Wall clock time and date at job start Wed Apr 1 2020 02:31:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86800 * 119.99804 * 2 1 4 4 H 1.48498 * 109.47425 * 239.99993 * 3 2 1 5 5 H 1.48496 * 109.47379 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.46924 * 120.00095 * 3 2 1 7 7 C 1.38807 * 120.00293 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00676 * 179.97438 * 7 2 1 9 9 N 1.36937 * 119.99993 * 359.97438 * 7 2 1 10 10 C 1.46503 * 120.00593 * 180.02562 * 9 7 2 11 11 H 1.09006 * 109.46855 * 34.99995 * 10 9 7 12 12 C 1.52999 * 109.47111 * 275.00415 * 10 9 7 13 13 C 1.53004 * 109.47133 * 179.97438 * 12 10 9 14 14 C 1.52998 * 109.46770 * 59.99995 * 13 12 10 15 15 C 1.53002 * 109.47452 * 300.00255 * 14 13 12 16 16 H 1.09006 * 109.46554 * 299.99921 * 15 14 13 17 17 N 1.46500 * 109.47538 * 180.02562 * 15 14 13 18 18 C 1.34769 * 120.00011 * 84.99400 * 17 15 14 19 19 O 1.21605 * 120.00295 * 0.02562 * 18 17 15 20 20 C 1.47518 * 120.00076 * 180.02562 * 18 17 15 21 21 C 1.40147 * 119.94440 * 0.02562 * 20 18 17 22 22 C 1.36210 * 120.49295 * 179.97438 * 21 20 18 23 23 C 1.40024 * 120.08431 * 0.02562 * 22 21 20 24 24 N 1.35563 * 133.26483 * 179.97438 * 23 22 21 25 25 C 1.30924 * 109.70434 * 180.02562 * 24 23 22 26 26 O 1.35203 * 125.00550 * 179.97438 * 25 24 23 27 27 N 1.36251 * 109.97936 * 0.26438 * 25 24 23 28 28 H 0.96994 * 126.39987 * 179.73800 * 27 25 24 29 29 C 1.38566 * 107.20063 * 359.57541 * 27 25 24 30 30 C 1.38209 * 133.89384 * 180.08144 * 29 27 25 31 31 C 1.52998 * 109.47335 * 59.99777 * 15 14 13 32 32 H 0.96998 * 120.00033 * 0.02562 * 1 2 3 33 33 H 0.97000 * 119.99813 * 0.02562 * 9 7 2 34 34 H 1.08997 * 109.47197 * 299.99494 * 12 10 9 35 35 H 1.09003 * 109.47342 * 59.99682 * 12 10 9 36 36 H 1.08994 * 109.46933 * 179.97438 * 13 12 10 37 37 H 1.08997 * 109.47260 * 300.00183 * 13 12 10 38 38 H 1.09002 * 109.47307 * 179.97438 * 14 13 12 39 39 H 1.09006 * 109.47177 * 59.99796 * 14 13 12 40 40 H 0.97001 * 119.99740 * 265.00278 * 17 15 14 41 41 H 1.07999 * 119.75704 * 0.02562 * 21 20 18 42 42 H 1.08001 * 119.96012 * 179.97438 * 22 21 20 43 43 H 0.96700 * 114.00205 * 90.02699 * 26 25 24 44 44 H 1.08000 * 120.20757 * 0.36058 * 30 29 27 45 45 H 1.08997 * 109.47005 * 60.00296 * 31 15 14 46 46 H 1.08996 * 109.47219 * 180.02562 * 31 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1039 1.6965 -1.2125 5 1 1.2852 2.7465 0.0006 6 1 3.1039 1.6964 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3257 -2.3880 -0.0005 10 6 2.0581 -3.6568 -0.0005 11 1 2.9689 -3.5506 0.5889 12 6 2.4221 -4.0356 -1.4375 13 6 3.1876 -5.3604 -1.4375 14 6 2.3108 -6.4559 -0.8277 15 6 1.9467 -6.0771 0.6093 16 1 2.8575 -5.9705 1.1987 17 7 1.1077 -7.1264 1.1933 18 6 1.6781 -8.2080 1.7599 19 8 2.8893 -8.3128 1.7868 20 6 0.8332 -9.2649 2.3476 21 6 -0.5626 -9.1433 2.3155 22 6 -1.3534 -10.1126 2.8543 23 6 -0.7747 -11.2417 3.4468 24 7 -1.2894 -12.3414 4.0496 25 6 -0.3170 -13.1230 4.4467 26 8 -0.4822 -14.3033 5.0851 27 7 0.8859 -12.5685 4.1274 28 1 1.7605 -12.9439 4.3142 29 6 0.6263 -11.3697 3.4827 30 6 1.4250 -10.3838 2.9348 31 6 1.1813 -4.7524 0.6092 32 1 -0.4850 0.8400 -0.0004 33 1 0.3557 -2.3880 -0.0005 34 1 1.5114 -4.1419 -2.0270 35 1 3.0471 -3.2552 -1.8718 36 1 3.4464 -5.6304 -2.4612 37 1 4.0982 -5.2538 -0.8481 38 1 2.8559 -7.3998 -0.8281 39 1 1.4000 -6.5625 -1.4171 40 1 0.1415 -7.0427 1.1721 41 1 -1.0147 -8.2749 1.8595 42 1 -2.4281 -10.0099 2.8252 43 1 -0.5482 -15.0649 4.4930 44 1 2.5005 -10.4788 2.9608 45 1 0.2707 -4.8589 0.0198 46 1 0.9224 -4.4823 1.6330 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000981357298.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:31:32 Heat of formation + Delta-G solvation = -27.364577 kcal Electronic energy + Delta-G solvation = -28762.326757 eV Core-core repulsion = 24651.490406 eV Total energy + Delta-G solvation = -4110.836351 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.164 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -43.28864 -41.21434 -39.53384 -38.86125 -37.28389 -36.23378 -34.82973 -34.38044 -32.91360 -31.30406 -31.16574 -29.92621 -29.10160 -25.70616 -25.06248 -23.91825 -23.22508 -22.85772 -22.52414 -21.48033 -20.86400 -20.08506 -19.45281 -18.86089 -18.46125 -17.71001 -17.25963 -16.82734 -16.48021 -16.12547 -15.83953 -15.56607 -15.41141 -15.13558 -15.08715 -14.99746 -14.95169 -14.66882 -14.28636 -14.12960 -13.56171 -13.37017 -13.06165 -12.88335 -12.78469 -12.67251 -12.64079 -12.25711 -12.13287 -12.01232 -11.93641 -11.93150 -11.60984 -11.49211 -11.34841 -11.18840 -10.92147 -10.82852 -10.07896 -9.57907 -9.26976 -8.96531 -7.91253 -5.18631 -0.55294 0.28642 1.15699 1.37391 1.48945 1.51018 1.56991 1.96514 2.12194 2.58820 2.68639 2.81168 3.40291 3.41979 3.64906 3.70017 3.91118 3.95988 4.06803 4.09977 4.14127 4.20445 4.29376 4.35571 4.47133 4.49640 4.57766 4.62495 4.71325 4.81014 4.93748 5.05119 5.10212 5.16895 5.21501 5.25684 5.26715 5.27493 5.39567 5.48847 5.53454 5.57123 5.61753 5.70068 5.85343 6.31542 6.55945 6.57115 6.62675 7.20649 7.37959 8.14449 8.38002 9.31773 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.023584 B = 0.001832 C = 0.001761 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1186.942621 B =15277.831631 C =15893.436212 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.967 5.967 2 C -0.075 4.075 3 Si 0.968 3.032 4 H -0.279 1.279 5 H -0.296 1.296 6 H -0.281 1.281 7 C -0.238 4.238 8 H 0.072 0.928 9 N -0.735 5.735 10 C 0.176 3.824 11 H 0.035 0.965 12 C -0.127 4.127 13 C -0.106 4.106 14 C -0.116 4.116 15 C 0.159 3.841 16 H 0.070 0.930 17 N -0.705 5.705 18 C 0.563 3.437 19 O -0.577 6.577 20 C -0.129 4.129 21 C -0.081 4.081 22 C -0.076 4.076 23 C 0.066 3.934 24 N -0.526 5.526 25 C 0.473 3.527 26 O -0.442 6.442 27 N -0.584 5.584 28 H 0.440 0.560 29 C 0.034 3.966 30 C -0.040 4.040 31 C -0.116 4.116 32 H 0.250 0.750 33 H 0.374 0.626 34 H 0.054 0.946 35 H 0.040 0.960 36 H 0.075 0.925 37 H 0.057 0.943 38 H 0.062 0.938 39 H 0.076 0.924 40 H 0.414 0.586 41 H 0.162 0.838 42 H 0.156 0.844 43 H 0.437 0.563 44 H 0.140 0.860 45 H 0.078 0.922 46 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.445 -31.118 4.925 31.508 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.618 5.618 2 C -0.267 4.267 3 Si 0.797 3.203 4 H -0.206 1.206 5 H -0.222 1.222 6 H -0.207 1.207 7 C -0.370 4.370 8 H 0.090 0.910 9 N -0.375 5.375 10 C 0.067 3.933 11 H 0.053 0.947 12 C -0.167 4.167 13 C -0.145 4.145 14 C -0.155 4.155 15 C 0.054 3.946 16 H 0.088 0.912 17 N -0.356 5.356 18 C 0.351 3.649 19 O -0.458 6.458 20 C -0.134 4.134 21 C -0.102 4.102 22 C -0.095 4.095 23 C -0.054 4.054 24 N -0.259 5.259 25 C 0.169 3.831 26 O -0.248 6.248 27 N -0.209 5.209 28 H 0.283 0.717 29 C -0.075 4.075 30 C -0.062 4.062 31 C -0.155 4.155 32 H 0.059 0.941 33 H 0.206 0.794 34 H 0.073 0.927 35 H 0.058 0.942 36 H 0.094 0.906 37 H 0.076 0.924 38 H 0.081 0.919 39 H 0.094 0.906 40 H 0.252 0.748 41 H 0.180 0.820 42 H 0.173 0.827 43 H 0.301 0.699 44 H 0.158 0.842 45 H 0.097 0.903 46 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -0.351 -30.993 5.611 31.498 hybrid contribution 0.917 0.748 -0.232 1.206 sum 0.566 -30.245 5.379 30.725 Atomic orbital electron populations 1.69791 1.06377 1.25955 1.59700 1.25475 0.96357 1.00780 1.04070 0.85297 0.77259 0.79684 0.78049 1.20568 1.22206 1.20697 1.19548 0.91307 0.85365 1.40736 0.91033 1.42557 1.05456 1.00745 1.88699 1.20316 0.93874 0.84779 0.94284 0.94650 1.22099 0.99662 0.96380 0.98536 1.21413 0.98097 0.93752 1.01256 1.21818 1.00572 0.98306 0.94794 1.20781 0.93747 0.85631 0.94427 0.91150 1.45871 1.11250 1.20113 1.58373 1.18292 0.87237 0.82025 0.77302 1.90768 1.15743 1.79172 1.60164 1.19535 0.94150 0.95363 1.04347 1.20994 0.91044 0.99613 0.98514 1.20173 1.01613 0.90371 0.97372 1.19356 0.90048 0.95295 1.00678 1.70644 1.29961 1.05592 1.19666 1.20454 0.80532 0.89688 0.92467 1.84792 1.92803 1.13163 1.34013 1.43336 1.10484 1.18229 1.48887 0.71673 1.18428 0.95906 0.90213 1.02940 1.20004 0.99953 0.90450 0.95745 1.21885 0.99215 0.92879 1.01486 0.94114 0.79383 0.92700 0.94155 0.90637 0.92391 0.91894 0.90559 0.74784 0.82046 0.82672 0.69889 0.84212 0.90338 0.91929 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -58.44 13.06 21.65 0.28 -58.16 16 2 C -0.07 -4.25 5.50 84.86 0.47 -3.78 16 3 Si 0.97 46.11 29.55 68.60 2.03 48.14 16 4 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 5 H -0.30 -14.19 7.11 99.48 0.71 -13.49 16 6 H -0.28 -12.98 7.11 99.48 0.71 -12.27 16 7 C -0.24 -13.07 9.93 84.03 0.83 -12.24 16 8 H 0.07 3.83 7.83 -2.91 -0.02 3.80 16 9 N -0.73 -36.01 5.12 -322.93 -1.65 -37.67 16 10 C 0.18 6.68 2.77 44.99 0.12 6.81 16 11 H 0.04 1.43 8.08 -2.38 -0.02 1.41 16 12 C -0.13 -4.28 5.50 30.60 0.17 -4.11 16 13 C -0.11 -2.81 5.92 30.59 0.18 -2.63 16 14 C -0.12 -2.80 5.49 30.59 0.17 -2.63 16 15 C 0.16 4.10 2.45 44.99 0.11 4.21 16 16 H 0.07 2.13 7.57 -2.38 -0.02 2.11 16 17 N -0.71 -14.80 5.03 -445.71 -2.24 -17.04 16 18 C 0.56 13.49 7.72 86.69 0.67 14.16 16 19 O -0.58 -18.07 15.99 -4.05 -0.06 -18.13 16 20 C -0.13 -2.49 5.88 -20.05 -0.12 -2.60 16 21 C -0.08 -1.19 9.46 22.26 0.21 -0.98 16 22 C -0.08 -1.21 10.03 22.23 0.22 -0.98 16 23 C 0.07 1.28 7.22 39.61 0.29 1.57 16 24 N -0.53 -10.56 11.29 -306.24 -3.46 -14.02 16 25 C 0.47 6.66 9.39 179.75 1.69 8.34 16 26 O -0.44 -3.41 13.62 -84.83 -1.16 -4.57 16 27 N -0.58 -6.87 6.27 -302.69 -1.90 -8.77 16 28 H 0.44 2.24 8.96 -92.71 -0.83 1.41 16 29 C 0.03 0.59 7.28 38.68 0.28 0.87 16 30 C -0.04 -0.74 9.61 22.58 0.22 -0.52 16 31 C -0.12 -3.43 4.86 30.59 0.15 -3.28 16 32 H 0.25 14.74 8.31 -92.71 -0.77 13.97 16 33 H 0.37 19.46 7.80 -92.71 -0.72 18.74 16 34 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 35 H 0.04 1.52 8.14 -2.39 -0.02 1.50 16 36 H 0.07 1.75 8.14 -2.39 -0.02 1.74 16 37 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 38 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 39 H 0.08 1.65 8.14 -2.38 -0.02 1.63 16 40 H 0.41 6.27 6.60 -92.71 -0.61 5.66 16 41 H 0.16 1.46 6.36 -2.91 -0.02 1.44 16 42 H 0.16 1.89 8.06 -2.91 -0.02 1.86 16 43 H 0.44 -1.64 9.06 -74.06 -0.67 -2.31 16 44 H 0.14 2.53 7.64 -2.91 -0.02 2.51 16 45 H 0.08 2.14 8.14 -2.39 -0.02 2.12 16 46 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 Total: -1.00 -77.23 381.68 -4.27 -81.50 By element: Atomic # 1 Polarization: 28.29 SS G_CDS: -1.77 Total: 26.52 kcal Atomic # 6 Polarization: -3.47 SS G_CDS: 5.66 Total: 2.19 kcal Atomic # 7 Polarization: -126.69 SS G_CDS: -8.97 Total: -135.66 kcal Atomic # 8 Polarization: -21.48 SS G_CDS: -1.22 Total: -22.70 kcal Atomic # 14 Polarization: 46.11 SS G_CDS: 2.03 Total: 48.14 kcal Total: -77.23 -4.27 -81.50 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981357298.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.133 kcal (2) G-P(sol) polarization free energy of solvation -77.230 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.097 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.267 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.497 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.365 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds