Wall clock time and date at job start Wed Apr 1 2020 02:52:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86797 * 119.99993 * 2 1 4 4 H 1.48501 * 109.47204 * 239.99630 * 3 2 1 5 5 H 1.48497 * 109.47400 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47086 * 120.00013 * 3 2 1 7 7 C 1.38817 * 119.99877 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99902 * 194.25829 * 7 2 1 9 9 N 1.36939 * 120.00011 * 14.26201 * 7 2 1 10 10 C 1.46925 * 120.62940 * 31.01182 * 9 7 2 11 11 C 1.53191 * 108.77637 * 126.37180 * 10 9 7 12 12 C 1.53041 * 109.31092 * 54.63033 * 11 10 9 13 13 C 1.53042 * 109.53994 * 298.63576 * 12 11 10 14 14 C 1.46927 * 120.62992 * 210.98883 * 9 7 2 15 15 H 1.09002 * 109.58478 * 113.69967 * 14 9 7 16 16 C 1.52999 * 109.58627 * 353.41836 * 14 9 7 17 17 N 1.46496 * 109.47074 * 60.12502 * 16 14 9 18 18 C 1.34785 * 119.99859 * 180.02562 * 17 16 14 19 19 O 1.21587 * 119.99787 * 359.97438 * 18 17 16 20 20 C 1.47531 * 119.99901 * 180.02562 * 18 17 16 21 21 C 1.39527 * 120.24335 * 0.02562 * 20 18 17 22 22 C 1.38206 * 120.26421 * 179.97438 * 21 20 18 23 23 C 1.37968 * 120.70502 * 359.77502 * 22 21 20 24 24 C 1.39603 * 120.11126 * 0.44638 * 23 22 21 25 25 N 1.35994 * 133.38775 * 179.86666 * 24 23 22 26 26 C 1.30737 * 109.50616 * 179.71288 * 25 24 23 27 27 O 1.35283 * 125.05000 * 180.02562 * 26 25 24 28 28 N 1.36472 * 109.89431 * 0.02562 * 26 25 24 29 29 H 0.96994 * 126.32527 * 179.97438 * 28 26 25 30 30 C 1.37852 * 107.35261 * 359.97438 * 28 26 25 31 31 H 0.96997 * 119.99711 * 359.97438 * 1 2 3 32 32 H 1.09003 * 109.58611 * 246.15878 * 10 9 7 33 33 H 1.09001 * 109.58702 * 6.43890 * 10 9 7 34 34 H 1.09000 * 109.49879 * 174.58803 * 11 10 9 35 35 H 1.09004 * 109.49538 * 294.68002 * 11 10 9 36 36 H 1.08997 * 109.46185 * 58.66336 * 12 11 10 37 37 H 1.09011 * 109.45489 * 178.63231 * 12 11 10 38 38 H 1.08998 * 109.49739 * 301.41404 * 13 12 11 39 39 H 1.08998 * 109.49420 * 181.31867 * 13 12 11 40 40 H 1.09008 * 109.47009 * 300.12682 * 16 14 9 41 41 H 1.08995 * 109.47221 * 180.12469 * 16 14 9 42 42 H 0.97000 * 120.00242 * 359.97438 * 17 16 14 43 43 H 1.08003 * 119.86974 * 359.95353 * 21 20 18 44 44 H 1.08002 * 119.64947 * 179.97438 * 22 21 20 45 45 H 1.08003 * 119.94165 * 180.02562 * 23 22 21 46 46 H 0.96697 * 113.99927 * 269.98256 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6964 -1.2125 5 1 1.2853 2.7465 -0.0006 6 1 3.1040 1.6964 1.2125 7 6 2.0103 -1.2022 0.0005 8 1 3.0653 -1.2165 0.2309 9 7 1.3572 -2.3700 -0.2911 10 6 0.2153 -2.3783 -1.2156 11 6 0.4778 -3.4132 -2.3141 12 6 0.7758 -4.7695 -1.6709 13 6 2.0304 -4.6592 -0.8015 14 6 1.7855 -3.6384 0.3141 15 1 1.0072 -4.0051 0.9834 16 6 3.0785 -3.4199 1.1023 17 7 2.8451 -2.4331 2.1596 18 6 3.8499 -2.0799 2.9856 19 8 4.9500 -2.5807 2.8534 20 6 3.6147 -1.0866 4.0507 21 6 2.3539 -0.5099 4.2078 22 6 2.1329 0.4203 5.2058 23 6 3.1495 0.7893 6.0625 24 6 4.4209 0.2301 5.9227 25 7 5.5921 0.3927 6.5946 26 6 6.5077 -0.3783 6.0688 27 8 7.7887 -0.4650 6.4949 28 7 5.9790 -1.0827 5.0263 29 1 6.4481 -1.7231 4.4689 30 6 4.6551 -0.7158 4.9116 31 1 -0.4849 0.8400 0.0004 32 1 -0.6921 -2.6435 -0.6730 33 1 0.0989 -1.3905 -1.6614 34 1 -0.4023 -3.4982 -2.9516 35 1 1.3325 -3.0990 -2.9132 36 1 -0.0693 -5.0716 -1.0523 37 1 0.9390 -5.5133 -2.4510 38 1 2.8705 -4.3333 -1.4149 39 1 2.2554 -5.6311 -0.3625 40 1 3.8562 -3.0559 0.4308 41 1 3.3957 -4.3624 1.5486 42 1 1.9676 -2.0333 2.2647 43 1 1.5475 -0.7913 3.5468 44 1 1.1532 0.8607 5.3182 45 1 2.9630 1.5172 6.8384 46 1 8.3894 0.1586 6.0644 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001024483579.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:52:12 Heat of formation + Delta-G solvation = 19.489776 kcal Electronic energy + Delta-G solvation = -30886.544582 eV Core-core repulsion = 26777.739988 eV Total energy + Delta-G solvation = -4108.804594 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.164 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -42.18378 -39.44927 -38.14701 -37.63081 -36.36486 -34.29349 -33.14627 -33.09614 -31.15794 -30.04467 -29.79133 -28.84016 -26.14571 -24.97460 -23.45399 -22.37299 -22.21280 -21.98564 -20.76825 -20.08937 -19.19946 -18.86797 -17.75775 -17.52564 -16.61174 -16.25675 -15.75977 -15.62984 -15.38825 -14.71748 -14.35213 -14.13890 -14.06524 -14.02828 -13.67567 -13.53490 -13.41667 -12.91446 -12.61311 -12.47606 -12.10155 -11.98997 -11.88023 -11.63117 -11.54285 -11.26661 -10.99889 -10.82820 -10.67740 -10.61447 -10.36186 -10.26516 -10.20357 -10.05584 -9.67694 -9.52930 -9.35200 -8.68366 -8.44927 -8.31870 -8.05463 -6.73494 -5.91558 -3.38071 0.62198 1.49824 2.24436 2.59117 3.28205 3.31465 3.36082 3.40227 3.66935 3.73331 4.04455 4.37376 4.57330 4.97783 5.05595 5.16091 5.20167 5.25340 5.30064 5.42889 5.45272 5.58539 5.62963 5.76780 5.89510 5.96393 5.98879 6.08138 6.17348 6.26444 6.30954 6.34592 6.38947 6.49082 6.53622 6.64827 6.67601 6.68519 6.77435 6.80282 6.90232 7.04706 7.31902 7.55753 7.58726 7.68489 7.71606 8.11185 8.33112 8.68259 9.08972 9.70287 10.28640 11.14813 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.013444 B = 0.003728 C = 0.003247 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2082.261491 B = 7509.528928 C = 8621.084103 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.013 3.987 3 Si 0.888 3.112 4 H -0.285 1.285 5 H -0.289 1.289 6 H -0.279 1.279 7 C -0.255 4.255 8 H 0.068 0.932 9 N -0.588 5.588 10 C 0.173 3.827 11 C -0.144 4.144 12 C -0.107 4.107 13 C -0.127 4.127 14 C 0.160 3.840 15 H 0.033 0.967 16 C 0.134 3.866 17 N -0.681 5.681 18 C 0.554 3.446 19 O -0.576 6.576 20 C -0.121 4.121 21 C -0.050 4.050 22 C -0.131 4.131 23 C -0.043 4.043 24 C 0.041 3.959 25 N -0.485 5.485 26 C 0.442 3.558 27 O -0.443 6.443 28 N -0.583 5.583 29 H 0.433 0.567 30 C 0.111 3.889 31 H 0.256 0.744 32 H 0.019 0.981 33 H 0.084 0.916 34 H 0.046 0.954 35 H 0.053 0.947 36 H 0.053 0.947 37 H 0.044 0.956 38 H 0.060 0.940 39 H 0.051 0.949 40 H 0.067 0.933 41 H 0.057 0.943 42 H 0.416 0.584 43 H 0.146 0.854 44 H 0.139 0.861 45 H 0.134 0.866 46 H 0.409 0.591 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.828 -2.919 6.620 8.698 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.187 4.187 3 Si 0.717 3.283 4 H -0.211 1.211 5 H -0.215 1.215 6 H -0.205 1.205 7 C -0.385 4.385 8 H 0.086 0.914 9 N -0.313 5.313 10 C 0.048 3.952 11 C -0.184 4.184 12 C -0.145 4.145 13 C -0.167 4.167 14 C 0.053 3.947 15 H 0.050 0.950 16 C 0.010 3.990 17 N -0.331 5.331 18 C 0.341 3.659 19 O -0.459 6.459 20 C -0.127 4.127 21 C -0.070 4.070 22 C -0.151 4.151 23 C -0.062 4.062 24 C -0.077 4.077 25 N -0.217 5.217 26 C 0.138 3.862 27 O -0.245 6.245 28 N -0.207 5.207 29 H 0.275 0.725 30 C -0.002 4.002 31 H 0.066 0.934 32 H 0.037 0.963 33 H 0.103 0.897 34 H 0.065 0.935 35 H 0.071 0.929 36 H 0.072 0.928 37 H 0.063 0.937 38 H 0.079 0.921 39 H 0.070 0.930 40 H 0.086 0.914 41 H 0.075 0.925 42 H 0.256 0.744 43 H 0.163 0.837 44 H 0.157 0.843 45 H 0.152 0.848 46 H 0.267 0.733 Dipole moment (debyes) X Y Z Total from point charges 5.450 -3.000 7.624 9.840 hybrid contribution 0.578 0.647 -1.384 1.633 sum 6.028 -2.353 6.241 8.990 Atomic orbital electron populations 1.69992 1.05072 1.25736 1.53201 1.25027 0.95144 0.97970 1.00538 0.86591 0.79256 0.83883 0.78550 1.21134 1.21464 1.20456 1.19138 0.92028 0.84076 1.43241 0.91425 1.44070 1.36117 1.01927 1.49146 1.20762 0.88472 0.97536 0.88440 1.22195 0.99989 0.96559 0.99624 1.21362 0.97556 0.97393 0.98193 1.21934 0.98258 0.98212 0.98279 1.20735 0.93145 0.88619 0.92199 0.94954 1.21335 0.98530 0.90390 0.88734 1.45924 1.14185 1.42395 1.30597 1.18033 0.84669 0.81598 0.81588 1.90622 1.24309 1.57072 1.73887 1.18971 0.92738 1.02610 0.98365 1.21406 0.95103 0.94020 0.96473 1.20905 0.99508 0.98974 0.95734 1.20409 0.88885 0.98159 0.98791 1.18761 0.93758 0.99907 0.95311 1.70683 0.99350 1.22991 1.28676 1.20344 0.87061 0.91924 0.86904 1.84814 1.13076 1.62603 1.63992 1.43442 1.09835 1.38735 1.28683 0.72474 1.18338 0.84434 0.98593 0.98853 0.93434 0.96306 0.89732 0.93511 0.92857 0.92837 0.93708 0.92092 0.93030 0.91435 0.92478 0.74418 0.83671 0.84298 0.84793 0.73343 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -23.00 11.24 55.49 0.62 -22.38 16 2 C 0.01 0.32 4.96 -17.43 -0.09 0.23 16 3 Si 0.89 20.43 29.58 -169.99 -5.03 15.41 16 4 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 5 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 6 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 7 C -0.26 -6.06 6.96 -15.06 -0.10 -6.17 16 8 H 0.07 1.67 5.85 -52.49 -0.31 1.36 16 9 N -0.59 -12.77 2.97 -164.78 -0.49 -13.26 16 10 C 0.17 3.73 5.27 -3.71 -0.02 3.71 16 11 C -0.14 -2.57 6.08 -26.61 -0.16 -2.73 16 12 C -0.11 -1.68 5.88 -26.69 -0.16 -1.84 16 13 C -0.13 -2.04 5.37 -26.61 -0.14 -2.18 16 14 C 0.16 2.93 3.01 -67.60 -0.20 2.73 16 15 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 16 C 0.13 2.41 4.43 -4.04 -0.02 2.40 16 17 N -0.68 -12.51 3.79 -61.35 -0.23 -12.75 16 18 C 0.55 10.36 7.76 -12.47 -0.10 10.26 16 19 O -0.58 -11.57 15.27 5.29 0.08 -11.49 16 20 C -0.12 -2.07 5.88 -104.95 -0.62 -2.69 16 21 C -0.05 -0.77 9.53 -39.11 -0.37 -1.14 16 22 C -0.13 -1.74 9.99 -39.69 -0.40 -2.13 16 23 C -0.04 -0.58 10.09 -39.17 -0.40 -0.98 16 24 C 0.04 0.65 7.22 -84.69 -0.61 0.04 16 25 N -0.49 -7.69 11.32 -12.23 -0.14 -7.83 16 26 C 0.44 6.19 9.40 -88.86 -0.83 5.36 16 27 O -0.44 -4.59 13.63 -17.54 -0.24 -4.83 16 28 N -0.58 -8.69 6.03 -11.70 -0.07 -8.76 16 29 H 0.43 6.12 7.71 -40.82 -0.31 5.81 16 30 C 0.11 1.85 6.88 -83.66 -0.58 1.28 16 31 H 0.26 6.50 8.31 -40.82 -0.34 6.16 16 32 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 33 H 0.08 2.07 6.19 -51.93 -0.32 1.75 16 34 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 35 H 0.05 0.99 8.14 -51.93 -0.42 0.56 16 36 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 37 H 0.04 0.62 8.14 -51.92 -0.42 0.20 16 38 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 39 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 40 H 0.07 1.34 7.43 -51.92 -0.39 0.95 16 41 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 42 H 0.42 7.83 5.41 -40.82 -0.22 7.61 16 43 H 0.15 2.22 6.39 -52.48 -0.34 1.89 16 44 H 0.14 1.45 8.06 -52.49 -0.42 1.03 16 45 H 0.13 1.48 8.06 -52.48 -0.42 1.06 16 46 H 0.41 1.96 9.06 45.56 0.41 2.37 16 LS Contribution 369.60 15.07 5.57 5.57 Total: -1.00 -29.82 369.60 -9.98 -39.80 By element: Atomic # 1 Polarization: 19.65 SS G_CDS: -5.26 Total: 14.39 kcal Atomic # 6 Polarization: 10.93 SS G_CDS: -4.79 Total: 6.14 kcal Atomic # 7 Polarization: -64.67 SS G_CDS: -0.31 Total: -64.98 kcal Atomic # 8 Polarization: -16.17 SS G_CDS: -0.16 Total: -16.32 kcal Atomic # 14 Polarization: 20.43 SS G_CDS: -5.03 Total: 15.41 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -29.82 -9.98 -39.80 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001024483579.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.287 kcal (2) G-P(sol) polarization free energy of solvation -29.822 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.465 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.975 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.797 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.490 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds