Wall clock time and date at job start Wed Apr 1 2020 02:27:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86800 * 119.99810 * 2 1 4 4 H 1.48489 * 109.47435 * 179.97438 * 3 2 1 5 5 H 1.48508 * 109.47233 * 300.00200 * 3 2 1 6 6 H 1.48506 * 109.47246 * 59.99401 * 3 2 1 7 7 C 1.38803 * 120.00056 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99647 * 164.27444 * 7 2 1 9 9 N 1.36930 * 120.00406 * 344.27557 * 7 2 1 10 10 C 1.47232 * 121.33407 * 155.38650 * 9 7 2 11 11 C 1.52789 * 107.90828 * 115.83107 * 10 9 7 12 12 C 1.50597 * 110.91318 * 47.35504 * 11 10 9 13 13 C 1.38975 * 117.63086 * 160.05502 * 12 11 10 14 14 C 1.50697 * 119.71385 * 359.29198 * 13 12 11 15 15 N 1.46495 * 109.47602 * 79.72170 * 14 13 12 16 16 C 1.34772 * 120.00287 * 180.02562 * 15 14 13 17 17 O 1.21282 * 120.00211 * 359.97438 * 16 15 14 18 18 C 1.50701 * 120.00249 * 180.02562 * 16 15 14 19 19 H 1.09002 * 110.48899 * 42.69541 * 18 16 15 20 20 C 1.54106 * 110.54764 * 279.99632 * 18 16 15 21 21 N 1.47044 * 103.99206 * 241.33459 * 20 18 16 22 22 C 1.34256 * 109.00753 * 0.11995 * 21 20 18 23 23 O 1.21591 * 123.00075 * 179.97438 * 22 21 20 24 24 N 1.33946 * 113.95787 * 359.86571 * 22 21 20 25 25 C 1.37908 * 120.57787 * 179.00736 * 13 12 11 26 26 C 1.38268 * 119.82964 * 0.33573 * 25 13 12 27 27 C 1.37956 * 119.71262 * 0.26601 * 26 25 13 28 28 C 1.37673 * 122.85138 * 340.07832 * 12 11 10 29 29 C 1.46683 * 121.32861 * 335.40503 * 9 7 2 30 30 H 0.97002 * 120.00380 * 0.02562 * 1 2 3 31 31 H 1.09004 * 109.77108 * 235.44048 * 10 9 7 32 32 H 1.09006 * 109.76736 * 356.17901 * 10 9 7 33 33 H 1.09006 * 109.19722 * 167.88500 * 11 10 9 34 34 H 1.08997 * 109.20117 * 287.22974 * 11 10 9 35 35 H 1.09003 * 109.46710 * 319.71804 * 14 13 12 36 36 H 1.09005 * 109.47126 * 199.72398 * 14 13 12 37 37 H 0.97004 * 119.99855 * 0.02562 * 15 14 13 38 38 H 1.09006 * 110.54797 * 359.97438 * 20 18 16 39 39 H 1.08999 * 110.55032 * 122.65988 * 20 18 16 40 40 H 0.97000 * 125.40966 * 180.02562 * 21 20 18 41 41 H 0.97003 * 125.41207 * 180.02562 * 24 22 21 42 42 H 1.07997 * 120.09040 * 180.31325 * 25 13 12 43 43 H 1.07994 * 120.14594 * 180.27931 * 26 25 13 44 44 H 1.07998 * 119.74821 * 179.83955 * 27 26 25 45 45 H 1.09003 * 109.43382 * 104.29521 * 29 9 7 46 46 H 1.09000 * 109.39576 * 344.41149 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7101 1.3466 0.0006 5 1 1.8913 2.3965 -1.2125 6 1 1.8913 2.3966 1.2125 7 6 2.0102 -1.2021 0.0005 8 1 3.0600 -1.2196 -0.2530 9 7 1.3641 -2.3656 0.3224 10 6 1.8516 -3.6698 -0.1564 11 6 2.2719 -4.4904 1.0619 12 6 1.2148 -4.4418 2.1335 13 6 1.2303 -5.4404 3.0999 14 6 2.2734 -6.5262 3.0354 15 7 3.5377 -6.0217 3.5768 16 6 4.6200 -6.8235 3.6199 17 8 4.5473 -7.9630 3.2109 18 6 5.9205 -6.3047 4.1774 19 1 5.7429 -5.7241 5.0827 20 6 6.6590 -5.4544 3.1255 21 7 7.9242 -6.1726 2.9123 22 6 7.9446 -7.2639 3.6940 23 8 8.8772 -8.0438 3.7183 24 7 6.8465 -7.4149 4.4460 25 6 0.3031 -5.4432 4.1207 26 6 -0.6557 -4.4488 4.1817 27 6 -0.6810 -3.4633 3.2167 28 6 0.2509 -3.4603 2.1876 29 6 0.1584 -2.3625 1.1578 30 1 -0.4851 0.8400 -0.0004 31 1 1.0556 -4.1867 -0.6926 32 1 2.7066 -3.5240 -0.8167 33 1 2.4312 -5.5255 0.7593 34 1 3.2018 -4.0869 1.4625 35 1 2.4176 -6.8302 1.9986 36 1 1.9428 -7.3829 3.6226 37 1 3.5958 -5.1104 3.9043 38 1 6.0852 -5.4077 2.1999 39 1 6.8480 -4.4515 3.5085 40 1 8.6289 -5.9011 2.3035 41 1 6.6870 -8.1418 5.0683 42 1 0.3255 -6.2202 4.8704 43 1 -1.3814 -4.4435 4.9814 44 1 -1.4313 -2.6877 3.2623 45 1 -0.7178 -2.5266 0.5305 46 1 0.0691 -1.3997 1.6609 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001051298944.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:27:21 Heat of formation + Delta-G solvation = -26.718050 kcal Electronic energy + Delta-G solvation = -30117.365212 eV Core-core repulsion = 26006.556897 eV Total energy + Delta-G solvation = -4110.808316 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.164 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.32380 -41.08907 -40.08738 -37.65534 -37.34840 -36.10055 -34.42988 -33.99466 -33.17696 -31.73453 -30.80013 -29.84508 -27.40716 -26.99579 -24.80088 -24.60270 -23.71495 -22.82601 -21.73787 -21.61675 -20.56760 -19.14032 -18.61716 -18.58657 -17.50950 -17.27333 -16.96982 -16.72763 -16.50327 -16.43686 -15.93718 -15.86576 -15.39754 -15.34957 -15.06903 -14.94324 -14.66021 -14.42001 -14.08132 -14.02011 -13.83213 -13.64971 -13.33423 -13.22804 -13.10551 -12.77756 -12.73779 -12.48254 -12.33914 -12.09769 -11.81008 -11.59432 -11.57686 -11.39839 -11.27015 -10.66572 -10.57123 -10.09810 -9.87244 -9.48900 -9.27610 -8.74715 -7.87926 -5.30472 0.38549 0.61054 1.42550 1.48723 1.50999 1.60720 1.72463 1.97752 2.25967 2.52110 2.93605 3.08662 3.29868 3.32414 3.62945 3.65166 3.75994 3.98352 4.01260 4.07080 4.20575 4.36162 4.38713 4.43744 4.60719 4.64606 4.68472 4.73311 4.78955 4.83305 4.87350 5.04411 5.16857 5.19484 5.22265 5.35300 5.44087 5.49445 5.63232 5.67996 5.74724 5.91171 5.99454 6.20442 6.21559 6.27323 6.34592 6.52777 7.13254 7.15757 7.51557 7.82577 8.37489 9.20980 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.010698 B = 0.003173 C = 0.002608 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2616.649577 B = 8823.579308 C =10733.194930 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.941 5.941 2 C -0.054 4.054 3 Si 0.967 3.033 4 H -0.262 1.262 5 H -0.297 1.297 6 H -0.292 1.292 7 C -0.254 4.254 8 H 0.076 0.924 9 N -0.610 5.610 10 C 0.135 3.865 11 C -0.085 4.085 12 C -0.055 4.055 13 C -0.113 4.113 14 C 0.171 3.829 15 N -0.701 5.701 16 C 0.505 3.495 17 O -0.571 6.571 18 C 0.108 3.892 19 H 0.162 0.838 20 C 0.100 3.900 21 N -0.732 5.732 22 C 0.695 3.305 23 O -0.639 6.639 24 N -0.711 5.711 25 C -0.103 4.103 26 C -0.122 4.122 27 C -0.124 4.124 28 C -0.107 4.107 29 C 0.220 3.780 30 H 0.249 0.751 31 H 0.016 0.984 32 H 0.064 0.936 33 H 0.084 0.916 34 H 0.081 0.919 35 H 0.070 0.930 36 H 0.081 0.919 37 H 0.416 0.584 38 H 0.090 0.910 39 H 0.136 0.864 40 H 0.439 0.561 41 H 0.436 0.564 42 H 0.149 0.851 43 H 0.146 0.854 44 H 0.114 0.886 45 H 0.000 1.000 46 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.972 -9.401 12.689 16.884 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.588 5.588 2 C -0.248 4.248 3 Si 0.796 3.204 4 H -0.186 1.186 5 H -0.224 1.224 6 H -0.218 1.218 7 C -0.384 4.384 8 H 0.094 0.906 9 N -0.333 5.333 10 C 0.010 3.990 11 C -0.123 4.123 12 C -0.056 4.056 13 C -0.113 4.113 14 C 0.048 3.952 15 N -0.353 5.353 16 C 0.290 3.710 17 O -0.450 6.450 18 C -0.002 4.002 19 H 0.179 0.821 20 C -0.025 4.025 21 N -0.395 5.395 22 C 0.394 3.606 23 O -0.521 6.521 24 N -0.372 5.372 25 C -0.121 4.121 26 C -0.140 4.140 27 C -0.143 4.143 28 C -0.108 4.108 29 C 0.094 3.906 30 H 0.058 0.942 31 H 0.034 0.966 32 H 0.083 0.917 33 H 0.102 0.898 34 H 0.099 0.901 35 H 0.088 0.912 36 H 0.100 0.900 37 H 0.253 0.747 38 H 0.108 0.892 39 H 0.153 0.847 40 H 0.283 0.717 41 H 0.278 0.722 42 H 0.167 0.833 43 H 0.164 0.836 44 H 0.132 0.868 45 H 0.018 0.982 46 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 6.295 -10.436 12.369 17.365 hybrid contribution -0.209 1.424 -0.479 1.517 sum 6.086 -9.012 11.891 16.113 Atomic orbital electron populations 1.70183 1.06690 1.25744 1.56142 1.25773 0.96078 1.01465 1.01527 0.85199 0.78847 0.79826 0.76544 1.18563 1.22430 1.21847 1.19564 0.92763 0.85246 1.40802 0.90587 1.44258 1.30267 1.02206 1.56530 1.21088 0.97205 0.86050 0.94693 1.20870 0.96849 1.00108 0.94473 1.19459 0.95979 0.93627 0.96539 1.19796 0.98728 0.96473 0.96313 1.20071 0.81261 0.94027 0.99817 1.45940 1.09452 1.16943 1.62998 1.21142 0.85820 0.85555 0.78516 1.90758 1.85072 1.20440 1.48727 1.22134 0.87400 0.88647 1.02022 0.82103 1.22573 0.83806 0.97258 0.98874 1.45141 1.22309 1.26035 1.45966 1.16243 0.82813 0.82009 0.79559 1.90954 1.39040 1.49245 1.72853 1.44816 1.17177 1.29543 1.45683 1.21176 0.94393 0.98894 0.97619 1.21250 0.99622 0.94305 0.98838 1.21268 0.98484 0.99660 0.94886 1.20637 0.95901 0.97167 0.97119 1.19313 0.87641 0.94512 0.89085 0.94174 0.96619 0.91740 0.89831 0.90075 0.91232 0.90045 0.74659 0.89220 0.84660 0.71722 0.72177 0.83313 0.83576 0.86836 0.98189 0.92089 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -53.70 11.10 21.65 0.24 -53.46 16 2 C -0.05 -2.85 4.99 84.86 0.42 -2.43 16 3 Si 0.97 42.56 29.58 68.60 2.03 44.59 16 4 H -0.26 -10.69 7.11 99.48 0.71 -9.98 16 5 H -0.30 -13.31 7.11 99.48 0.71 -12.60 16 6 H -0.29 -12.84 7.11 99.48 0.71 -12.14 16 7 C -0.25 -13.09 9.69 84.03 0.81 -12.28 16 8 H 0.08 3.73 7.88 -2.91 -0.02 3.71 16 9 N -0.61 -28.87 2.97 -704.20 -2.09 -30.96 16 10 C 0.14 5.14 6.52 86.17 0.56 5.70 16 11 C -0.08 -2.44 5.24 29.75 0.16 -2.29 16 12 C -0.06 -1.64 5.76 -19.85 -0.11 -1.76 16 13 C -0.11 -2.49 5.26 -19.77 -0.10 -2.60 16 14 C 0.17 3.16 5.10 85.63 0.44 3.60 16 15 N -0.70 -9.95 5.52 -466.80 -2.58 -12.53 16 16 C 0.50 8.44 6.95 87.66 0.61 9.05 16 17 O -0.57 -15.18 16.56 -3.04 -0.05 -15.23 16 18 C 0.11 1.16 4.17 44.52 0.19 1.35 16 19 H 0.16 0.43 8.14 -2.39 -0.02 0.41 16 20 C 0.10 0.94 7.69 86.65 0.67 1.61 16 21 N -0.73 -11.37 6.40 -476.91 -3.05 -14.42 16 22 C 0.70 16.19 8.92 179.48 1.60 17.79 16 23 O -0.64 -21.25 18.05 -4.00 -0.07 -21.32 16 24 N -0.71 -12.29 5.60 -460.09 -2.58 -14.87 16 25 C -0.10 -2.02 9.65 22.20 0.21 -1.81 16 26 C -0.12 -2.76 10.05 22.21 0.22 -2.54 16 27 C -0.12 -3.80 9.62 22.35 0.21 -3.58 16 28 C -0.11 -3.86 5.82 -19.82 -0.12 -3.97 16 29 C 0.22 10.29 4.85 85.63 0.42 10.71 16 30 H 0.25 13.81 8.31 -92.71 -0.77 13.04 16 31 H 0.02 0.62 8.14 -2.38 -0.02 0.60 16 32 H 0.06 2.35 7.96 -2.38 -0.02 2.33 16 33 H 0.08 2.07 6.26 -2.38 -0.01 2.05 16 34 H 0.08 2.15 8.14 -2.39 -0.02 2.14 16 35 H 0.07 1.48 6.34 -2.39 -0.02 1.46 16 36 H 0.08 1.42 7.99 -2.38 -0.02 1.40 16 37 H 0.42 4.37 8.46 -92.71 -0.78 3.58 16 38 H 0.09 0.92 7.72 -2.38 -0.02 0.90 16 39 H 0.14 0.39 8.14 -2.39 -0.02 0.37 16 40 H 0.44 5.59 8.96 -92.71 -0.83 4.76 16 41 H 0.44 7.04 8.96 -92.71 -0.83 6.20 16 42 H 0.15 2.01 8.02 -2.91 -0.02 1.99 16 43 H 0.15 2.43 8.06 -2.91 -0.02 2.41 16 44 H 0.11 3.49 8.05 -2.91 -0.02 3.46 16 45 H 0.00 0.02 8.14 -2.39 -0.02 0.00 16 46 H 0.06 3.22 6.34 -2.39 -0.02 3.20 16 Total: -1.00 -79.00 377.43 -3.35 -82.35 By element: Atomic # 1 Polarization: 20.69 SS G_CDS: -1.39 Total: 19.30 kcal Atomic # 6 Polarization: 10.36 SS G_CDS: 6.19 Total: 16.55 kcal Atomic # 7 Polarization: -116.19 SS G_CDS: -10.06 Total: -126.24 kcal Atomic # 8 Polarization: -36.43 SS G_CDS: -0.12 Total: -36.55 kcal Atomic # 14 Polarization: 42.56 SS G_CDS: 2.03 Total: 44.59 kcal Total: -79.00 -3.35 -82.35 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001051298944.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.635 kcal (2) G-P(sol) polarization free energy of solvation -79.003 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.368 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.350 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.353 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.718 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds