Wall clock time and date at job start Wed Apr 1 2020 02:37:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86795 * 120.00127 * 2 1 4 4 H 1.48507 * 109.47242 * 270.00725 * 3 2 1 5 5 H 1.48503 * 109.47238 * 30.00138 * 3 2 1 6 6 H 1.48498 * 109.47308 * 150.00496 * 3 2 1 7 7 C 1.38811 * 119.99809 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99682 * 180.02562 * 7 2 1 9 9 N 1.36932 * 120.00254 * 359.97438 * 7 2 1 10 10 C 1.46504 * 120.00287 * 179.97438 * 9 7 2 11 11 H 1.09001 * 109.46891 * 325.00667 * 10 9 7 12 12 C 1.53006 * 109.46883 * 85.00233 * 10 9 7 13 13 C 1.52997 * 109.47127 * 180.02562 * 12 10 9 14 14 C 1.53000 * 109.47060 * 300.00449 * 13 12 10 15 15 H 1.09001 * 109.47194 * 299.99650 * 14 13 12 16 16 N 1.46499 * 109.46840 * 180.02562 * 14 13 12 17 17 C 1.34782 * 120.00074 * 155.00031 * 16 14 13 18 18 O 1.21515 * 119.99904 * 359.97438 * 17 16 14 19 19 C 1.48162 * 120.00074 * 179.97438 * 17 16 14 20 20 C 1.40179 * 120.99968 * 359.72340 * 19 17 16 21 21 C 1.38015 * 118.70682 * 179.79516 * 20 19 17 22 22 N 1.31667 * 121.43221 * 0.45338 * 21 20 19 23 23 C 1.32949 * 122.25572 * 359.78487 * 22 21 20 24 24 C 1.38872 * 121.00151 * 179.97438 * 19 17 16 25 25 C 1.50972 * 133.29348 * 359.96382 * 24 19 17 26 26 C 1.51438 * 103.92097 * 180.02562 * 25 24 19 27 27 O 1.21272 * 126.45382 * 180.02562 * 26 25 24 28 28 N 1.34354 * 107.09339 * 0.02562 * 26 25 24 29 29 C 1.52996 * 109.47328 * 60.00126 * 14 13 12 30 30 C 1.52997 * 109.47417 * 205.00318 * 10 9 7 31 31 H 0.97001 * 119.99763 * 359.97438 * 1 2 3 32 32 H 0.97003 * 120.00089 * 0.02562 * 9 7 2 33 33 H 1.08998 * 109.46505 * 59.99948 * 12 10 9 34 34 H 1.08996 * 109.46884 * 300.00829 * 12 10 9 35 35 H 1.09002 * 109.47153 * 180.02562 * 13 12 10 36 36 H 1.09001 * 109.46832 * 60.00321 * 13 12 10 37 37 H 0.97002 * 120.00427 * 334.99530 * 16 14 13 38 38 H 1.08000 * 120.64561 * 359.96957 * 20 19 17 39 39 H 1.07995 * 119.28524 * 180.23915 * 21 20 19 40 40 H 1.09004 * 110.53315 * 298.64482 * 25 24 19 41 41 H 1.08998 * 110.53692 * 61.28068 * 25 24 19 42 42 H 0.97000 * 123.78656 * 180.02562 * 28 26 25 43 43 H 1.08992 * 109.47554 * 59.99639 * 29 14 13 44 44 H 1.09004 * 109.47108 * 179.97438 * 29 14 13 45 45 H 1.09002 * 109.47045 * 60.00127 * 30 10 9 46 46 H 1.09001 * 109.47375 * 300.00052 * 30 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4477 2.6527 0.7001 6 1 3.5478 1.4401 0.6999 7 6 2.0102 -1.2022 -0.0005 8 1 3.0903 -1.2021 -0.0001 9 7 1.3256 -2.3880 -0.0005 10 6 2.0581 -3.6568 -0.0017 11 1 2.9684 -3.5503 -0.5917 12 6 2.4230 -4.0363 1.4350 13 6 3.1885 -5.3610 1.4338 14 6 2.3113 -6.4563 0.8240 15 1 1.4010 -6.5633 1.4139 16 7 3.0441 -7.7248 0.8235 17 6 2.3705 -8.8923 0.8232 18 8 1.1554 -8.8926 0.8240 19 6 3.1117 -10.1752 0.8221 20 6 4.5132 -10.1993 0.8155 21 6 5.1552 -11.4210 0.8190 22 7 4.4801 -12.5515 0.8196 23 6 3.1510 -12.5842 0.8210 24 6 2.4387 -11.3900 0.8224 25 6 0.9758 -11.7631 0.8244 26 6 0.9861 -13.2775 0.8241 27 8 0.0155 -14.0046 0.8249 28 7 2.2729 -13.6637 0.8228 29 6 1.9466 -6.0769 -0.6126 30 6 1.1804 -4.7519 -0.6112 31 1 -0.4850 0.8401 0.0004 32 1 0.3556 -2.3881 -0.0005 33 1 1.5126 -4.1427 2.0249 34 1 3.0481 -3.2561 1.8692 35 1 3.4480 -5.6315 2.4573 36 1 4.0988 -5.2540 0.8439 37 1 4.0142 -7.7247 0.8232 38 1 5.0796 -9.2798 0.8105 39 1 6.2348 -11.4505 0.8179 40 1 0.4858 -11.3840 1.7213 41 1 0.4827 -11.3818 -0.0697 42 1 2.5578 -14.5909 0.8220 43 1 2.8568 -5.9699 -1.2025 44 1 1.3220 -6.8575 -1.0471 45 1 0.9205 -4.4815 -1.6346 46 1 0.2701 -4.8584 -0.0211 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001034684334.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:37:36 Heat of formation + Delta-G solvation = -42.368330 kcal Electronic energy + Delta-G solvation = -29105.147581 eV Core-core repulsion = 24993.660618 eV Total energy + Delta-G solvation = -4111.486963 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.164 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.92639 -41.15074 -40.08725 -39.15786 -37.28604 -36.38118 -34.80473 -34.25588 -32.54150 -31.65224 -31.52050 -29.69297 -28.81895 -25.99332 -25.16552 -23.69527 -23.58508 -22.69697 -22.39420 -21.66938 -20.95715 -19.54705 -19.03678 -18.45278 -18.07422 -17.44035 -17.35093 -16.85758 -16.34626 -16.20990 -16.10129 -15.69099 -15.34677 -15.30722 -15.12956 -15.05098 -14.78818 -14.52008 -14.40670 -14.00686 -13.90240 -13.56902 -13.36784 -13.14641 -13.03813 -12.80605 -12.40563 -12.22896 -12.19499 -11.99177 -11.96899 -11.71150 -11.61685 -11.55523 -11.32329 -11.05832 -10.92210 -10.82471 -10.54346 -10.04550 -9.46704 -8.96177 -7.90497 -5.18591 -0.45698 -0.18987 1.14131 1.47709 1.49168 1.50735 1.58910 1.83554 1.94960 2.59184 2.72597 2.78161 3.23309 3.41445 3.42955 3.57271 3.64239 3.78714 3.90297 3.92804 4.13977 4.27543 4.31687 4.32010 4.42809 4.44543 4.51217 4.59582 4.64238 4.70160 4.72531 4.86189 4.92145 5.04830 5.15493 5.16999 5.20949 5.28150 5.34079 5.34234 5.45818 5.55392 5.59536 5.62349 5.70541 6.32022 6.50016 6.55746 6.82053 7.14733 7.37181 8.15755 8.37232 9.33419 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.026626 B = 0.001903 C = 0.001806 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1051.362969 B =14709.327872 C =15500.236751 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.973 5.973 2 C -0.083 4.083 3 Si 0.971 3.029 4 H -0.289 1.289 5 H -0.300 1.300 6 H -0.266 1.266 7 C -0.231 4.231 8 H 0.080 0.920 9 N -0.742 5.742 10 C 0.171 3.829 11 H 0.050 0.950 12 C -0.124 4.124 13 C -0.107 4.107 14 C 0.154 3.846 15 H 0.068 0.932 16 N -0.696 5.696 17 C 0.554 3.446 18 O -0.561 6.561 19 C -0.046 4.046 20 C -0.143 4.143 21 C 0.144 3.856 22 N -0.501 5.501 23 C 0.336 3.664 24 C -0.145 4.145 25 C -0.105 4.105 26 C 0.541 3.459 27 O -0.529 6.529 28 N -0.636 5.636 29 C -0.110 4.110 30 C -0.114 4.114 31 H 0.248 0.752 32 H 0.369 0.631 33 H 0.041 0.959 34 H 0.051 0.949 35 H 0.082 0.918 36 H 0.090 0.910 37 H 0.419 0.581 38 H 0.188 0.812 39 H 0.214 0.786 40 H 0.133 0.867 41 H 0.133 0.867 42 H 0.427 0.573 43 H 0.082 0.918 44 H 0.057 0.943 45 H 0.053 0.947 46 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.906 -26.678 2.431 31.155 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.625 5.625 2 C -0.275 4.275 3 Si 0.801 3.199 4 H -0.216 1.216 5 H -0.227 1.227 6 H -0.191 1.191 7 C -0.363 4.363 8 H 0.098 0.902 9 N -0.381 5.381 10 C 0.063 3.937 11 H 0.068 0.932 12 C -0.165 4.165 13 C -0.146 4.146 14 C 0.049 3.951 15 H 0.086 0.914 16 N -0.348 5.348 17 C 0.341 3.659 18 O -0.440 6.440 19 C -0.058 4.058 20 C -0.164 4.164 21 C -0.014 4.014 22 N -0.216 5.216 23 C 0.105 3.895 24 C -0.151 4.151 25 C -0.144 4.144 26 C 0.329 3.671 27 O -0.404 6.404 28 N -0.283 5.283 29 C -0.149 4.149 30 C -0.153 4.153 31 H 0.057 0.943 32 H 0.200 0.800 33 H 0.060 0.940 34 H 0.070 0.930 35 H 0.101 0.899 36 H 0.108 0.892 37 H 0.258 0.742 38 H 0.205 0.795 39 H 0.230 0.770 40 H 0.151 0.849 41 H 0.150 0.850 42 H 0.267 0.733 43 H 0.101 0.899 44 H 0.076 0.924 45 H 0.072 0.928 46 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 15.006 -27.668 2.433 31.569 hybrid contribution -0.615 1.462 -0.023 1.586 sum 14.391 -26.206 2.411 29.994 Atomic orbital electron populations 1.69833 1.06710 1.25813 1.60128 1.25579 0.96342 1.01176 1.04391 0.85164 0.77796 0.79672 0.77306 1.21635 1.22732 1.19064 1.19649 0.91506 0.85129 1.40036 0.90224 1.42723 1.05435 1.01302 1.88628 1.20519 0.94255 0.84503 0.94377 0.93238 1.22011 0.99430 0.96441 0.98635 1.21681 0.98547 0.92297 1.02068 1.20888 0.95613 0.82232 0.96361 0.91393 1.45777 1.11240 1.04287 1.73498 1.18398 0.86932 0.84196 0.76407 1.90804 1.14926 1.87822 1.50405 1.19560 0.94675 0.90987 1.00533 1.22717 0.91626 1.02311 0.99777 1.23223 1.01824 0.84723 0.91603 1.66700 1.05325 1.33918 1.15665 1.18287 0.88648 0.85991 0.96579 1.20462 0.96355 0.93059 1.05261 1.21004 0.94522 0.91070 1.07799 1.20669 0.81317 0.91641 0.73442 1.90829 1.37098 1.62222 1.50225 1.43394 1.05604 1.09429 1.69895 1.21746 1.00804 0.95565 0.96816 1.21648 0.98539 0.94676 1.00407 0.94281 0.79967 0.94017 0.92985 0.89913 0.89170 0.74248 0.79475 0.76980 0.84946 0.84964 0.73255 0.89931 0.92390 0.92782 0.93372 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -59.79 13.06 21.65 0.28 -59.51 16 2 C -0.08 -4.73 5.50 84.86 0.47 -4.27 16 3 Si 0.97 45.49 29.55 68.60 2.03 47.52 16 4 H -0.29 -13.35 7.11 99.48 0.71 -12.64 16 5 H -0.30 -14.36 7.11 99.48 0.71 -13.65 16 6 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16 7 C -0.23 -12.46 9.93 84.03 0.83 -11.63 16 8 H 0.08 4.05 7.83 -2.91 -0.02 4.02 16 9 N -0.74 -36.50 5.12 -322.93 -1.65 -38.15 16 10 C 0.17 6.21 2.77 44.99 0.12 6.33 16 11 H 0.05 1.77 8.08 -2.39 -0.02 1.75 16 12 C -0.12 -3.83 5.50 30.60 0.17 -3.67 16 13 C -0.11 -2.08 5.39 30.59 0.16 -1.91 16 14 C 0.15 3.12 2.45 44.99 0.11 3.23 16 15 H 0.07 1.76 7.58 -2.39 -0.02 1.74 16 16 N -0.70 -9.52 5.04 -445.10 -2.24 -11.77 16 17 C 0.55 10.04 7.76 86.88 0.67 10.72 16 18 O -0.56 -14.92 15.30 -3.76 -0.06 -14.98 16 19 C -0.05 -0.62 5.89 -20.02 -0.12 -0.74 16 20 C -0.14 -0.76 9.64 22.69 0.22 -0.54 16 21 C 0.14 0.80 11.14 84.66 0.94 1.75 16 22 N -0.50 -6.16 10.36 -193.06 -2.00 -8.16 16 23 C 0.34 4.98 8.27 132.83 1.10 6.08 16 24 C -0.14 -2.31 6.17 -19.43 -0.12 -2.43 16 25 C -0.10 -1.83 5.63 29.42 0.17 -1.67 16 26 C 0.54 10.34 8.71 87.96 0.77 11.11 16 27 O -0.53 -13.81 18.03 -3.01 -0.05 -13.86 16 28 N -0.64 -9.34 5.85 -308.01 -1.80 -11.14 16 29 C -0.11 -2.56 5.50 30.61 0.17 -2.40 16 30 C -0.11 -3.59 5.39 30.61 0.17 -3.42 16 31 H 0.25 14.87 8.31 -92.71 -0.77 14.10 16 32 H 0.37 20.00 7.80 -92.71 -0.72 19.27 16 33 H 0.04 1.41 8.14 -2.39 -0.02 1.39 16 34 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 35 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 36 H 0.09 1.36 8.14 -2.39 -0.02 1.34 16 37 H 0.42 2.32 6.76 -92.71 -0.63 1.70 16 38 H 0.19 -0.51 6.56 -2.91 -0.02 -0.53 16 39 H 0.21 -0.55 8.06 -2.91 -0.02 -0.58 16 40 H 0.13 2.35 8.14 -2.39 -0.02 2.33 16 41 H 0.13 2.36 8.14 -2.39 -0.02 2.35 16 42 H 0.43 4.67 8.96 -92.71 -0.83 3.84 16 43 H 0.08 1.62 8.14 -2.39 -0.02 1.61 16 44 H 0.06 1.44 8.14 -2.38 -0.02 1.42 16 45 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 46 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 Total: -1.00 -77.66 380.65 -0.80 -78.45 By element: Atomic # 1 Polarization: 26.18 SS G_CDS: -1.13 Total: 25.05 kcal Atomic # 6 Polarization: 0.72 SS G_CDS: 5.83 Total: 6.55 kcal Atomic # 7 Polarization: -121.31 SS G_CDS: -7.42 Total: -128.73 kcal Atomic # 8 Polarization: -28.73 SS G_CDS: -0.11 Total: -28.84 kcal Atomic # 14 Polarization: 45.49 SS G_CDS: 2.03 Total: 47.52 kcal Total: -77.66 -0.80 -78.45 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034684334.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.085 kcal (2) G-P(sol) polarization free energy of solvation -77.655 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.570 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.798 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.453 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.368 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds