Wall clock time and date at job start Wed Apr 1 2020 03:15:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86803 * 119.99800 * 2 1 4 4 H 1.48498 * 109.47124 * 270.00187 * 3 2 1 5 5 H 1.48501 * 109.47055 * 30.00127 * 3 2 1 6 6 H 1.48501 * 109.47141 * 149.99808 * 3 2 1 7 7 C 1.38815 * 120.00420 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99676 * 180.02562 * 7 2 1 9 9 N 1.36937 * 119.99704 * 359.97438 * 7 2 1 10 10 C 1.47872 * 126.94466 * 0.02593 * 9 7 2 11 11 C 1.56015 * 105.10303 * 182.00181 * 10 9 7 12 12 H 1.08997 * 116.25204 * 159.68274 * 11 10 9 13 13 C 1.57084 * 99.60642 * 32.80058 * 11 10 9 14 14 C 1.49290 * 126.94134 * 180.02562 * 9 7 2 15 15 H 1.08994 * 116.15435 * 16.70494 * 14 9 7 16 16 C 1.56021 * 104.09149 * 247.55849 * 14 9 7 17 17 N 1.47869 * 105.10519 * 288.76823 * 16 14 9 18 18 C 1.34780 * 126.94415 * 182.02058 * 17 16 14 19 19 O 1.21550 * 119.99971 * 174.14064 * 18 17 16 20 20 C 1.47840 * 119.99812 * 354.14404 * 18 17 16 21 21 C 1.39574 * 120.14455 * 185.56621 * 20 18 17 22 22 C 1.37958 * 119.85386 * 179.79146 * 21 20 18 23 23 C 1.38358 * 120.14507 * 0.49044 * 22 21 20 24 24 C 1.50703 * 119.85356 * 179.76486 * 23 22 21 25 25 N 1.46499 * 109.47100 * 269.98105 * 24 23 22 26 26 C 1.34777 * 119.99817 * 180.02562 * 25 24 23 27 27 N 1.34778 * 119.99896 * 179.97438 * 26 25 24 28 28 O 1.21586 * 119.99893 * 359.97438 * 26 25 24 29 29 C 1.38355 * 120.29058 * 359.74327 * 23 22 21 30 30 C 1.37955 * 120.14895 * 0.02562 * 29 23 22 31 31 H 0.97004 * 120.00211 * 359.97438 * 1 2 3 32 32 H 1.09001 * 110.31584 * 300.90723 * 10 9 7 33 33 H 1.08998 * 110.31533 * 63.09189 * 10 9 7 34 34 H 1.09001 * 112.36899 * 191.71060 * 13 11 10 35 35 H 1.09000 * 112.36705 * 64.27985 * 13 11 10 36 36 H 1.08994 * 110.31344 * 47.67609 * 16 14 9 37 37 H 1.08996 * 110.31258 * 169.75904 * 16 14 9 38 38 H 1.08001 * 120.07300 * 0.02562 * 21 20 18 39 39 H 1.08009 * 119.92476 * 180.23547 * 22 21 20 40 40 H 1.09000 * 109.46862 * 29.98186 * 24 23 22 41 41 H 1.09002 * 109.47020 * 149.97426 * 24 23 22 42 42 H 0.96996 * 119.99861 * 359.97438 * 25 24 23 43 43 H 0.96996 * 119.99782 * 359.97438 * 27 26 25 44 44 H 0.96998 * 120.00345 * 180.02562 * 27 26 25 45 45 H 1.08005 * 119.92492 * 180.02562 * 29 23 22 46 46 H 1.07996 * 120.07521 * 179.97438 * 30 29 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4975 2.0465 -1.4001 5 1 1.4475 2.6527 0.7001 6 1 3.5477 1.4403 0.7001 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2020 0.0010 9 7 1.3257 -2.3880 0.0016 10 6 -0.1422 -2.5669 0.0018 11 6 -0.3637 -4.1103 0.0558 12 1 -1.3410 -4.4452 0.4032 13 6 0.8842 -4.5243 0.9153 14 6 1.9104 -3.7617 0.0028 15 1 2.9608 -3.8364 0.2841 16 6 1.5277 -4.3387 -1.3953 17 7 0.0699 -4.5770 -1.3279 18 6 -0.7095 -5.1083 -2.2907 19 8 -1.8793 -5.3469 -2.0628 20 6 -0.1413 -5.4010 -3.6238 21 6 -0.9695 -5.8417 -4.6572 22 6 -0.4337 -6.1090 -5.9001 23 6 0.9230 -5.9508 -6.1205 24 6 1.5022 -6.2497 -7.4793 25 7 1.9048 -7.6570 -7.5397 26 6 2.4528 -8.1533 -8.6666 27 7 2.8236 -9.4479 -8.7220 28 8 2.6126 -7.4332 -9.6331 29 6 1.7502 -5.5189 -5.0990 30 6 1.2265 -5.2437 -3.8528 31 1 -0.4850 0.8401 0.0004 32 1 -0.5814 -2.0906 0.8784 33 1 -0.5738 -2.1543 -0.9101 34 1 1.0494 -5.6017 0.9147 35 1 0.8454 -4.1173 1.9258 36 1 1.7572 -3.6163 -2.1785 37 1 2.0576 -5.2737 -1.5767 38 1 -2.0281 -5.9696 -4.4854 39 1 -1.0741 -6.4464 -6.7017 40 1 0.7519 -6.0532 -8.2452 41 1 2.3717 -5.6152 -7.6512 42 1 1.7776 -8.2313 -6.7685 43 1 2.6965 -10.0222 -7.9508 44 1 3.2184 -9.8051 -9.5328 45 1 2.8084 -5.3971 -5.2777 46 1 1.8734 -4.9070 -3.0562 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001032775364.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:15:17 Heat of formation + Delta-G solvation = 42.141053 kcal Electronic energy + Delta-G solvation = -29684.936181 eV Core-core repulsion = 25577.113820 eV Total energy + Delta-G solvation = -4107.822361 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.164 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.55274 -40.08163 -39.02700 -37.61595 -35.11690 -33.99580 -33.74383 -32.14662 -31.16341 -30.81194 -29.08861 -28.65497 -26.63467 -25.40389 -23.96985 -22.83762 -22.10140 -21.41450 -20.63597 -19.88320 -19.04087 -18.66082 -17.72669 -17.53985 -16.53051 -16.22630 -15.73874 -15.40094 -15.28311 -15.13285 -14.76310 -14.72379 -14.34751 -14.12457 -13.78878 -13.63028 -13.34205 -13.20024 -12.86756 -12.46482 -12.38199 -12.02517 -11.78017 -11.56332 -11.36120 -11.17598 -11.07125 -10.91209 -10.67659 -10.66075 -10.59454 -10.20771 -10.11293 -10.05711 -9.70949 -9.58359 -9.35683 -9.06326 -8.97982 -8.75514 -8.11288 -6.99153 -5.82534 -3.17520 0.71709 1.29273 2.57919 2.90616 3.09621 3.21296 3.34186 3.38835 3.41636 3.90142 4.20841 4.36503 4.36731 4.65085 4.70074 4.86184 5.00540 5.05878 5.11159 5.25190 5.31360 5.40275 5.46117 5.51140 5.57236 5.67663 5.72212 5.75093 5.89896 6.00270 6.07859 6.14297 6.18269 6.28829 6.30585 6.36039 6.36186 6.43055 6.49639 6.55928 6.56555 6.78348 7.35254 7.41065 7.60971 7.65813 7.97951 8.03919 8.29409 8.47956 9.03994 9.65167 10.33127 11.29585 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.013762 B = 0.002517 C = 0.002319 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2034.084594 B =11120.514270 C =12072.473888 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C -0.005 4.005 3 Si 0.913 3.087 4 H -0.288 1.288 5 H -0.290 1.290 6 H -0.280 1.280 7 C -0.234 4.234 8 H 0.081 0.919 9 N -0.597 5.597 10 C 0.173 3.827 11 C 0.101 3.899 12 H 0.117 0.883 13 C -0.150 4.150 14 C 0.139 3.861 15 H 0.107 0.893 16 C 0.075 3.925 17 N -0.603 5.603 18 C 0.568 3.432 19 O -0.554 6.554 20 C -0.111 4.111 21 C -0.066 4.066 22 C -0.111 4.111 23 C -0.097 4.097 24 C 0.179 3.821 25 N -0.740 5.740 26 C 0.705 3.295 27 N -0.869 5.869 28 O -0.596 6.596 29 C -0.108 4.108 30 C -0.119 4.119 31 H 0.255 0.745 32 H 0.058 0.942 33 H 0.048 0.952 34 H 0.066 0.934 35 H 0.087 0.913 36 H 0.082 0.918 37 H 0.062 0.938 38 H 0.136 0.864 39 H 0.128 0.872 40 H 0.077 0.923 41 H 0.078 0.922 42 H 0.399 0.601 43 H 0.397 0.603 44 H 0.414 0.586 45 H 0.128 0.872 46 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.598 -18.831 -9.230 21.470 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.202 4.202 3 Si 0.743 3.257 4 H -0.216 1.216 5 H -0.217 1.217 6 H -0.206 1.206 7 C -0.362 4.362 8 H 0.099 0.901 9 N -0.321 5.321 10 C 0.048 3.952 11 C 0.000 4.000 12 H 0.135 0.865 13 C -0.189 4.189 14 C 0.030 3.970 15 H 0.125 0.875 16 C -0.051 4.051 17 N -0.336 5.336 18 C 0.357 3.643 19 O -0.434 6.434 20 C -0.114 4.114 21 C -0.085 4.085 22 C -0.130 4.130 23 C -0.098 4.098 24 C 0.055 3.945 25 N -0.396 5.396 26 C 0.403 3.597 27 N -0.437 5.437 28 O -0.474 6.474 29 C -0.126 4.126 30 C -0.137 4.137 31 H 0.065 0.935 32 H 0.076 0.924 33 H 0.067 0.933 34 H 0.085 0.915 35 H 0.105 0.895 36 H 0.100 0.900 37 H 0.080 0.920 38 H 0.154 0.846 39 H 0.146 0.854 40 H 0.095 0.905 41 H 0.096 0.904 42 H 0.233 0.767 43 H 0.225 0.775 44 H 0.246 0.754 45 H 0.146 0.854 46 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges 3.937 -17.896 -9.911 20.832 hybrid contribution 0.413 0.287 0.227 0.552 sum 4.350 -17.609 -9.683 20.562 Atomic orbital electron populations 1.69905 1.04975 1.25435 1.56160 1.24829 0.95688 0.97781 1.01858 0.86117 0.78571 0.83398 0.77610 1.21557 1.21657 1.20605 1.19034 0.90403 0.81993 1.44761 0.90082 1.45244 1.01296 0.99268 1.86285 1.21935 0.84785 0.86956 1.01491 1.24963 0.97816 0.97729 0.79445 0.86470 1.24114 0.96563 0.99027 0.99230 1.23239 0.96729 0.86450 0.90609 0.87506 1.23652 0.80491 0.98699 1.02210 1.49821 1.09105 1.59621 1.15078 1.17876 0.85417 0.77559 0.83430 1.90727 1.16477 1.54564 1.81626 1.20116 0.94312 1.02484 0.94460 1.21273 1.00427 0.95264 0.91544 1.21007 0.94438 1.00539 0.97014 1.20001 0.94037 1.00766 0.94988 1.20076 0.99908 0.80867 0.93602 1.45166 1.67067 1.12311 1.15097 1.15975 0.78146 0.82320 0.83295 1.42989 1.70107 1.10196 1.20377 1.90986 1.61693 1.58551 1.36135 1.21078 0.99856 0.99229 0.92466 1.22813 0.95387 0.96615 0.98845 0.93502 0.92399 0.93341 0.91520 0.89453 0.90039 0.92044 0.84644 0.85428 0.90506 0.90408 0.76746 0.77542 0.75376 0.85387 0.81918 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.22 10.56 55.49 0.59 -25.64 16 2 C 0.00 -0.12 5.49 -17.43 -0.10 -0.22 16 3 Si 0.91 21.29 29.55 -169.99 -5.02 16.27 16 4 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 5 H -0.29 -6.92 7.11 56.52 0.40 -6.51 16 6 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 7 C -0.23 -6.01 10.38 -15.06 -0.16 -6.16 16 8 H 0.08 1.97 7.83 -52.49 -0.41 1.56 16 9 N -0.60 -13.70 3.01 -156.35 -0.47 -14.17 16 10 C 0.17 4.01 4.75 -1.68 -0.01 4.00 16 11 C 0.10 1.88 5.40 -60.78 -0.33 1.55 16 12 H 0.12 2.11 8.12 -51.93 -0.42 1.69 16 13 C -0.15 -2.37 6.83 -22.31 -0.15 -2.53 16 14 C 0.14 2.39 5.46 -62.55 -0.34 2.05 16 15 H 0.11 1.62 8.14 -51.93 -0.42 1.20 16 16 C 0.07 1.17 4.26 -1.67 -0.01 1.16 16 17 N -0.60 -10.77 3.02 -156.37 -0.47 -11.24 16 18 C 0.57 10.42 7.88 -12.33 -0.10 10.33 16 19 O -0.55 -11.68 16.79 5.32 0.09 -11.59 16 20 C -0.11 -1.66 5.87 -104.97 -0.62 -2.28 16 21 C -0.07 -0.87 9.59 -39.19 -0.38 -1.25 16 22 C -0.11 -1.16 9.68 -39.64 -0.38 -1.55 16 23 C -0.10 -0.95 5.25 -104.53 -0.55 -1.50 16 24 C 0.18 1.63 5.79 -5.19 -0.03 1.60 16 25 N -0.74 -5.75 5.55 -66.41 -0.37 -6.12 16 26 C 0.70 6.74 8.84 -86.92 -0.77 5.98 16 27 N -0.87 -4.50 8.88 27.63 0.25 -4.26 16 28 O -0.60 -8.57 17.18 5.29 0.09 -8.48 16 29 C -0.11 -1.13 9.68 -39.64 -0.38 -1.52 16 30 C -0.12 -1.52 8.78 -39.18 -0.34 -1.86 16 31 H 0.25 7.14 8.31 -40.82 -0.34 6.80 16 32 H 0.06 1.48 7.46 -51.93 -0.39 1.09 16 33 H 0.05 1.31 7.68 -51.93 -0.40 0.91 16 34 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 35 H 0.09 1.41 8.14 -51.93 -0.42 0.99 16 36 H 0.08 1.40 6.87 -51.93 -0.36 1.05 16 37 H 0.06 0.76 6.88 -51.93 -0.36 0.41 16 38 H 0.14 1.80 7.66 -52.49 -0.40 1.40 16 39 H 0.13 1.07 8.06 -52.48 -0.42 0.65 16 40 H 0.08 0.73 8.08 -51.93 -0.42 0.31 16 41 H 0.08 0.75 8.08 -51.93 -0.42 0.33 16 42 H 0.40 2.23 8.48 -40.82 -0.35 1.88 16 43 H 0.40 0.88 8.84 -40.82 -0.36 0.52 16 44 H 0.41 1.79 8.93 -40.82 -0.36 1.43 16 45 H 0.13 1.11 8.06 -52.48 -0.42 0.68 16 46 H 0.16 2.03 2.81 -53.65 -0.15 1.88 16 LS Contribution 376.38 15.07 5.67 5.67 Total: -1.00 -34.95 376.38 -10.33 -45.28 By element: Atomic # 1 Polarization: 12.49 SS G_CDS: -6.04 Total: 6.45 kcal Atomic # 6 Polarization: 12.45 SS G_CDS: -4.64 Total: 7.81 kcal Atomic # 7 Polarization: -60.94 SS G_CDS: -0.48 Total: -61.42 kcal Atomic # 8 Polarization: -20.25 SS G_CDS: 0.18 Total: -20.07 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.02 Total: 16.27 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -34.95 -10.33 -45.28 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032775364.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.425 kcal (2) G-P(sol) polarization free energy of solvation -34.949 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.476 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.335 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.284 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.141 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds