.98889 -10.93365 -10.85887 -10.71871 -10.53527 -10.35030 -10.31968 -10.17714 -10.13191 -9.72579 -9.59730 -9.05075 -8.93233 -8.85710 -8.56813 -6.95570 -5.76124 -3.04710 0.13836 0.94352 1.73502 2.00025 2.79354 3.04151 3.24391 3.44924 3.49534 3.50210 3.56376 3.98578 4.46572 4.53033 4.58856 4.72131 4.80446 4.86922 4.96048 5.07400 5.12969 5.32808 5.50997 5.56259 5.60921 5.69210 5.71228 5.77777 5.87453 5.90959 5.92307 5.97822 6.03333 6.14565 6.15322 6.24567 6.30624 6.33270 6.52339 6.54446 6.62636 6.73555 6.97395 7.00534 7.13159 7.19931 7.46756 7.71096 8.14013 8.42668 9.53788 10.11079 10.45830 11.46483 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.023584 B = 0.001832 C = 0.001761 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1186.942621 B =15277.831631 C =15893.436212 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.014 4.014 3 Si 0.906 3.094 4 H -0.286 1.286 5 H -0.291 1.291 6 H -0.286 1.286 7 C -0.238 4.238 8 H 0.070 0.930 9 N -0.724 5.724 10 C 0.183 3.817 11 H 0.048 0.952 12 C -0.137 4.137 13 C -0.114 4.114 14 C -0.124 4.124 15 C 0.149 3.851 16 H 0.089 0.911 17 N -0.715 5.715 18 C 0.561 3.439 19 O -0.539 6.539 20 C -0.115 4.115 21 C -0.090 4.090 22 C -0.069 4.069 23 C 0.081 3.919 24 N -0.487 5.487 25 C 0.460 3.540 26 O -0.442 6.442 27 N -0.596 5.596 28 H 0.426 0.574 29 C 0.043 3.957 30 C -0.040 4.040 31 C -0.130 4.130 32 H 0.255 0.745 33 H 0.383 0.617 34 H 0.055 0.945 35 H 0.062 0.938 36 H 0.056 0.944 37 H 0.060 0.940 38 H 0.060 0.940 39 H 0.061 0.939 40 H 0.399 0.601 41 H 0.138 0.862 42 H 0.140 0.860 43 H 0.413 0.587 44 H 0.141 0.859 45 H 0.065 0.935 46 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.444 -29.337 4.976 29.759 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.210 4.210 3 Si 0.737 3.263 4 H -0.213 1.213 5 H -0.217 1.217 6 H -0.213 1.213 7 C -0.369 4.369 8 H 0.088 0.912 9 N -0.364 5.364 10 C 0.073 3.927 11 H 0.066 0.934 12 C -0.177 4.177 13 C -0.153 4.153 14 C -0.163 4.163 15 C 0.045 3.955 16 H 0.107 0.893 17 N -0.366 5.366 18 C 0.347 3.653 19 O -0.418 6.418 20 C -0.120 4.120 21 C -0.111 4.111 22 C -0.089 4.089 23 C -0.038 4.038 24 N -0.219 5.219 25 C 0.155 3.845 26 O -0.244 6.244 27 N -0.221 5.221 28 H 0.266 0.734 29 C -0.066 4.066 30 C -0.062 4.062 31 C -0.169 4.169 32 H 0.065 0.935 33 H 0.217 0.783 34 H 0.074 0.926 35 H 0.081 0.919 36 H 0.075 0.925 37 H 0.078 0.922 38 H 0.079 0.921 39 H 0.080 0.920 40 H 0.235 0.765 41 H 0.156 0.844 42 H 0.158 0.842 43 H 0.272 0.728 44 H 0.158 0.842 45 H 0.084 0.916 46 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -0.380 -29.136 5.670 29.685 hybrid contribution 0.897 0.374 -0.317 1.022 sum 0.517 -28.762 5.353 29.260 Atomic orbital electron populations 1.69647 1.05079 1.25732 1.57758 1.24730 0.95512 0.97652 1.03072 0.86281 0.78526 0.83615 0.77847 1.21294 1.21741 1.21299 1.19200 0.90994 0.84085 1.42617 0.91204 1.42387 1.05734 0.99677 1.88624 1.20097 0.94117 0.85533 0.92973 0.93357 1.22294 0.99721 0.95231 1.00481 1.21486 0.98529 0.95377 0.99941 1.21886 1.00172 0.98846 0.95351 1.21072 0.94492 0.85939 0.94018 0.89285 1.46070 1.10663 1.20963 1.58882 1.18004 0.87549 0.81756 0.77943 1.90788 1.14045 1.78324 1.58608 1.19672 0.93589 0.95624 1.03073 1.20816 0.92025 0.99067 0.99229 1.19943 1.00706 0.90700 0.97557 1.18991 0.89417 0.94876 1.00564 1.70665 1.28610 1.04748 1.17878 1.20385 0.80641 0.89320 0.94111 1.84821 1.92990 1.13189 1.33372 1.43408 1.09870 1.19084 1.49706 0.73432 1.18453 0.96224 0.89525 1.02380 1.19984 0.99884 0.90380 0.95928 1.22100 0.99379 0.93290 1.02122 0.93504 0.78325 0.92639 0.91910 0.92514 0.92171 0.92150 0.91983 0.76503 0.84418 0.84220 0.72850 0.84161 0.91621 0.91202 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.82 13.06 55.49 0.72 -27.10 16 2 C -0.01 -0.39 5.50 -17.43 -0.10 -0.49 16 3 Si 0.91 22.27 29.55 -169.99 -5.02 17.25 16 4 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 5 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 6 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 7 C -0.24 -6.49 9.93 -15.06 -0.15 -6.64 16 8 H 0.07 1.86 7.83 -52.49 -0.41 1.45 16 9 N -0.72 -17.57 5.12 -53.42 -0.27 -17.85 16 10 C 0.18 3.48 2.77 -67.93 -0.19 3.30 16 11 H 0.05 0.96 8.08 -51.93 -0.42 0.55 16 12 C -0.14 -2.36 5.50 -26.73 -0.15 -2.50 16 13 C -0.11 -1.61 5.92 -26.73 -0.16 -1.77 16 14 C -0.12 -1.62 5.49 -26.73 -0.15 -1.76 16 15 C 0.15 2.01 2.45 -67.93 -0.17 1.84 16 16 H 0.09 1.36 7.57 -51.93 -0.39 0.97 16 17 N -0.72 -8.10 5.03 -54.85 -0.28 -8.38 16 18 C 0.56 7.00 7.72 -12.48 -0.10 6.91 16 19 O -0.54 -8.53 15.99 5.27 0.08 -8.45 16 20 C -0.11 -1.17 5.88 -104.92 -0.62 -1.79 16 21 C -0.09 -0.75 9.46 -39.60 -0.37 -1.12 16 22 C -0.07 -0.61 10.03 -39.64 -0.40 -1.00 16 23 C 0.08 0.84 7.22 -84.61 -0.61 0.22 16 24 N -0.49 -5.17 11.29 -12.18 -0.14 -5.31 16 25 C 0.46 3.61 9.39 -88.91 -0.83 2.77 16 26 O -0.44 -2.18 13.62 -17.30 -0.24 -2.42 16 27 N -0.60 -3.96 6.27 -11.94 -0.07 -4.04 16 28 H 0.43 1.45 8.96 -40.82 -0.37 1.08 16 29 C 0.04 0.39 7.28 -83.89 -0.61 -0.22 16 30 C -0.04 -0.39 9.61 -39.11 -0.38 -0.76 16 31 C -0.13 -1.98 4.86 -26.73 -0.13 -2.11 16 32 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 33 H 0.38 9.84 7.80 -40.82 -0.32 9.52 16 34 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 35 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 36 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 37 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 38 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 39 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 40 H 0.40 3.50 6.60 -40.82 -0.27 3.23 16 41 H 0.14 0.81 6.36 -52.49 -0.33 0.48 16 42 H 0.14 0.97 8.06 -52.49 -0.42 0.55 16 43 H 0.41 -0.26 9.06 45.56 0.41 0.15 16 44 H 0.14 1.29 7.64 -52.49 -0.40 0.89 16 45 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 46 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 LS Contribution 381.68 15.07 5.75 5.75 Total: -1.00 -35.63 381.68 -10.00 -45.63 By element: Atomic # 1 Polarization: 15.47 SS G_CDS: -5.44 Total: 10.03 kcal Atomic # 6 Polarization: -0.03 SS G_CDS: -5.10 Total: -5.13 kcal Atomic # 7 Polarization: -62.63 SS G_CDS: -0.04 Total: -62.67 kcal Atomic # 8 Polarization: -10.71 SS G_CDS: -0.15 Total: -10.87 kcal Atomic # 14 Polarization: 22.27 SS G_CDS: -5.02 Total: 17.25 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -35.63 -10.00 -45.63 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981357298.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.219 kcal (2) G-P(sol) polarization free energy of solvation -35.627 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.592 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.000 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.627 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.592 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds