Wall clock time and date at job start Wed Apr 1 2020 02:52:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86797 * 119.99993 * 2 1 4 4 H 1.48501 * 109.47204 * 239.99630 * 3 2 1 5 5 H 1.48497 * 109.47400 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47086 * 120.00013 * 3 2 1 7 7 C 1.38817 * 119.99877 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99902 * 194.25829 * 7 2 1 9 9 N 1.36939 * 120.00011 * 14.26201 * 7 2 1 10 10 C 1.46925 * 120.62940 * 31.01182 * 9 7 2 11 11 C 1.53191 * 108.77637 * 126.37180 * 10 9 7 12 12 C 1.53041 * 109.31092 * 54.63033 * 11 10 9 13 13 C 1.53042 * 109.53994 * 298.63576 * 12 11 10 14 14 C 1.46927 * 120.62992 * 210.98883 * 9 7 2 15 15 H 1.09002 * 109.58478 * 113.69967 * 14 9 7 16 16 C 1.52999 * 109.58627 * 353.41836 * 14 9 7 17 17 N 1.46496 * 109.47074 * 60.12502 * 16 14 9 18 18 C 1.34785 * 119.99859 * 180.02562 * 17 16 14 19 19 O 1.21587 * 119.99787 * 359.97438 * 18 17 16 20 20 C 1.47531 * 119.99901 * 180.02562 * 18 17 16 21 21 C 1.39527 * 120.24335 * 0.02562 * 20 18 17 22 22 C 1.38206 * 120.26421 * 179.97438 * 21 20 18 23 23 C 1.37968 * 120.70502 * 359.77502 * 22 21 20 24 24 C 1.39603 * 120.11126 * 0.44638 * 23 22 21 25 25 N 1.35994 * 133.38775 * 179.86666 * 24 23 22 26 26 C 1.30737 * 109.50616 * 179.71288 * 25 24 23 27 27 O 1.35283 * 125.05000 * 180.02562 * 26 25 24 28 28 N 1.36472 * 109.89431 * 0.02562 * 26 25 24 29 29 H 0.96994 * 126.32527 * 179.97438 * 28 26 25 30 30 C 1.37852 * 107.35261 * 359.97438 * 28 26 25 31 31 H 0.96997 * 119.99711 * 359.97438 * 1 2 3 32 32 H 1.09003 * 109.58611 * 246.15878 * 10 9 7 33 33 H 1.09001 * 109.58702 * 6.43890 * 10 9 7 34 34 H 1.09000 * 109.49879 * 174.58803 * 11 10 9 35 35 H 1.09004 * 109.49538 * 294.68002 * 11 10 9 36 36 H 1.08997 * 109.46185 * 58.66336 * 12 11 10 37 37 H 1.09011 * 109.45489 * 178.63231 * 12 11 10 38 38 H 1.08998 * 109.49739 * 301.41404 * 13 12 11 39 39 H 1.08998 * 109.49420 * 181.31867 * 13 12 11 40 40 H 1.09008 * 109.47009 * 300.12682 * 16 14 9 41 41 H 1.08995 * 109.47221 * 180.12469 * 16 14 9 42 42 H 0.97000 * 120.00242 * 359.97438 * 17 16 14 43 43 H 1.08003 * 119.86974 * 359.95353 * 21 20 18 44 44 H 1.08002 * 119.64947 * 179.97438 * 22 21 20 45 45 H 1.08003 * 119.94165 * 180.02562 * 23 22 21 46 46 H 0.96697 * 113.99927 * 269.98256 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6964 -1.2125 5 1 1.2853 2.7465 -0.0006 6 1 3.1040 1.6964 1.2125 7 6 2.0103 -1.2022 0.0005 8 1 3.0653 -1.2165 0.2309 9 7 1.3572 -2.3700 -0.2911 10 6 0.2153 -2.3783 -1.2156 11 6 0.4778 -3.4132 -2.3141 12 6 0.7758 -4.7695 -1.6709 13 6 2.0304 -4.6592 -0.8015 14 6 1.7855 -3.6384 0.3141 15 1 1.0072 -4.0051 0.9834 16 6 3.0785 -3.4199 1.1023 17 7 2.8451 -2.4331 2.1596 18 6 3.8499 -2.0799 2.9856 19 8 4.9500 -2.5807 2.8534 20 6 3.6147 -1.0866 4.0507 21 6 2.3539 -0.5099 4.2078 22 6 2.1329 0.4203 5.2058 23 6 3.1495 0.7893 6.0625 24 6 4.4209 0.2301 5.9227 25 7 5.5921 0.3927 6.5946 26 6 6.5077 -0.3783 6.0688 27 8 7.7887 -0.4650 6.4949 28 7 5.9790 -1.0827 5.0263 29 1 6.4481 -1.7231 4.4689 30 6 4.6551 -0.7158 4.9116 31 1 -0.4849 0.8400 0.0004 32 1 -0.6921 -2.6435 -0.6730 33 1 0.0989 -1.3905 -1.6614 34 1 -0.4023 -3.4982 -2.9516 35 1 1.3325 -3.0990 -2.9132 36 1 -0.0693 -5.0716 -1.0523 37 1 0.9390 -5.5133 -2.4510 38 1 2.8705 -4.3333 -1.4149 39 1 2.2554 -5.6311 -0.3625 40 1 3.8562 -3.0559 0.4308 41 1 3.3957 -4.3624 1.5486 42 1 1.9676 -2.0333 2.2647 43 1 1.5475 -0.7913 3.5468 44 1 1.1532 0.8607 5.3182 45 1 2.9630 1.5172 6.8384 46 1 8.3894 0.1586 6.0644 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001024483579.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:52:10 Heat of formation + Delta-G solvation = -2.439358 kcal Electronic energy + Delta-G solvation = -30887.495500 eV Core-core repulsion = 26777.739988 eV Total energy + Delta-G solvation = -4109.755512 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.164 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -43.31808 -40.86607 -39.42299 -38.89841 -37.43432 -35.75406 -34.87847 -34.27670 -32.58362 -31.70725 -31.06851 -29.98120 -27.70446 -26.58477 -24.70258 -23.79824 -23.52259 -23.13084 -22.23307 -21.45685 -20.68893 -19.93183 -19.07205 -18.65601 -18.12680 -17.52042 -17.35488 -16.98009 -16.66954 -16.15885 -15.82664 -15.59071 -15.39450 -15.28500 -14.96208 -14.92897 -14.77759 -14.51795 -14.04881 -13.69072 -13.49669 -13.45246 -13.10382 -12.86007 -12.81399 -12.69914 -12.64416 -12.55057 -12.31305 -12.02722 -11.86954 -11.78715 -11.52361 -11.47016 -11.16984 -11.07723 -10.81869 -10.49703 -9.95668 -9.49414 -9.25381 -8.53333 -7.80722 -5.26907 -0.53552 0.34010 1.16085 1.42600 1.46319 1.47925 1.51114 1.99083 2.29347 2.51007 2.67774 2.81400 3.34282 3.44983 3.59854 3.80660 3.89903 4.01742 4.08718 4.15356 4.23289 4.26885 4.33547 4.43998 4.55853 4.65308 4.67992 4.74543 4.86105 4.89282 5.01052 5.12298 5.15819 5.23282 5.28520 5.29537 5.35516 5.38373 5.47643 5.56531 5.65742 5.70002 5.77584 5.83193 5.86387 6.46679 6.54946 6.59688 6.64771 7.20772 7.23422 7.90754 8.44573 9.23310 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.013444 B = 0.003728 C = 0.003247 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2082.261491 B = 7509.528928 C = 8621.084103 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C -0.021 4.021 3 Si 0.927 3.073 4 H -0.295 1.295 5 H -0.291 1.291 6 H -0.281 1.281 7 C -0.239 4.239 8 H 0.057 0.943 9 N -0.600 5.600 10 C 0.178 3.822 11 C -0.136 4.136 12 C -0.103 4.103 13 C -0.122 4.122 14 C 0.160 3.840 15 H 0.035 0.965 16 C 0.139 3.861 17 N -0.683 5.683 18 C 0.551 3.449 19 O -0.596 6.596 20 C -0.144 4.144 21 C -0.053 4.053 22 C -0.126 4.126 23 C -0.035 4.035 24 C 0.025 3.975 25 N -0.506 5.506 26 C 0.455 3.545 27 O -0.439 6.439 28 N -0.585 5.585 29 H 0.434 0.566 30 C 0.090 3.910 31 H 0.250 0.750 32 H 0.004 0.996 33 H 0.050 0.950 34 H 0.063 0.937 35 H 0.043 0.957 36 H 0.058 0.942 37 H 0.072 0.928 38 H 0.052 0.948 39 H 0.081 0.919 40 H 0.047 0.953 41 H 0.075 0.925 42 H 0.414 0.586 43 H 0.141 0.859 44 H 0.171 0.829 45 H 0.163 0.837 46 H 0.434 0.566 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.057 -3.668 7.274 9.589 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.563 5.563 2 C -0.218 4.218 3 Si 0.758 3.242 4 H -0.223 1.223 5 H -0.217 1.217 6 H -0.207 1.207 7 C -0.369 4.369 8 H 0.075 0.925 9 N -0.325 5.325 10 C 0.053 3.947 11 C -0.175 4.175 12 C -0.140 4.140 13 C -0.162 4.162 14 C 0.054 3.946 15 H 0.053 0.947 16 C 0.015 3.985 17 N -0.332 5.332 18 C 0.339 3.661 19 O -0.480 6.480 20 C -0.150 4.150 21 C -0.073 4.073 22 C -0.146 4.146 23 C -0.054 4.054 24 C -0.092 4.092 25 N -0.239 5.239 26 C 0.150 3.850 27 O -0.244 6.244 28 N -0.209 5.209 29 H 0.276 0.724 30 C -0.023 4.023 31 H 0.059 0.941 32 H 0.022 0.978 33 H 0.068 0.932 34 H 0.082 0.918 35 H 0.062 0.938 36 H 0.077 0.923 37 H 0.091 0.909 38 H 0.071 0.929 39 H 0.100 0.900 40 H 0.065 0.935 41 H 0.093 0.907 42 H 0.252 0.748 43 H 0.159 0.841 44 H 0.189 0.811 45 H 0.181 0.819 46 H 0.297 0.703 Dipole moment (debyes) X Y Z Total from point charges 5.708 -3.755 8.269 10.726 hybrid contribution 0.598 0.859 -1.541 1.862 sum 6.305 -2.896 6.728 9.665 Atomic orbital electron populations 1.70077 1.05672 1.25472 1.55036 1.25338 0.95470 0.99384 1.01605 0.85973 0.78166 0.82337 0.77733 1.22262 1.21714 1.20664 1.19097 0.91508 0.84943 1.41368 0.92491 1.44236 1.35938 1.02599 1.49746 1.20584 0.87967 0.96990 0.89205 1.22059 1.00381 0.96705 0.98390 1.21345 0.97411 0.96444 0.98820 1.21891 0.98243 0.98679 0.97340 1.20887 0.93032 0.87645 0.93043 0.94691 1.21310 0.97784 0.90973 0.88435 1.45928 1.14016 1.42550 1.30692 1.18339 0.84295 0.81631 0.81805 1.90591 1.24921 1.57932 1.74577 1.18936 0.93864 1.03457 0.98786 1.21510 0.94351 0.94435 0.97041 1.21235 1.00866 0.97945 0.94518 1.20803 0.87886 0.97763 0.98977 1.19160 0.94715 1.00076 0.95273 1.70696 0.99666 1.24110 1.29401 1.20470 0.88005 0.90644 0.85868 1.84788 1.11905 1.63651 1.64103 1.43481 1.09492 1.38906 1.28996 0.72388 1.18511 0.85034 0.99410 0.99367 0.94055 0.97810 0.93166 0.91792 0.93777 0.92302 0.90897 0.92897 0.90019 0.93490 0.90678 0.74762 0.84121 0.81149 0.81904 0.70332 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -47.97 11.24 21.65 0.24 -47.73 16 2 C -0.02 -1.03 4.96 84.86 0.42 -0.61 16 3 Si 0.93 42.64 29.58 68.60 2.03 44.66 16 4 H -0.30 -13.95 7.11 99.48 0.71 -13.24 16 5 H -0.29 -13.41 7.11 99.48 0.71 -12.70 16 6 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 7 C -0.24 -11.49 6.96 84.03 0.59 -10.90 16 8 H 0.06 2.87 5.85 -2.91 -0.02 2.85 16 9 N -0.60 -26.11 2.97 -675.23 -2.01 -28.12 16 10 C 0.18 7.70 5.27 86.36 0.46 8.15 16 11 C -0.14 -4.66 6.08 30.67 0.19 -4.47 16 12 C -0.10 -2.92 5.88 30.62 0.18 -2.74 16 13 C -0.12 -3.61 5.37 30.67 0.16 -3.45 16 14 C 0.16 5.70 3.01 44.97 0.14 5.83 16 15 H 0.04 1.26 8.14 -2.39 -0.02 1.25 16 16 C 0.14 4.95 4.43 86.38 0.38 5.33 16 17 N -0.68 -25.32 3.79 -466.27 -1.77 -27.09 16 18 C 0.55 20.90 7.76 86.69 0.67 21.57 16 19 O -0.60 -24.26 15.27 -3.99 -0.06 -24.32 16 20 C -0.14 -4.98 5.88 -20.08 -0.12 -5.10 16 21 C -0.05 -1.62 9.53 22.57 0.22 -1.41 16 22 C -0.13 -3.11 9.99 22.20 0.22 -2.89 16 23 C -0.03 -0.88 10.09 22.54 0.23 -0.65 16 24 C 0.03 0.79 7.22 39.36 0.28 1.07 16 25 N -0.51 -15.46 11.32 -306.46 -3.47 -18.93 16 26 C 0.45 12.25 9.40 179.73 1.69 13.94 16 27 O -0.44 -8.31 13.63 -85.69 -1.17 -9.47 16 28 N -0.58 -17.28 6.03 -301.79 -1.82 -19.10 16 29 H 0.43 12.32 7.71 -92.71 -0.71 11.61 16 30 C 0.09 2.99 6.88 39.17 0.27 3.26 16 31 H 0.25 12.98 8.31 -92.71 -0.77 12.20 16 32 H 0.00 0.17 8.14 -2.39 -0.02 0.15 16 33 H 0.05 2.51 6.19 -2.39 -0.01 2.50 16 34 H 0.06 1.95 8.14 -2.39 -0.02 1.94 16 35 H 0.04 1.58 8.14 -2.39 -0.02 1.56 16 36 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 37 H 0.07 1.72 8.14 -2.38 -0.02 1.70 16 38 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 39 H 0.08 1.97 8.14 -2.39 -0.02 1.95 16 40 H 0.05 1.87 7.43 -2.38 -0.02 1.85 16 41 H 0.08 2.40 8.14 -2.39 -0.02 2.38 16 42 H 0.41 15.79 5.41 -92.71 -0.50 15.29 16 43 H 0.14 4.35 6.39 -2.91 -0.02 4.33 16 44 H 0.17 3.08 8.06 -2.91 -0.02 3.05 16 45 H 0.16 3.11 8.06 -2.91 -0.02 3.08 16 46 H 0.43 3.20 9.06 -74.06 -0.67 2.53 16 Total: -1.00 -64.89 369.60 -2.87 -67.76 By element: Atomic # 1 Polarization: 36.24 SS G_CDS: -0.83 Total: 35.41 kcal Atomic # 6 Polarization: 20.95 SS G_CDS: 5.97 Total: 26.92 kcal Atomic # 7 Polarization: -132.15 SS G_CDS: -8.82 Total: -140.96 kcal Atomic # 8 Polarization: -32.57 SS G_CDS: -1.23 Total: -33.80 kcal Atomic # 14 Polarization: 42.64 SS G_CDS: 2.03 Total: 44.66 kcal Total: -64.89 -2.87 -67.76 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001024483579.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.324 kcal (2) G-P(sol) polarization free energy of solvation -64.894 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.430 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.870 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.764 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.439 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds