Wall clock time and date at job start Wed Apr 1 2020 02:42:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86802 * 120.00255 * 2 1 4 4 H 1.48494 * 109.47204 * 270.00385 * 3 2 1 5 5 H 1.48501 * 109.46950 * 30.00776 * 3 2 1 6 6 H 1.48497 * 109.46881 * 150.00014 * 3 2 1 7 7 C 1.38814 * 119.99762 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99800 * 192.02672 * 7 2 1 9 9 N 1.36936 * 120.00053 * 12.02488 * 7 2 1 10 10 C 1.46687 * 121.33864 * 27.34113 * 9 7 2 11 11 C 1.50801 * 109.67085 * 135.56617 * 10 9 7 12 12 C 1.38841 * 117.80948 * 191.71803 * 11 10 9 13 13 C 1.37962 * 120.50520 * 180.89504 * 12 11 10 14 14 C 1.38268 * 119.71555 * 359.52824 * 13 12 11 15 15 C 1.37902 * 119.82867 * 0.03347 * 14 13 12 16 16 C 1.37675 * 122.34661 * 11.69740 * 11 10 9 17 17 C 1.50597 * 122.85622 * 358.37938 * 16 11 10 18 18 C 1.47236 * 121.33419 * 207.36715 * 9 7 2 19 19 H 1.09002 * 109.76820 * 124.56939 * 18 9 7 20 20 C 1.53001 * 109.77061 * 3.78152 * 18 9 7 21 21 N 1.46501 * 109.47160 * 55.00220 * 20 18 9 22 22 C 1.34777 * 120.00143 * 179.97438 * 21 20 18 23 23 O 1.21279 * 119.99712 * 359.97438 * 22 21 20 24 24 C 1.50700 * 119.99779 * 179.97438 * 22 21 20 25 25 H 1.08994 * 110.49028 * 38.75908 * 24 22 21 26 26 C 1.54096 * 110.55275 * 275.89287 * 24 22 21 27 27 N 1.47053 * 103.86892 * 241.41109 * 26 24 22 28 28 C 1.33950 * 109.17602 * 359.97438 * 27 26 24 29 29 O 1.21586 * 123.04080 * 179.97438 * 28 27 26 30 30 N 1.33956 * 113.91463 * 0.02562 * 28 27 26 31 31 H 0.97001 * 119.99717 * 359.97438 * 1 2 3 32 32 H 1.09005 * 109.43456 * 15.50455 * 10 9 7 33 33 H 1.08992 * 109.40571 * 255.61027 * 10 9 7 34 34 H 1.07998 * 119.74550 * 0.68199 * 12 11 10 35 35 H 1.07995 * 120.13980 * 179.80972 * 13 12 11 36 36 H 1.08003 * 120.08335 * 180.02562 * 14 13 12 37 37 H 1.08006 * 119.71207 * 179.97438 * 15 14 13 38 38 H 1.09003 * 109.19480 * 140.58948 * 17 16 11 39 39 H 1.08998 * 109.19761 * 259.87482 * 17 16 11 40 40 H 1.08998 * 109.46712 * 174.99819 * 20 18 9 41 41 H 1.08999 * 109.47177 * 295.00006 * 20 18 9 42 42 H 0.97004 * 119.99966 * 359.97438 * 21 20 18 43 43 H 1.09007 * 110.54939 * 0.02562 * 26 24 22 44 44 H 1.09003 * 110.54800 * 122.81176 * 26 24 22 45 45 H 0.97000 * 125.41146 * 180.02562 * 27 26 24 46 46 H 0.97003 * 125.40371 * 179.97438 * 30 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4977 2.0464 -1.4000 5 1 1.4478 2.6526 0.7002 6 1 3.5478 1.4400 0.7000 7 6 2.0102 -1.2022 -0.0005 8 1 3.0724 -1.2126 0.1943 9 7 1.3480 -2.3750 -0.2481 10 6 0.1297 -2.4055 -1.0645 11 6 0.1972 -3.5584 -2.0342 12 6 -0.7444 -3.6035 -3.0535 13 6 -0.7454 -4.6430 -3.9605 14 6 0.2050 -5.6421 -3.8590 15 6 1.1464 -5.5936 -2.8525 16 6 1.1499 -4.5476 -1.9373 17 6 2.2241 -4.5468 -0.8819 18 6 1.8301 -3.6558 0.2949 19 1 1.0373 -4.1340 0.8703 20 6 3.0466 -3.4132 1.1905 21 7 2.7032 -2.4360 2.2266 22 6 3.6262 -2.0659 3.1363 23 8 4.7409 -2.5421 3.0974 24 6 3.2730 -1.0603 4.2017 25 1 2.2572 -1.2256 4.5607 26 6 3.4336 0.3753 3.6652 27 7 4.4655 0.9625 4.5330 28 6 4.8572 0.0490 5.4310 29 8 5.7049 0.2694 6.2742 30 7 4.2311 -1.1296 5.3151 31 1 -0.4850 0.8401 0.0004 32 1 0.0405 -1.4707 -1.6180 33 1 -0.7378 -2.5273 -0.4160 34 1 -1.4840 -2.8206 -3.1348 35 1 -1.4825 -4.6738 -4.7492 36 1 0.2100 -6.4585 -4.5662 37 1 1.8876 -6.3753 -2.7747 38 1 2.3767 -5.5654 -0.5250 39 1 3.1530 -4.1771 -1.3162 40 1 3.3450 -4.3506 1.6598 41 1 3.8704 -3.0299 0.5883 42 1 1.8115 -2.0555 2.2579 43 1 3.7684 0.3609 2.6280 44 1 2.4972 0.9254 3.7581 45 1 4.8075 1.8677 4.4662 46 1 4.3855 -1.9055 5.8765 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001054051352.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:42:51 Heat of formation + Delta-G solvation = 3.161108 kcal Electronic energy + Delta-G solvation = -30876.252657 eV Core-core repulsion = 26766.739999 eV Total energy + Delta-G solvation = -4109.512658 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.164 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.12961 -39.52878 -38.80281 -36.74216 -35.98135 -33.89960 -33.03916 -32.90526 -31.52651 -30.55248 -29.40491 -28.65765 -25.76168 -25.60211 -23.53678 -22.91191 -21.68425 -21.62635 -21.18635 -20.12532 -19.17088 -17.91344 -17.42150 -16.45268 -16.31634 -16.17053 -15.68639 -15.37426 -15.19378 -14.66972 -14.60309 -14.43351 -14.25515 -13.99889 -13.76278 -13.54739 -13.32908 -13.02305 -12.80112 -12.66735 -12.54942 -12.39467 -12.10871 -11.71383 -11.66235 -11.21010 -11.04030 -10.94801 -10.81529 -10.62487 -10.30723 -10.22533 -10.12531 -9.97709 -9.79578 -9.28778 -8.92392 -8.71047 -8.47763 -8.30712 -7.93446 -6.96728 -6.05957 -3.49863 1.79644 1.87168 2.69986 2.95164 3.14080 3.21101 3.24104 3.28295 3.55366 4.13637 4.21412 4.21761 4.43721 4.91603 4.95753 5.04346 5.10896 5.17986 5.29262 5.39781 5.45478 5.49385 5.59461 5.62459 5.76004 5.79868 5.85176 5.95543 5.96201 6.10544 6.20003 6.24306 6.47228 6.54361 6.69498 6.87219 6.88029 6.92709 7.03509 7.04649 7.09762 7.21429 7.40829 7.43133 7.54724 7.58011 8.01479 8.11809 8.59724 8.71206 8.92671 9.52764 10.11824 11.02637 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.015546 B = 0.003479 C = 0.002975 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1800.645366 B = 8045.437959 C = 9410.443570 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.008 3.992 3 Si 0.891 3.109 4 H -0.287 1.287 5 H -0.288 1.288 6 H -0.276 1.276 7 C -0.247 4.247 8 H 0.072 0.928 9 N -0.589 5.589 10 C 0.207 3.793 11 C -0.078 4.078 12 C -0.123 4.123 13 C -0.130 4.130 14 C -0.140 4.140 15 C -0.128 4.128 16 C -0.068 4.068 17 C -0.091 4.091 18 C 0.158 3.842 19 H 0.044 0.956 20 C 0.136 3.864 21 N -0.685 5.685 22 C 0.497 3.503 23 O -0.546 6.546 24 C 0.107 3.893 25 H 0.114 0.886 26 C 0.101 3.899 27 N -0.738 5.738 28 C 0.707 3.293 29 O -0.595 6.595 30 N -0.714 5.714 31 H 0.257 0.743 32 H 0.097 0.903 33 H 0.043 0.957 34 H 0.117 0.883 35 H 0.112 0.888 36 H 0.111 0.889 37 H 0.111 0.889 38 H 0.063 0.937 39 H 0.074 0.926 40 H 0.059 0.941 41 H 0.068 0.932 42 H 0.418 0.582 43 H 0.095 0.905 44 H 0.096 0.904 45 H 0.430 0.570 46 H 0.431 0.569 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.341 -5.580 0.067 6.051 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.191 4.191 3 Si 0.721 3.279 4 H -0.214 1.214 5 H -0.214 1.214 6 H -0.201 1.201 7 C -0.377 4.377 8 H 0.090 0.910 9 N -0.312 5.312 10 C 0.082 3.918 11 C -0.080 4.080 12 C -0.142 4.142 13 C -0.148 4.148 14 C -0.158 4.158 15 C -0.146 4.146 16 C -0.068 4.068 17 C -0.130 4.130 18 C 0.051 3.949 19 H 0.061 0.939 20 C 0.012 3.988 21 N -0.337 5.337 22 C 0.279 3.721 23 O -0.424 6.424 24 C -0.004 4.004 25 H 0.132 0.868 26 C -0.025 4.025 27 N -0.401 5.401 28 C 0.406 3.594 29 O -0.473 6.473 30 N -0.376 5.376 31 H 0.067 0.933 32 H 0.115 0.885 33 H 0.061 0.939 34 H 0.135 0.865 35 H 0.130 0.870 36 H 0.129 0.871 37 H 0.129 0.871 38 H 0.082 0.918 39 H 0.092 0.908 40 H 0.078 0.922 41 H 0.086 0.914 42 H 0.256 0.744 43 H 0.113 0.887 44 H 0.114 0.886 45 H 0.272 0.728 46 H 0.273 0.727 Dipole moment (debyes) X Y Z Total from point charges -1.250 -5.639 0.475 5.796 hybrid contribution -0.027 1.046 -0.411 1.125 sum -1.276 -4.593 0.064 4.768 Atomic orbital electron populations 1.69956 1.04993 1.25793 1.53835 1.25011 0.95292 0.97922 1.00856 0.86513 0.79072 0.83966 0.78375 1.21410 1.21404 1.20110 1.19132 0.91551 0.83400 1.43577 0.91024 1.44036 1.29087 1.01813 1.56275 1.19783 0.88632 0.93433 0.89919 1.20999 0.93314 0.97139 0.96516 1.21121 0.99273 0.98465 0.95327 1.20962 0.99163 0.95251 0.99447 1.20858 0.96675 0.99210 0.99039 1.21130 0.99105 0.98538 0.95793 1.19472 0.96521 0.94114 0.96724 1.20880 0.97011 0.99537 0.95582 1.20717 0.93860 0.88667 0.91653 0.93865 1.21280 0.97794 0.90948 0.88790 1.45915 1.16050 1.43263 1.28427 1.20524 0.85495 0.83000 0.83049 1.90697 1.21366 1.56034 1.74348 1.21810 0.95459 0.95320 0.87765 0.86831 1.22378 0.93310 0.90393 0.96413 1.45063 1.44188 1.15813 1.35024 1.15833 0.80768 0.81235 0.81537 1.90964 1.35481 1.81348 1.39547 1.44780 1.43335 1.14682 1.34788 0.93291 0.88545 0.93935 0.86463 0.86980 0.87111 0.87080 0.91842 0.90797 0.92247 0.91421 0.74359 0.88692 0.88566 0.72839 0.72689 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -21.29 11.07 55.49 0.61 -20.67 16 2 C 0.01 0.19 5.06 -17.43 -0.09 0.10 16 3 Si 0.89 18.32 29.53 -169.99 -5.02 13.30 16 4 H -0.29 -6.33 7.11 56.52 0.40 -5.92 16 5 H -0.29 -5.97 7.11 56.52 0.40 -5.57 16 6 H -0.28 -5.43 6.43 56.52 0.36 -5.07 16 7 C -0.25 -5.32 6.99 -15.06 -0.11 -5.42 16 8 H 0.07 1.59 6.15 -52.49 -0.32 1.27 16 9 N -0.59 -11.72 2.86 -166.39 -0.48 -12.19 16 10 C 0.21 4.22 4.81 -5.04 -0.02 4.19 16 11 C -0.08 -1.41 5.82 -104.56 -0.61 -2.02 16 12 C -0.12 -2.01 9.62 -39.46 -0.38 -2.39 16 13 C -0.13 -1.86 10.05 -39.67 -0.40 -2.26 16 14 C -0.14 -1.94 10.04 -39.69 -0.40 -2.33 16 15 C -0.13 -1.88 9.59 -39.43 -0.38 -2.25 16 16 C -0.07 -1.14 5.76 -104.60 -0.60 -1.74 16 17 C -0.09 -1.40 5.21 -28.05 -0.15 -1.55 16 18 C 0.16 2.64 3.02 -67.64 -0.20 2.44 16 19 H 0.04 0.73 8.14 -51.93 -0.42 0.30 16 20 C 0.14 2.18 4.45 -4.04 -0.02 2.16 16 21 N -0.69 -10.73 4.00 -60.29 -0.24 -10.97 16 22 C 0.50 7.90 6.93 -10.99 -0.08 7.83 16 23 O -0.55 -10.61 16.60 5.56 0.09 -10.52 16 24 C 0.11 1.40 4.17 -68.21 -0.28 1.11 16 25 H 0.11 1.15 8.14 -51.93 -0.42 0.73 16 26 C 0.10 1.34 7.70 -3.17 -0.02 1.32 16 27 N -0.74 -10.20 6.37 -64.70 -0.41 -10.61 16 28 C 0.71 11.56 8.92 -88.39 -0.79 10.77 16 29 O -0.59 -11.79 18.05 5.29 0.10 -11.70 16 30 N -0.71 -10.01 5.63 -59.33 -0.33 -10.35 16 31 H 0.26 6.05 8.31 -40.82 -0.34 5.71 16 32 H 0.10 2.23 6.43 -51.93 -0.33 1.89 16 33 H 0.04 0.92 8.14 -51.93 -0.42 0.50 16 34 H 0.12 1.79 8.05 -52.49 -0.42 1.36 16 35 H 0.11 1.32 8.06 -52.49 -0.42 0.89 16 36 H 0.11 1.24 8.06 -52.48 -0.42 0.82 16 37 H 0.11 1.39 8.05 -52.48 -0.42 0.96 16 38 H 0.06 0.83 8.11 -51.93 -0.42 0.41 16 39 H 0.07 1.19 8.01 -51.93 -0.42 0.77 16 40 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 41 H 0.07 1.21 7.31 -51.93 -0.38 0.83 16 42 H 0.42 6.70 7.34 -40.82 -0.30 6.40 16 43 H 0.09 1.46 7.01 -51.92 -0.36 1.09 16 44 H 0.10 1.09 8.14 -51.93 -0.42 0.67 16 45 H 0.43 5.07 8.96 -40.82 -0.37 4.71 16 46 H 0.43 5.42 8.96 -40.82 -0.37 5.06 16 LS Contribution 372.44 15.07 5.61 5.61 Total: -1.00 -29.04 372.44 -10.84 -39.88 By element: Atomic # 1 Polarization: 24.52 SS G_CDS: -6.25 Total: 18.27 kcal Atomic # 6 Polarization: 14.47 SS G_CDS: -4.53 Total: 9.95 kcal Atomic # 7 Polarization: -63.94 SS G_CDS: -0.85 Total: -64.79 kcal Atomic # 8 Polarization: -22.40 SS G_CDS: 0.19 Total: -22.21 kcal Atomic # 14 Polarization: 18.32 SS G_CDS: -5.02 Total: 13.30 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -29.04 -10.84 -39.88 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054051352.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.040 kcal (2) G-P(sol) polarization free energy of solvation -29.039 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.001 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.840 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.879 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.161 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds