Wall clock time and date at job start Wed Apr 1 2020 03:15:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86803 * 119.99800 * 2 1 4 4 H 1.48498 * 109.47124 * 270.00187 * 3 2 1 5 5 H 1.48501 * 109.47055 * 30.00127 * 3 2 1 6 6 H 1.48501 * 109.47141 * 149.99808 * 3 2 1 7 7 C 1.38815 * 120.00420 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99676 * 180.02562 * 7 2 1 9 9 N 1.36937 * 119.99704 * 359.97438 * 7 2 1 10 10 C 1.47872 * 126.94466 * 0.02593 * 9 7 2 11 11 C 1.56015 * 105.10303 * 182.00181 * 10 9 7 12 12 H 1.08997 * 116.25204 * 159.68274 * 11 10 9 13 13 C 1.57084 * 99.60642 * 32.80058 * 11 10 9 14 14 C 1.49290 * 126.94134 * 180.02562 * 9 7 2 15 15 H 1.08994 * 116.15435 * 16.70494 * 14 9 7 16 16 C 1.56021 * 104.09149 * 247.55849 * 14 9 7 17 17 N 1.47869 * 105.10519 * 288.76823 * 16 14 9 18 18 C 1.34780 * 126.94415 * 182.02058 * 17 16 14 19 19 O 1.21550 * 119.99971 * 174.14064 * 18 17 16 20 20 C 1.47840 * 119.99812 * 354.14404 * 18 17 16 21 21 C 1.39574 * 120.14455 * 185.56621 * 20 18 17 22 22 C 1.37958 * 119.85386 * 179.79146 * 21 20 18 23 23 C 1.38358 * 120.14507 * 0.49044 * 22 21 20 24 24 C 1.50703 * 119.85356 * 179.76486 * 23 22 21 25 25 N 1.46499 * 109.47100 * 269.98105 * 24 23 22 26 26 C 1.34777 * 119.99817 * 180.02562 * 25 24 23 27 27 N 1.34778 * 119.99896 * 179.97438 * 26 25 24 28 28 O 1.21586 * 119.99893 * 359.97438 * 26 25 24 29 29 C 1.38355 * 120.29058 * 359.74327 * 23 22 21 30 30 C 1.37955 * 120.14895 * 0.02562 * 29 23 22 31 31 H 0.97004 * 120.00211 * 359.97438 * 1 2 3 32 32 H 1.09001 * 110.31584 * 300.90723 * 10 9 7 33 33 H 1.08998 * 110.31533 * 63.09189 * 10 9 7 34 34 H 1.09001 * 112.36899 * 191.71060 * 13 11 10 35 35 H 1.09000 * 112.36705 * 64.27985 * 13 11 10 36 36 H 1.08994 * 110.31344 * 47.67609 * 16 14 9 37 37 H 1.08996 * 110.31258 * 169.75904 * 16 14 9 38 38 H 1.08001 * 120.07300 * 0.02562 * 21 20 18 39 39 H 1.08009 * 119.92476 * 180.23547 * 22 21 20 40 40 H 1.09000 * 109.46862 * 29.98186 * 24 23 22 41 41 H 1.09002 * 109.47020 * 149.97426 * 24 23 22 42 42 H 0.96996 * 119.99861 * 359.97438 * 25 24 23 43 43 H 0.96996 * 119.99782 * 359.97438 * 27 26 25 44 44 H 0.96998 * 120.00345 * 180.02562 * 27 26 25 45 45 H 1.08005 * 119.92492 * 180.02562 * 29 23 22 46 46 H 1.07996 * 120.07521 * 179.97438 * 30 29 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4975 2.0465 -1.4001 5 1 1.4475 2.6527 0.7001 6 1 3.5477 1.4403 0.7001 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2020 0.0010 9 7 1.3257 -2.3880 0.0016 10 6 -0.1422 -2.5669 0.0018 11 6 -0.3637 -4.1103 0.0558 12 1 -1.3410 -4.4452 0.4032 13 6 0.8842 -4.5243 0.9153 14 6 1.9104 -3.7617 0.0028 15 1 2.9608 -3.8364 0.2841 16 6 1.5277 -4.3387 -1.3953 17 7 0.0699 -4.5770 -1.3279 18 6 -0.7095 -5.1083 -2.2907 19 8 -1.8793 -5.3469 -2.0628 20 6 -0.1413 -5.4010 -3.6238 21 6 -0.9695 -5.8417 -4.6572 22 6 -0.4337 -6.1090 -5.9001 23 6 0.9230 -5.9508 -6.1205 24 6 1.5022 -6.2497 -7.4793 25 7 1.9048 -7.6570 -7.5397 26 6 2.4528 -8.1533 -8.6666 27 7 2.8236 -9.4479 -8.7220 28 8 2.6126 -7.4332 -9.6331 29 6 1.7502 -5.5189 -5.0990 30 6 1.2265 -5.2437 -3.8528 31 1 -0.4850 0.8401 0.0004 32 1 -0.5814 -2.0906 0.8784 33 1 -0.5738 -2.1543 -0.9101 34 1 1.0494 -5.6017 0.9147 35 1 0.8454 -4.1173 1.9258 36 1 1.7572 -3.6163 -2.1785 37 1 2.0576 -5.2737 -1.5767 38 1 -2.0281 -5.9696 -4.4854 39 1 -1.0741 -6.4464 -6.7017 40 1 0.7519 -6.0532 -8.2452 41 1 2.3717 -5.6152 -7.6512 42 1 1.7776 -8.2313 -6.7685 43 1 2.6965 -10.0222 -7.9508 44 1 3.2184 -9.8051 -9.5328 45 1 2.8084 -5.3971 -5.2777 46 1 1.8734 -4.9070 -3.0562 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001032775364.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:15:16 Heat of formation + Delta-G solvation = 15.647340 kcal Electronic energy + Delta-G solvation = -29686.085035 eV Core-core repulsion = 25577.113820 eV Total energy + Delta-G solvation = -4108.971214 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.164 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.81357 -40.93106 -40.14648 -38.97897 -35.99551 -35.46918 -34.61068 -33.62018 -32.12296 -32.02323 -30.55905 -30.27885 -27.56737 -27.04981 -25.53422 -23.82922 -23.25424 -22.15329 -21.89346 -21.34848 -20.51571 -19.32395 -19.05656 -18.34284 -18.06782 -17.58452 -16.86553 -16.56455 -16.35689 -16.20032 -15.83340 -15.77816 -15.75165 -15.26890 -15.02066 -14.82572 -14.70305 -14.37691 -13.79631 -13.65628 -13.54739 -13.47122 -13.39154 -13.11993 -12.85910 -12.70974 -12.54478 -12.32000 -12.13136 -12.11114 -11.96544 -11.58776 -11.53192 -11.49804 -11.05657 -10.71129 -10.67936 -10.02714 -9.98961 -9.94690 -9.55764 -8.89781 -7.84290 -5.19678 -0.28502 0.38150 1.47857 1.48680 1.57287 1.66398 1.85668 2.15218 2.19129 2.48895 2.85817 3.32377 3.34540 3.48110 3.64425 3.72164 3.72730 3.79605 3.88999 4.00199 4.02891 4.19840 4.26397 4.38294 4.48276 4.60635 4.62629 4.67004 4.73311 4.87822 4.89357 5.01185 5.04386 5.13140 5.20473 5.25581 5.35352 5.41220 5.45268 5.48358 5.52793 5.66117 5.85668 5.90855 6.06860 6.09908 6.60112 7.03057 7.07791 7.09769 7.67047 7.71622 8.41497 9.27061 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.013762 B = 0.002517 C = 0.002319 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2034.084594 B =11120.514270 C =12072.473888 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.958 5.958 2 C -0.073 4.073 3 Si 0.975 3.025 4 H -0.292 1.292 5 H -0.304 1.304 6 H -0.261 1.261 7 C -0.226 4.226 8 H 0.099 0.901 9 N -0.616 5.616 10 C 0.187 3.813 11 C 0.102 3.898 12 H 0.117 0.883 13 C -0.127 4.127 14 C 0.134 3.866 15 H 0.140 0.860 16 C 0.082 3.918 17 N -0.607 5.607 18 C 0.559 3.441 19 O -0.594 6.594 20 C -0.137 4.137 21 C -0.077 4.077 22 C -0.102 4.102 23 C -0.079 4.079 24 C 0.183 3.817 25 N -0.728 5.728 26 C 0.700 3.300 27 N -0.848 5.848 28 O -0.647 6.647 29 C -0.101 4.101 30 C -0.119 4.119 31 H 0.243 0.757 32 H 0.020 0.980 33 H -0.005 1.005 34 H 0.104 0.896 35 H 0.085 0.915 36 H 0.066 0.934 37 H 0.111 0.889 38 H 0.125 0.875 39 H 0.151 0.849 40 H 0.074 0.926 41 H 0.076 0.924 42 H 0.412 0.588 43 H 0.414 0.586 44 H 0.420 0.580 45 H 0.154 0.846 46 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.710 -21.511 -10.090 24.979 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.607 5.607 2 C -0.265 4.265 3 Si 0.804 3.196 4 H -0.219 1.219 5 H -0.231 1.231 6 H -0.185 1.185 7 C -0.355 4.355 8 H 0.116 0.884 9 N -0.340 5.340 10 C 0.061 3.939 11 C 0.000 4.000 12 H 0.134 0.866 13 C -0.166 4.166 14 C 0.028 3.972 15 H 0.158 0.842 16 C -0.042 4.042 17 N -0.339 5.339 18 C 0.351 3.649 19 O -0.478 6.478 20 C -0.140 4.140 21 C -0.096 4.096 22 C -0.121 4.121 23 C -0.080 4.080 24 C 0.059 3.941 25 N -0.386 5.386 26 C 0.398 3.602 27 N -0.417 5.417 28 O -0.530 6.530 29 C -0.119 4.119 30 C -0.137 4.137 31 H 0.052 0.948 32 H 0.038 0.962 33 H 0.013 0.987 34 H 0.123 0.877 35 H 0.103 0.897 36 H 0.084 0.916 37 H 0.128 0.872 38 H 0.143 0.857 39 H 0.169 0.831 40 H 0.093 0.907 41 H 0.094 0.906 42 H 0.248 0.752 43 H 0.245 0.755 44 H 0.253 0.747 45 H 0.172 0.828 46 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges 7.117 -20.675 -10.732 24.357 hybrid contribution -0.532 1.019 0.422 1.225 sum 6.585 -19.655 -10.309 23.151 Atomic orbital electron populations 1.70153 1.06631 1.25082 1.58876 1.25654 0.96356 1.01194 1.03292 0.85118 0.77905 0.79410 0.77151 1.21904 1.23093 1.18486 1.19544 0.91330 0.82972 1.41672 0.88354 1.45494 1.01327 1.01148 1.86060 1.21500 0.85200 0.89972 0.97212 1.24804 0.99552 0.94276 0.81353 0.86555 1.24025 0.93477 1.01008 0.98100 1.23695 0.98531 0.83192 0.91813 0.84242 1.23639 0.79468 1.00547 1.00526 1.49882 1.10139 1.59288 1.14626 1.18514 0.85015 0.76841 0.84541 1.90687 1.18196 1.56449 1.82441 1.19984 0.95706 1.05285 0.93054 1.21295 0.99984 0.95958 0.92376 1.21197 0.95096 0.99439 0.96325 1.20079 0.93616 0.99161 0.95109 1.19967 0.99757 0.81640 0.92711 1.44951 1.66483 1.11940 1.15186 1.16178 0.78081 0.83108 0.82858 1.42799 1.68680 1.08875 1.21355 1.90957 1.63857 1.60163 1.37993 1.21327 1.01187 0.97963 0.91421 1.22797 0.94203 0.96682 0.99986 0.94804 0.96180 0.98654 0.87727 0.89682 0.91575 0.87166 0.85731 0.83122 0.90744 0.90570 0.75174 0.75515 0.74675 0.82801 0.81599 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -57.84 10.56 21.65 0.23 -57.61 16 2 C -0.07 -4.00 5.49 84.86 0.47 -3.53 16 3 Si 0.97 44.59 29.55 68.60 2.03 46.62 16 4 H -0.29 -13.33 7.11 99.48 0.71 -12.62 16 5 H -0.30 -14.41 7.11 99.48 0.71 -13.70 16 6 H -0.26 -10.92 7.11 99.48 0.71 -10.21 16 7 C -0.23 -11.58 10.38 84.03 0.87 -10.71 16 8 H 0.10 4.59 7.83 -2.91 -0.02 4.57 16 9 N -0.62 -28.32 3.01 -648.56 -1.95 -30.27 16 10 C 0.19 9.13 4.75 87.16 0.41 9.55 16 11 C 0.10 3.84 5.40 46.31 0.25 4.09 16 12 H 0.12 4.36 8.12 -2.39 -0.02 4.34 16 13 C -0.13 -3.72 6.83 33.46 0.23 -3.49 16 14 C 0.13 4.26 5.46 46.93 0.26 4.51 16 15 H 0.14 3.57 8.14 -2.39 -0.02 3.55 16 16 C 0.08 2.37 4.26 87.16 0.37 2.74 16 17 N -0.61 -21.46 3.02 -766.90 -2.32 -23.78 16 18 C 0.56 20.81 7.88 86.78 0.68 21.49 16 19 O -0.59 -26.09 16.79 -3.87 -0.07 -26.15 16 20 C -0.14 -4.02 5.87 -20.09 -0.12 -4.14 16 21 C -0.08 -1.98 9.59 22.53 0.22 -1.77 16 22 C -0.10 -1.91 9.68 22.23 0.22 -1.69 16 23 C -0.08 -1.31 5.25 -19.81 -0.10 -1.41 16 24 C 0.18 2.80 5.79 85.63 0.50 3.30 16 25 N -0.73 -9.04 5.55 -482.29 -2.68 -11.72 16 26 C 0.70 11.70 8.84 179.05 1.58 13.28 16 27 N -0.85 -6.39 8.88 -184.74 -1.64 -8.03 16 28 O -0.65 -17.74 17.18 -3.99 -0.07 -17.81 16 29 C -0.10 -1.77 9.68 22.23 0.22 -1.56 16 30 C -0.12 -2.75 8.78 22.53 0.20 -2.55 16 31 H 0.24 14.53 8.31 -92.71 -0.77 13.76 16 32 H 0.02 1.11 7.46 -2.39 -0.02 1.09 16 33 H 0.00 -0.28 7.68 -2.39 -0.02 -0.30 16 34 H 0.10 2.37 8.14 -2.39 -0.02 2.35 16 35 H 0.08 2.58 8.14 -2.39 -0.02 2.56 16 36 H 0.07 2.17 6.87 -2.39 -0.02 2.15 16 37 H 0.11 2.21 6.88 -2.39 -0.02 2.20 16 38 H 0.12 3.41 7.66 -2.91 -0.02 3.39 16 39 H 0.15 2.10 8.06 -2.91 -0.02 2.08 16 40 H 0.07 1.23 8.08 -2.39 -0.02 1.21 16 41 H 0.08 1.26 8.08 -2.39 -0.02 1.24 16 42 H 0.41 3.03 8.48 -92.71 -0.79 2.25 16 43 H 0.41 0.39 8.84 -92.71 -0.82 -0.43 16 44 H 0.42 2.59 8.93 -92.71 -0.83 1.77 16 45 H 0.15 1.96 8.06 -2.91 -0.02 1.93 16 46 H 0.17 3.62 2.81 -4.00 -0.01 3.61 16 Total: -1.00 -82.24 376.38 -1.60 -83.84 By element: Atomic # 1 Polarization: 18.16 SS G_CDS: -1.37 Total: 16.79 kcal Atomic # 6 Polarization: 21.87 SS G_CDS: 6.24 Total: 28.12 kcal Atomic # 7 Polarization: -123.05 SS G_CDS: -8.36 Total: -131.41 kcal Atomic # 8 Polarization: -43.82 SS G_CDS: -0.13 Total: -43.96 kcal Atomic # 14 Polarization: 44.59 SS G_CDS: 2.03 Total: 46.62 kcal Total: -82.24 -1.60 -83.84 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032775364.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.483 kcal (2) G-P(sol) polarization free energy of solvation -82.241 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.242 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.595 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.836 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.647 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds