Wall clock time and date at job start Wed Apr 1 2020 02:37:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86795 * 120.00127 * 2 1 4 4 H 1.48507 * 109.47242 * 270.00725 * 3 2 1 5 5 H 1.48503 * 109.47238 * 30.00138 * 3 2 1 6 6 H 1.48498 * 109.47308 * 150.00496 * 3 2 1 7 7 C 1.38811 * 119.99809 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99682 * 180.02562 * 7 2 1 9 9 N 1.36932 * 120.00254 * 359.97438 * 7 2 1 10 10 C 1.46504 * 120.00287 * 179.97438 * 9 7 2 11 11 H 1.09001 * 109.46891 * 325.00667 * 10 9 7 12 12 C 1.53006 * 109.46883 * 85.00233 * 10 9 7 13 13 C 1.52997 * 109.47127 * 180.02562 * 12 10 9 14 14 C 1.53000 * 109.47060 * 300.00449 * 13 12 10 15 15 H 1.09001 * 109.47194 * 299.99650 * 14 13 12 16 16 N 1.46499 * 109.46840 * 180.02562 * 14 13 12 17 17 C 1.34782 * 120.00074 * 155.00031 * 16 14 13 18 18 O 1.21515 * 119.99904 * 359.97438 * 17 16 14 19 19 C 1.48162 * 120.00074 * 179.97438 * 17 16 14 20 20 C 1.40179 * 120.99968 * 359.72340 * 19 17 16 21 21 C 1.38015 * 118.70682 * 179.79516 * 20 19 17 22 22 N 1.31667 * 121.43221 * 0.45338 * 21 20 19 23 23 C 1.32949 * 122.25572 * 359.78487 * 22 21 20 24 24 C 1.38872 * 121.00151 * 179.97438 * 19 17 16 25 25 C 1.50972 * 133.29348 * 359.96382 * 24 19 17 26 26 C 1.51438 * 103.92097 * 180.02562 * 25 24 19 27 27 O 1.21272 * 126.45382 * 180.02562 * 26 25 24 28 28 N 1.34354 * 107.09339 * 0.02562 * 26 25 24 29 29 C 1.52996 * 109.47328 * 60.00126 * 14 13 12 30 30 C 1.52997 * 109.47417 * 205.00318 * 10 9 7 31 31 H 0.97001 * 119.99763 * 359.97438 * 1 2 3 32 32 H 0.97003 * 120.00089 * 0.02562 * 9 7 2 33 33 H 1.08998 * 109.46505 * 59.99948 * 12 10 9 34 34 H 1.08996 * 109.46884 * 300.00829 * 12 10 9 35 35 H 1.09002 * 109.47153 * 180.02562 * 13 12 10 36 36 H 1.09001 * 109.46832 * 60.00321 * 13 12 10 37 37 H 0.97002 * 120.00427 * 334.99530 * 16 14 13 38 38 H 1.08000 * 120.64561 * 359.96957 * 20 19 17 39 39 H 1.07995 * 119.28524 * 180.23915 * 21 20 19 40 40 H 1.09004 * 110.53315 * 298.64482 * 25 24 19 41 41 H 1.08998 * 110.53692 * 61.28068 * 25 24 19 42 42 H 0.97000 * 123.78656 * 180.02562 * 28 26 25 43 43 H 1.08992 * 109.47554 * 59.99639 * 29 14 13 44 44 H 1.09004 * 109.47108 * 179.97438 * 29 14 13 45 45 H 1.09002 * 109.47045 * 60.00127 * 30 10 9 46 46 H 1.09001 * 109.47375 * 300.00052 * 30 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4477 2.6527 0.7001 6 1 3.5478 1.4401 0.6999 7 6 2.0102 -1.2022 -0.0005 8 1 3.0903 -1.2021 -0.0001 9 7 1.3256 -2.3880 -0.0005 10 6 2.0581 -3.6568 -0.0017 11 1 2.9684 -3.5503 -0.5917 12 6 2.4230 -4.0363 1.4350 13 6 3.1885 -5.3610 1.4338 14 6 2.3113 -6.4563 0.8240 15 1 1.4010 -6.5633 1.4139 16 7 3.0441 -7.7248 0.8235 17 6 2.3705 -8.8923 0.8232 18 8 1.1554 -8.8926 0.8240 19 6 3.1117 -10.1752 0.8221 20 6 4.5132 -10.1993 0.8155 21 6 5.1552 -11.4210 0.8190 22 7 4.4801 -12.5515 0.8196 23 6 3.1510 -12.5842 0.8210 24 6 2.4387 -11.3900 0.8224 25 6 0.9758 -11.7631 0.8244 26 6 0.9861 -13.2775 0.8241 27 8 0.0155 -14.0046 0.8249 28 7 2.2729 -13.6637 0.8228 29 6 1.9466 -6.0769 -0.6126 30 6 1.1804 -4.7519 -0.6112 31 1 -0.4850 0.8401 0.0004 32 1 0.3556 -2.3881 -0.0005 33 1 1.5126 -4.1427 2.0249 34 1 3.0481 -3.2561 1.8692 35 1 3.4480 -5.6315 2.4573 36 1 4.0988 -5.2540 0.8439 37 1 4.0142 -7.7247 0.8232 38 1 5.0796 -9.2798 0.8105 39 1 6.2348 -11.4505 0.8179 40 1 0.4858 -11.3840 1.7213 41 1 0.4827 -11.3818 -0.0697 42 1 2.5578 -14.5909 0.8220 43 1 2.8568 -5.9699 -1.2025 44 1 1.3220 -6.8575 -1.0471 45 1 0.9205 -4.4815 -1.6346 46 1 0.2701 -4.8584 -0.0211 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001034684334.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:37:37 Heat of formation + Delta-G solvation = -17.782863 kcal Electronic energy + Delta-G solvation = -29104.081475 eV Core-core repulsion = 24993.660618 eV Total energy + Delta-G solvation = -4110.420857 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.164 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.31931 -40.32294 -39.34723 -38.01857 -36.60750 -35.03105 -33.85783 -33.08177 -31.28509 -30.50635 -30.45202 -29.04509 -27.45209 -25.00163 -23.70108 -23.02092 -22.39866 -21.96529 -21.42702 -20.75819 -19.72743 -18.75384 -17.80524 -17.45185 -17.06168 -16.76127 -16.48846 -15.73662 -15.62297 -15.27881 -15.07145 -14.60816 -14.39910 -14.31218 -14.06284 -13.87584 -13.82716 -13.60101 -13.21790 -12.98555 -12.81954 -12.67152 -12.27481 -11.87165 -11.60313 -11.53218 -10.93037 -10.88065 -10.85934 -10.80255 -10.74987 -10.53691 -10.33973 -10.32130 -10.18177 -9.95357 -9.76590 -9.59497 -9.16248 -8.92648 -8.88893 -6.96935 -5.77646 -3.06479 0.11433 0.33538 1.81649 2.05587 2.54009 2.71363 3.27546 3.38594 3.41681 3.46615 3.48667 3.83785 4.00527 4.05869 4.20066 4.51673 4.57273 4.76738 4.84997 4.95758 4.98977 5.06251 5.21111 5.27168 5.36987 5.48749 5.50595 5.59103 5.66461 5.68761 5.75978 5.81017 5.92819 5.97036 6.13409 6.17499 6.20316 6.24429 6.37686 6.52961 6.54029 6.65260 6.93633 7.07646 7.11499 7.19857 7.40593 7.68045 7.85059 8.41047 9.51962 10.10720 10.44973 11.44991 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.026626 B = 0.001903 C = 0.001806 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1051.362969 B =14709.327872 C =15500.236751 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.015 4.015 3 Si 0.906 3.094 4 H -0.290 1.290 5 H -0.292 1.292 6 H -0.282 1.282 7 C -0.238 4.238 8 H 0.070 0.930 9 N -0.725 5.725 10 C 0.177 3.823 11 H 0.046 0.954 12 C -0.132 4.132 13 C -0.122 4.122 14 C 0.145 3.855 15 H 0.091 0.909 16 N -0.713 5.713 17 C 0.554 3.446 18 O -0.520 6.520 19 C -0.035 4.035 20 C -0.166 4.166 21 C 0.140 3.860 22 N -0.490 5.490 23 C 0.350 3.650 24 C -0.131 4.131 25 C -0.107 4.107 26 C 0.537 3.463 27 O -0.489 6.489 28 N -0.646 5.646 29 C -0.121 4.121 30 C -0.121 4.121 31 H 0.255 0.745 32 H 0.384 0.616 33 H 0.058 0.942 34 H 0.067 0.933 35 H 0.060 0.940 36 H 0.064 0.936 37 H 0.399 0.601 38 H 0.150 0.850 39 H 0.174 0.826 40 H 0.136 0.864 41 H 0.137 0.863 42 H 0.419 0.581 43 H 0.062 0.938 44 H 0.062 0.938 45 H 0.066 0.934 46 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.659 -25.900 2.271 28.494 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.211 4.211 3 Si 0.737 3.263 4 H -0.218 1.218 5 H -0.218 1.218 6 H -0.208 1.208 7 C -0.369 4.369 8 H 0.088 0.912 9 N -0.366 5.366 10 C 0.067 3.933 11 H 0.064 0.936 12 C -0.173 4.173 13 C -0.161 4.161 14 C 0.042 3.958 15 H 0.109 0.891 16 N -0.364 5.364 17 C 0.339 3.661 18 O -0.396 6.396 19 C -0.046 4.046 20 C -0.187 4.187 21 C -0.017 4.017 22 N -0.206 5.206 23 C 0.118 3.882 24 C -0.137 4.137 25 C -0.146 4.146 26 C 0.324 3.676 27 O -0.361 6.361 28 N -0.293 5.293 29 C -0.160 4.160 30 C -0.160 4.160 31 H 0.065 0.935 32 H 0.217 0.783 33 H 0.077 0.923 34 H 0.085 0.915 35 H 0.079 0.921 36 H 0.083 0.917 37 H 0.234 0.766 38 H 0.167 0.833 39 H 0.191 0.809 40 H 0.154 0.846 41 H 0.154 0.846 42 H 0.258 0.742 43 H 0.081 0.919 44 H 0.080 0.920 45 H 0.085 0.915 46 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 10.643 -26.839 2.269 28.961 hybrid contribution 0.595 1.259 0.040 1.393 sum 11.238 -25.580 2.309 28.035 Atomic orbital electron populations 1.69663 1.05094 1.25633 1.57674 1.24753 0.95513 0.97695 1.03119 0.86212 0.78623 0.83981 0.77490 1.21768 1.21819 1.20810 1.19227 0.90934 0.84151 1.42624 0.91227 1.42440 1.05835 0.99779 1.88512 1.20239 0.94397 0.86086 0.92577 0.93600 1.22233 0.99744 0.94042 1.01280 1.21824 0.98693 0.95427 1.00120 1.21217 0.95956 0.80943 0.97727 0.89084 1.46089 1.10391 1.05770 1.74119 1.18077 0.87308 0.83332 0.77379 1.90810 1.12954 1.87251 1.48605 1.19642 0.93432 0.92585 0.98912 1.22291 0.93107 1.00611 1.02723 1.22467 1.00180 0.85577 0.93502 1.66618 1.05829 1.32416 1.15704 1.18267 0.88257 0.86329 0.95367 1.20424 0.96721 0.92342 1.04209 1.21088 0.93776 0.91644 1.08114 1.20658 0.81262 0.91531 0.74139 1.90857 1.35798 1.61368 1.48071 1.43556 1.06131 1.08861 1.70719 1.21852 1.00618 0.98007 0.95519 1.21775 0.98963 0.93533 1.01753 0.93517 0.78261 0.92335 0.91463 0.92118 0.91721 0.76626 0.83279 0.80934 0.84633 0.84588 0.74166 0.91931 0.91952 0.91537 0.91981 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.86 13.06 55.49 0.72 -27.14 16 2 C -0.01 -0.42 5.50 -17.43 -0.10 -0.51 16 3 Si 0.91 22.00 29.55 -169.99 -5.02 16.98 16 4 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 5 H -0.29 -7.19 7.11 56.52 0.40 -6.78 16 6 H -0.28 -6.64 7.11 56.52 0.40 -6.23 16 7 C -0.24 -6.42 9.93 -15.06 -0.15 -6.57 16 8 H 0.07 1.81 7.83 -52.48 -0.41 1.40 16 9 N -0.73 -17.57 5.12 -53.42 -0.27 -17.84 16 10 C 0.18 3.26 2.77 -67.93 -0.19 3.07 16 11 H 0.05 0.86 8.08 -51.93 -0.42 0.44 16 12 C -0.13 -2.11 5.50 -26.73 -0.15 -2.26 16 13 C -0.12 -1.39 5.39 -26.73 -0.14 -1.53 16 14 C 0.14 1.65 2.45 -67.93 -0.17 1.48 16 15 H 0.09 1.22 7.58 -51.93 -0.39 0.83 16 16 N -0.71 -6.16 5.04 -54.65 -0.28 -6.44 16 17 C 0.55 5.61 7.76 -12.18 -0.09 5.51 16 18 O -0.52 -7.00 15.30 5.35 0.08 -6.92 16 19 C -0.03 -0.28 5.89 -104.86 -0.62 -0.89 16 20 C -0.17 -0.84 9.64 -38.94 -0.38 -1.21 16 21 C 0.14 0.72 11.14 -17.70 -0.20 0.52 16 22 N -0.49 -3.73 10.36 -12.37 -0.13 -3.86 16 23 C 0.35 2.84 8.27 -154.43 -1.28 1.56 16 24 C -0.13 -1.11 6.17 -103.95 -0.64 -1.75 16 25 C -0.11 -0.90 5.63 -28.54 -0.16 -1.06 16 26 C 0.54 4.93 8.71 -10.81 -0.09 4.83 16 27 O -0.49 -6.06 18.03 5.56 0.10 -5.96 16 28 N -0.65 -4.81 5.85 -11.21 -0.07 -4.88 16 29 C -0.12 -1.52 5.50 -26.71 -0.15 -1.67 16 30 C -0.12 -1.92 5.39 -26.71 -0.14 -2.06 16 31 H 0.25 7.40 8.31 -40.82 -0.34 7.06 16 32 H 0.38 10.01 7.80 -40.82 -0.32 9.69 16 33 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 34 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 35 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 36 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 37 H 0.40 2.20 6.76 -40.82 -0.28 1.93 16 38 H 0.15 0.30 6.56 -52.49 -0.34 -0.04 16 39 H 0.17 0.31 8.06 -52.49 -0.42 -0.12 16 40 H 0.14 1.12 8.14 -51.93 -0.42 0.69 16 41 H 0.14 1.13 8.14 -51.93 -0.42 0.71 16 42 H 0.42 2.35 8.96 -40.82 -0.37 1.98 16 43 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 44 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 45 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 46 H 0.06 1.02 8.14 -51.93 -0.42 0.59 16 LS Contribution 380.65 15.07 5.74 5.74 Total: -1.00 -34.13 380.65 -10.08 -44.21 By element: Atomic # 1 Polarization: 14.97 SS G_CDS: -6.31 Total: 8.65 kcal Atomic # 6 Polarization: 2.10 SS G_CDS: -4.64 Total: -2.54 kcal Atomic # 7 Polarization: -60.14 SS G_CDS: -0.02 Total: -60.16 kcal Atomic # 8 Polarization: -13.06 SS G_CDS: 0.18 Total: -12.88 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -5.02 Total: 16.98 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -34.13 -10.08 -44.21 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034684334.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.427 kcal (2) G-P(sol) polarization free energy of solvation -34.132 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.705 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.078 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.210 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.783 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds