Wall clock time and date at job start Wed Apr 1 2020 02:31:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86795 * 120.00074 * 2 1 4 4 H 1.48497 * 109.47306 * 240.00325 * 3 2 1 5 5 H 1.48498 * 109.47382 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.47182 * 120.00236 * 3 2 1 7 7 C 1.38812 * 119.99438 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99389 * 179.97438 * 7 2 1 9 9 N 1.36933 * 120.00422 * 359.97438 * 7 2 1 10 10 C 1.46500 * 119.99983 * 179.97438 * 9 7 2 11 11 H 1.09002 * 109.47092 * 324.99883 * 10 9 7 12 12 C 1.52997 * 109.47007 * 84.99832 * 10 9 7 13 13 C 1.52999 * 109.47317 * 179.97438 * 12 10 9 14 14 C 1.53005 * 109.47159 * 300.00546 * 13 12 10 15 15 C 1.52997 * 109.47452 * 59.99536 * 14 13 12 16 16 H 1.09002 * 109.46695 * 59.99734 * 15 14 13 17 17 N 1.46492 * 109.47244 * 180.02562 * 15 14 13 18 18 C 1.34780 * 119.99930 * 274.99857 * 17 15 14 19 19 O 1.21601 * 120.00025 * 0.02562 * 18 17 15 20 20 C 1.47502 * 120.00103 * 180.02562 * 18 17 15 21 21 C 1.40158 * 119.94884 * 359.97438 * 20 18 17 22 22 C 1.36211 * 120.49569 * 179.97438 * 21 20 18 23 23 C 1.40017 * 120.08504 * 0.02562 * 22 21 20 24 24 N 1.35561 * 133.26947 * 179.97438 * 23 22 21 25 25 C 1.30926 * 109.71236 * 180.02562 * 24 23 22 26 26 O 1.35198 * 125.01039 * 179.97438 * 25 24 23 27 27 N 1.36250 * 109.97206 * 0.02562 * 25 24 23 28 28 H 0.96998 * 126.39606 * 179.97438 * 27 25 24 29 29 C 1.38567 * 107.20488 * 359.97438 * 27 25 24 30 30 C 1.38214 * 133.89201 * 180.28540 * 29 27 25 31 31 C 1.53000 * 109.47023 * 204.99625 * 10 9 7 32 32 H 0.97001 * 120.00131 * 359.97438 * 1 2 3 33 33 H 0.96997 * 119.99743 * 0.02562 * 9 7 2 34 34 H 1.08996 * 109.47853 * 300.00060 * 12 10 9 35 35 H 1.09002 * 109.47153 * 60.00089 * 12 10 9 36 36 H 1.09002 * 109.46716 * 60.00091 * 13 12 10 37 37 H 1.09000 * 109.47486 * 180.02562 * 13 12 10 38 38 H 1.09001 * 109.46812 * 179.97438 * 14 13 12 39 39 H 1.09002 * 109.46935 * 299.99411 * 14 13 12 40 40 H 0.96998 * 120.00353 * 95.00142 * 17 15 14 41 41 H 1.08003 * 119.75307 * 359.95641 * 21 20 18 42 42 H 1.08000 * 119.95754 * 179.97438 * 22 21 20 43 43 H 0.96709 * 114.00065 * 90.02815 * 26 25 24 44 44 H 1.08003 * 120.20719 * 359.94111 * 30 29 27 45 45 H 1.08992 * 109.47399 * 300.00063 * 31 10 9 46 46 H 1.09004 * 109.46724 * 60.00549 * 31 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1039 1.6964 -1.2125 5 1 1.2853 2.7464 0.0006 6 1 3.1040 1.6963 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3255 -2.3881 -0.0005 10 6 2.0580 -3.6568 -0.0017 11 1 2.9682 -3.5503 -0.5918 12 6 2.4230 -4.0362 1.4349 13 6 3.1874 -5.3616 1.4338 14 6 2.3092 -6.4564 0.8245 15 6 1.9442 -6.0770 -0.6120 16 1 2.8545 -5.9708 -1.2022 17 7 1.1029 -7.1249 -1.1951 18 6 1.6711 -8.2074 -1.7625 19 8 2.8821 -8.3144 -1.7900 20 6 0.8240 -9.2623 -2.3502 21 6 -0.5717 -9.1382 -2.3175 22 6 -1.3645 -10.1054 -2.8572 23 6 -0.7882 -11.2352 -3.4505 24 7 -1.3051 -12.3337 -4.0535 25 6 -0.3344 -13.1175 -4.4505 26 8 -0.5020 -14.2978 -5.0883 27 7 0.8695 -12.5687 -4.1251 28 1 1.7433 -12.9486 -4.3070 29 6 0.6125 -11.3664 -3.4858 30 6 1.4134 -10.3803 -2.9414 31 6 1.1802 -4.7519 -0.6110 32 1 -0.4850 0.8400 0.0004 33 1 0.3555 -2.3880 -0.0005 34 1 3.0482 -3.2562 1.8691 35 1 1.5127 -4.1427 2.0250 36 1 4.0976 -5.2555 0.8436 37 1 3.4470 -5.6321 2.4573 38 1 2.8540 -7.4005 0.8234 39 1 1.3990 -6.5625 1.4147 40 1 0.1369 -7.0398 -1.1729 41 1 -1.0219 -8.2693 -1.8606 42 1 -2.4390 -10.0011 -2.8268 43 1 -0.5312 -14.2234 -6.0520 44 1 2.4888 -10.4761 -2.9703 45 1 0.2700 -4.8584 -0.0210 46 1 0.9202 -4.4815 -1.6345 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000981357299.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:31:37 Heat of formation + Delta-G solvation = 1.574571 kcal Electronic energy + Delta-G solvation = -28761.897996 eV Core-core repulsion = 24652.316540 eV Total energy + Delta-G solvation = -4109.581455 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.164 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.66247 -40.22213 -38.65496 -37.93981 -36.60622 -34.73950 -33.73558 -33.36392 -31.13436 -30.53963 -30.26910 -28.74226 -27.69795 -24.35047 -23.66626 -23.27335 -22.22507 -21.97811 -21.37989 -20.43311 -19.57276 -19.54538 -18.41147 -17.84519 -17.14485 -16.86112 -16.22762 -16.04722 -15.16938 -15.05567 -14.67145 -14.51361 -14.38993 -14.36869 -13.95566 -13.79341 -13.58215 -13.51947 -13.13420 -12.70330 -12.55882 -12.17916 -12.11379 -12.01381 -11.92374 -11.25395 -10.98989 -10.93287 -10.86144 -10.71792 -10.53433 -10.35036 -10.32026 -10.17630 -10.13335 -9.72621 -9.59806 -9.05028 -8.93242 -8.85845 -8.56825 -6.95753 -5.76336 -3.04881 0.13806 0.94374 1.72965 2.00721 2.79288 3.04269 3.24489 3.44703 3.49309 3.49983 3.56452 3.98553 4.46543 4.53010 4.58693 4.72213 4.80406 4.86894 4.96127 5.07493 5.13033 5.33001 5.50950 5.56222 5.60980 5.69309 5.71263 5.77845 5.87551 5.90967 5.92306 5.97907 6.03405 6.14733 6.15266 6.24574 6.30716 6.33285 6.52494 6.54522 6.62765 6.73621 6.97400 7.00608 7.13169 7.19976 7.46757 7.70905 8.14011 8.42471 9.53573 10.10911 10.45673 11.46284 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.023464 B = 0.001833 C = 0.001762 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1193.034033 B =15267.723759 C =15886.646329 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.014 4.014 3 Si 0.906 3.094 4 H -0.286 1.286 5 H -0.292 1.292 6 H -0.286 1.286 7 C -0.238 4.238 8 H 0.070 0.930 9 N -0.724 5.724 10 C 0.183 3.817 11 H 0.048 0.952 12 C -0.137 4.137 13 C -0.114 4.114 14 C -0.124 4.124 15 C 0.149 3.851 16 H 0.089 0.911 17 N -0.715 5.715 18 C 0.561 3.439 19 O -0.539 6.539 20 C -0.115 4.115 21 C -0.090 4.090 22 C -0.069 4.069 23 C 0.081 3.919 24 N -0.487 5.487 25 C 0.460 3.540 26 O -0.442 6.442 27 N -0.597 5.597 28 H 0.426 0.574 29 C 0.043 3.957 30 C -0.040 4.040 31 C -0.130 4.130 32 H 0.255 0.745 33 H 0.383 0.617 34 H 0.062 0.938 35 H 0.055 0.945 36 H 0.059 0.941 37 H 0.056 0.944 38 H 0.060 0.940 39 H 0.062 0.938 40 H 0.399 0.601 41 H 0.138 0.862 42 H 0.140 0.860 43 H 0.413 0.587 44 H 0.141 0.859 45 H 0.065 0.935 46 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.396 -27.665 -8.088 28.825 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.210 4.210 3 Si 0.737 3.263 4 H -0.213 1.213 5 H -0.217 1.217 6 H -0.213 1.213 7 C -0.369 4.369 8 H 0.088 0.912 9 N -0.364 5.364 10 C 0.073 3.927 11 H 0.066 0.934 12 C -0.177 4.177 13 C -0.153 4.153 14 C -0.163 4.163 15 C 0.045 3.955 16 H 0.107 0.893 17 N -0.366 5.366 18 C 0.347 3.653 19 O -0.418 6.418 20 C -0.120 4.120 21 C -0.111 4.111 22 C -0.089 4.089 23 C -0.038 4.038 24 N -0.219 5.219 25 C 0.155 3.845 26 O -0.244 6.244 27 N -0.221 5.221 28 H 0.266 0.734 29 C -0.066 4.066 30 C -0.062 4.062 31 C -0.169 4.169 32 H 0.065 0.935 33 H 0.217 0.783 34 H 0.081 0.919 35 H 0.074 0.926 36 H 0.078 0.922 37 H 0.075 0.925 38 H 0.079 0.921 39 H 0.080 0.920 40 H 0.235 0.765 41 H 0.156 0.844 42 H 0.158 0.842 43 H 0.272 0.728 44 H 0.158 0.842 45 H 0.084 0.916 46 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -0.358 -28.031 -7.725 29.078 hybrid contribution 0.916 0.819 -0.513 1.331 sum 0.558 -27.212 -8.238 28.437 Atomic orbital electron populations 1.69649 1.05079 1.25731 1.57762 1.24733 0.95515 0.97654 1.03080 0.86279 0.78524 0.83609 0.77847 1.21297 1.21742 1.21298 1.19200 0.90993 0.84088 1.42608 0.91206 1.42385 1.05734 0.99679 1.88624 1.20095 0.94103 0.85529 0.92981 0.93359 1.22292 0.99734 0.95226 1.00476 1.21488 0.98519 0.95374 0.99952 1.21888 1.00176 0.98859 0.95355 1.21060 0.94451 0.85958 0.94043 0.89286 1.46072 1.10663 1.20956 1.58892 1.18002 0.87556 0.81732 0.77961 1.90787 1.14076 1.78268 1.58629 1.19670 0.93587 0.95820 1.02881 1.20820 0.92014 0.99143 0.99162 1.19941 1.00706 0.90857 0.97400 1.18989 0.89390 0.94573 1.00891 1.70663 1.28683 1.03503 1.19054 1.20387 0.80609 0.86831 0.96628 1.84818 1.92982 1.21023 1.25574 1.43414 1.09840 1.17989 1.50828 0.73435 1.18452 0.96256 0.88525 1.03349 1.19984 0.99874 0.90512 0.95805 1.22094 0.99393 0.93296 1.02112 0.93506 0.78322 0.91905 0.92642 0.92177 0.92509 0.92138 0.91971 0.76500 0.84418 0.84219 0.72824 0.84161 0.91625 0.91210 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.79 13.06 55.49 0.72 -27.07 16 2 C -0.01 -0.40 5.50 -17.43 -0.10 -0.49 16 3 Si 0.91 22.24 29.55 -169.99 -5.02 17.22 16 4 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 5 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 6 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 7 C -0.24 -6.48 9.93 -15.06 -0.15 -6.63 16 8 H 0.07 1.86 7.83 -52.49 -0.41 1.44 16 9 N -0.72 -17.55 5.12 -53.43 -0.27 -17.82 16 10 C 0.18 3.48 2.77 -67.93 -0.19 3.29 16 11 H 0.05 0.96 8.08 -51.93 -0.42 0.54 16 12 C -0.14 -2.36 5.50 -26.73 -0.15 -2.51 16 13 C -0.11 -1.61 5.92 -26.73 -0.16 -1.77 16 14 C -0.12 -1.63 5.49 -26.73 -0.15 -1.78 16 15 C 0.15 2.01 2.45 -67.96 -0.17 1.84 16 16 H 0.09 1.36 7.58 -51.93 -0.39 0.97 16 17 N -0.72 -8.10 5.03 -54.88 -0.28 -8.38 16 18 C 0.56 7.00 7.72 -12.48 -0.10 6.91 16 19 O -0.54 -8.53 15.99 5.28 0.08 -8.44 16 20 C -0.11 -1.17 5.88 -104.92 -0.62 -1.79 16 21 C -0.09 -0.75 9.46 -39.59 -0.37 -1.12 16 22 C -0.07 -0.61 10.03 -39.64 -0.40 -1.00 16 23 C 0.08 0.84 7.22 -84.61 -0.61 0.22 16 24 N -0.49 -5.17 11.29 -12.18 -0.14 -5.31 16 25 C 0.46 3.61 9.39 -88.91 -0.83 2.77 16 26 O -0.44 -2.18 13.62 -17.29 -0.24 -2.42 16 27 N -0.60 -3.96 6.27 -11.94 -0.07 -4.04 16 28 H 0.43 1.45 8.96 -40.82 -0.37 1.08 16 29 C 0.04 0.39 7.28 -83.89 -0.61 -0.22 16 30 C -0.04 -0.39 9.61 -39.11 -0.38 -0.76 16 31 C -0.13 -1.98 4.85 -26.75 -0.13 -2.11 16 32 H 0.26 7.39 8.31 -40.82 -0.34 7.06 16 33 H 0.38 9.83 7.80 -40.82 -0.32 9.51 16 34 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 35 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 36 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 37 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 38 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 39 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 40 H 0.40 3.50 6.60 -40.82 -0.27 3.24 16 41 H 0.14 0.81 6.36 -52.48 -0.33 0.48 16 42 H 0.14 0.97 8.06 -52.49 -0.42 0.55 16 43 H 0.41 -0.23 9.06 45.56 0.41 0.19 16 44 H 0.14 1.29 7.64 -52.48 -0.40 0.89 16 45 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 46 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 LS Contribution 381.68 15.07 5.75 5.75 Total: -1.00 -35.56 381.68 -10.00 -45.56 By element: Atomic # 1 Polarization: 15.52 SS G_CDS: -5.44 Total: 10.08 kcal Atomic # 6 Polarization: -0.04 SS G_CDS: -5.10 Total: -5.14 kcal Atomic # 7 Polarization: -62.58 SS G_CDS: -0.04 Total: -62.61 kcal Atomic # 8 Polarization: -10.71 SS G_CDS: -0.15 Total: -10.86 kcal Atomic # 14 Polarization: 22.24 SS G_CDS: -5.02 Total: 17.22 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -35.56 -10.00 -45.56 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981357299.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.139 kcal (2) G-P(sol) polarization free energy of solvation -35.565 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.574 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.000 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.565 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.575 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds