Wall clock time and date at job start Wed Apr 1 2020 02:42:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86802 * 120.00255 * 2 1 4 4 H 1.48494 * 109.47204 * 270.00385 * 3 2 1 5 5 H 1.48501 * 109.46950 * 30.00776 * 3 2 1 6 6 H 1.48497 * 109.46881 * 150.00014 * 3 2 1 7 7 C 1.38814 * 119.99762 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99800 * 192.02672 * 7 2 1 9 9 N 1.36936 * 120.00053 * 12.02488 * 7 2 1 10 10 C 1.46687 * 121.33864 * 27.34113 * 9 7 2 11 11 C 1.50801 * 109.67085 * 135.56617 * 10 9 7 12 12 C 1.38841 * 117.80948 * 191.71803 * 11 10 9 13 13 C 1.37962 * 120.50520 * 180.89504 * 12 11 10 14 14 C 1.38268 * 119.71555 * 359.52824 * 13 12 11 15 15 C 1.37902 * 119.82867 * 0.03347 * 14 13 12 16 16 C 1.37675 * 122.34661 * 11.69740 * 11 10 9 17 17 C 1.50597 * 122.85622 * 358.37938 * 16 11 10 18 18 C 1.47236 * 121.33419 * 207.36715 * 9 7 2 19 19 H 1.09002 * 109.76820 * 124.56939 * 18 9 7 20 20 C 1.53001 * 109.77061 * 3.78152 * 18 9 7 21 21 N 1.46501 * 109.47160 * 55.00220 * 20 18 9 22 22 C 1.34777 * 120.00143 * 179.97438 * 21 20 18 23 23 O 1.21279 * 119.99712 * 359.97438 * 22 21 20 24 24 C 1.50700 * 119.99779 * 179.97438 * 22 21 20 25 25 H 1.08994 * 110.49028 * 38.75908 * 24 22 21 26 26 C 1.54096 * 110.55275 * 275.89287 * 24 22 21 27 27 N 1.47053 * 103.86892 * 241.41109 * 26 24 22 28 28 C 1.33950 * 109.17602 * 359.97438 * 27 26 24 29 29 O 1.21586 * 123.04080 * 179.97438 * 28 27 26 30 30 N 1.33956 * 113.91463 * 0.02562 * 28 27 26 31 31 H 0.97001 * 119.99717 * 359.97438 * 1 2 3 32 32 H 1.09005 * 109.43456 * 15.50455 * 10 9 7 33 33 H 1.08992 * 109.40571 * 255.61027 * 10 9 7 34 34 H 1.07998 * 119.74550 * 0.68199 * 12 11 10 35 35 H 1.07995 * 120.13980 * 179.80972 * 13 12 11 36 36 H 1.08003 * 120.08335 * 180.02562 * 14 13 12 37 37 H 1.08006 * 119.71207 * 179.97438 * 15 14 13 38 38 H 1.09003 * 109.19480 * 140.58948 * 17 16 11 39 39 H 1.08998 * 109.19761 * 259.87482 * 17 16 11 40 40 H 1.08998 * 109.46712 * 174.99819 * 20 18 9 41 41 H 1.08999 * 109.47177 * 295.00006 * 20 18 9 42 42 H 0.97004 * 119.99966 * 359.97438 * 21 20 18 43 43 H 1.09007 * 110.54939 * 0.02562 * 26 24 22 44 44 H 1.09003 * 110.54800 * 122.81176 * 26 24 22 45 45 H 0.97000 * 125.41146 * 180.02562 * 27 26 24 46 46 H 0.97003 * 125.40371 * 179.97438 * 30 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4977 2.0464 -1.4000 5 1 1.4478 2.6526 0.7002 6 1 3.5478 1.4400 0.7000 7 6 2.0102 -1.2022 -0.0005 8 1 3.0724 -1.2126 0.1943 9 7 1.3480 -2.3750 -0.2481 10 6 0.1297 -2.4055 -1.0645 11 6 0.1972 -3.5584 -2.0342 12 6 -0.7444 -3.6035 -3.0535 13 6 -0.7454 -4.6430 -3.9605 14 6 0.2050 -5.6421 -3.8590 15 6 1.1464 -5.5936 -2.8525 16 6 1.1499 -4.5476 -1.9373 17 6 2.2241 -4.5468 -0.8819 18 6 1.8301 -3.6558 0.2949 19 1 1.0373 -4.1340 0.8703 20 6 3.0466 -3.4132 1.1905 21 7 2.7032 -2.4360 2.2266 22 6 3.6262 -2.0659 3.1363 23 8 4.7409 -2.5421 3.0974 24 6 3.2730 -1.0603 4.2017 25 1 2.2572 -1.2256 4.5607 26 6 3.4336 0.3753 3.6652 27 7 4.4655 0.9625 4.5330 28 6 4.8572 0.0490 5.4310 29 8 5.7049 0.2694 6.2742 30 7 4.2311 -1.1296 5.3151 31 1 -0.4850 0.8401 0.0004 32 1 0.0405 -1.4707 -1.6180 33 1 -0.7378 -2.5273 -0.4160 34 1 -1.4840 -2.8206 -3.1348 35 1 -1.4825 -4.6738 -4.7492 36 1 0.2100 -6.4585 -4.5662 37 1 1.8876 -6.3753 -2.7747 38 1 2.3767 -5.5654 -0.5250 39 1 3.1530 -4.1771 -1.3162 40 1 3.3450 -4.3506 1.6598 41 1 3.8704 -3.0299 0.5883 42 1 1.8115 -2.0555 2.2579 43 1 3.7684 0.3609 2.6280 44 1 2.4972 0.9254 3.7581 45 1 4.8075 1.8677 4.4662 46 1 4.3855 -1.9055 5.8765 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001054051352.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:42:50 Heat of formation + Delta-G solvation = -17.346117 kcal Electronic energy + Delta-G solvation = -30877.141917 eV Core-core repulsion = 26766.739999 eV Total energy + Delta-G solvation = -4110.401918 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.164 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.33589 -40.82914 -40.10610 -38.10805 -37.31097 -35.32903 -34.47155 -34.05452 -32.92561 -31.87198 -30.76448 -29.89614 -27.30541 -26.87506 -24.73474 -24.40403 -22.87160 -22.86526 -22.47605 -21.41230 -20.55956 -19.19245 -18.67821 -17.84619 -17.72135 -17.38624 -17.00930 -16.60867 -16.48249 -16.10198 -15.98072 -15.72485 -15.58422 -15.23986 -15.02243 -14.97407 -14.67068 -14.48033 -14.07008 -13.88952 -13.77200 -13.65438 -13.37026 -13.13926 -12.98582 -12.71686 -12.55837 -12.42219 -12.19734 -12.10776 -11.78539 -11.58934 -11.56872 -11.34888 -11.17387 -10.59972 -10.56171 -9.85296 -9.84133 -9.51132 -9.22995 -8.61703 -7.78719 -5.22867 0.61179 0.65470 1.44838 1.49513 1.57660 1.59059 1.73523 1.99221 2.32400 2.53758 3.00146 3.02371 3.32109 3.39762 3.54725 3.74473 3.88634 3.97082 4.14422 4.26061 4.28076 4.33486 4.42860 4.46212 4.53063 4.58732 4.65622 4.73075 4.75578 4.86516 4.95880 4.96188 5.26053 5.26769 5.30503 5.47195 5.56743 5.61584 5.72956 5.76644 5.78965 5.88398 6.04890 6.18372 6.23162 6.30699 6.41768 6.71914 7.20807 7.30878 7.49935 7.87288 8.44299 9.28182 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.015546 B = 0.003479 C = 0.002975 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1800.645366 B = 8045.437959 C = 9410.443570 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C -0.025 4.025 3 Si 0.931 3.069 4 H -0.310 1.310 5 H -0.287 1.287 6 H -0.261 1.261 7 C -0.232 4.232 8 H 0.066 0.934 9 N -0.599 5.599 10 C 0.223 3.777 11 C -0.108 4.108 12 C -0.138 4.138 13 C -0.129 4.129 14 C -0.133 4.133 15 C -0.129 4.129 16 C -0.083 4.083 17 C -0.086 4.086 18 C 0.161 3.839 19 H 0.047 0.953 20 C 0.141 3.859 21 N -0.681 5.681 22 C 0.499 3.501 23 O -0.583 6.583 24 C 0.112 3.888 25 H 0.153 0.847 26 C 0.100 3.900 27 N -0.729 5.729 28 C 0.700 3.300 29 O -0.634 6.634 30 N -0.707 5.707 31 H 0.250 0.750 32 H 0.060 0.940 33 H 0.019 0.981 34 H 0.115 0.885 35 H 0.140 0.860 36 H 0.146 0.854 37 H 0.138 0.862 38 H 0.093 0.907 39 H 0.066 0.934 40 H 0.078 0.922 41 H 0.048 0.952 42 H 0.418 0.582 43 H 0.076 0.924 44 H 0.124 0.876 45 H 0.438 0.562 46 H 0.437 0.563 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.565 -7.467 -0.525 7.913 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.222 4.222 3 Si 0.761 3.239 4 H -0.239 1.239 5 H -0.214 1.214 6 H -0.186 1.186 7 C -0.362 4.362 8 H 0.084 0.916 9 N -0.322 5.322 10 C 0.098 3.902 11 C -0.109 4.109 12 C -0.156 4.156 13 C -0.147 4.147 14 C -0.151 4.151 15 C -0.147 4.147 16 C -0.083 4.083 17 C -0.125 4.125 18 C 0.054 3.946 19 H 0.065 0.935 20 C 0.017 3.983 21 N -0.331 5.331 22 C 0.283 3.717 23 O -0.464 6.464 24 C 0.002 3.998 25 H 0.170 0.830 26 C -0.026 4.026 27 N -0.392 5.392 28 C 0.399 3.601 29 O -0.517 6.517 30 N -0.368 5.368 31 H 0.059 0.941 32 H 0.078 0.922 33 H 0.036 0.964 34 H 0.133 0.867 35 H 0.158 0.842 36 H 0.163 0.837 37 H 0.156 0.844 38 H 0.112 0.888 39 H 0.085 0.915 40 H 0.096 0.904 41 H 0.066 0.934 42 H 0.256 0.744 43 H 0.094 0.906 44 H 0.142 0.858 45 H 0.281 0.719 46 H 0.280 0.720 Dipole moment (debyes) X Y Z Total from point charges -1.489 -7.546 -0.127 7.692 hybrid contribution 0.026 1.527 -0.360 1.569 sum -1.463 -6.019 -0.487 6.213 Atomic orbital electron populations 1.70074 1.05847 1.25483 1.55568 1.25371 0.95581 0.99550 1.01717 0.85875 0.79036 0.82018 0.76932 1.23907 1.21358 1.18609 1.19131 0.91163 0.84071 1.41797 0.91632 1.44166 1.28809 1.02596 1.56669 1.19344 0.88063 0.93067 0.89742 1.20827 0.95485 0.97290 0.97314 1.21244 0.99159 0.99496 0.95742 1.21299 0.99778 0.94364 0.99235 1.21310 0.95397 0.99516 0.98871 1.21439 0.99792 0.98291 0.95176 1.19668 0.96393 0.94505 0.97778 1.20841 0.96265 1.00743 0.94667 1.20822 0.94003 0.87347 0.92380 0.93477 1.21219 0.96688 0.91698 0.88676 1.45898 1.15964 1.43049 1.28224 1.20951 0.84723 0.82844 0.83203 1.90685 1.22790 1.57543 1.75339 1.21962 0.96937 0.94257 0.86621 0.82954 1.22471 0.94120 0.90826 0.95153 1.45042 1.43984 1.15930 1.34212 1.16047 0.80544 0.82027 0.81504 1.90931 1.37285 1.82161 1.41279 1.44763 1.43035 1.14293 1.34702 0.94085 0.92158 0.96374 0.86696 0.84184 0.83673 0.84387 0.88821 0.91515 0.90429 0.93393 0.74390 0.90594 0.85836 0.71854 0.71988 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -44.83 11.07 21.65 0.24 -44.59 16 2 C -0.03 -1.16 5.06 84.86 0.43 -0.73 16 3 Si 0.93 37.88 29.53 68.60 2.03 39.90 16 4 H -0.31 -13.78 7.11 99.48 0.71 -13.07 16 5 H -0.29 -11.61 7.11 99.48 0.71 -10.90 16 6 H -0.26 -9.91 6.43 99.48 0.64 -9.27 16 7 C -0.23 -10.06 6.99 84.03 0.59 -9.47 16 8 H 0.07 2.93 6.15 -2.91 -0.02 2.91 16 9 N -0.60 -24.10 2.86 -680.34 -1.94 -26.04 16 10 C 0.22 9.41 4.81 85.63 0.41 9.82 16 11 C -0.11 -3.90 5.82 -19.82 -0.12 -4.02 16 12 C -0.14 -4.44 9.62 22.35 0.22 -4.22 16 13 C -0.13 -3.35 10.05 22.21 0.22 -3.13 16 14 C -0.13 -3.18 10.04 22.20 0.22 -2.95 16 15 C -0.13 -3.37 9.59 22.37 0.21 -3.15 16 16 C -0.08 -2.65 5.76 -19.85 -0.11 -2.76 16 17 C -0.09 -2.51 5.21 29.74 0.15 -2.36 16 18 C 0.16 5.23 3.02 44.78 0.14 5.37 16 19 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 20 C 0.14 4.40 4.45 86.38 0.38 4.78 16 21 N -0.68 -20.64 4.00 -463.06 -1.85 -22.49 16 22 C 0.50 15.26 6.93 87.66 0.61 15.87 16 23 O -0.58 -22.22 16.60 -3.03 -0.05 -22.27 16 24 C 0.11 2.71 4.17 44.51 0.19 2.90 16 25 H 0.15 2.59 8.14 -2.39 -0.02 2.57 16 26 C 0.10 2.47 7.70 86.64 0.67 3.13 16 27 N -0.73 -19.16 6.37 -477.33 -3.04 -22.20 16 28 C 0.70 22.23 8.92 179.57 1.60 23.84 16 29 O -0.63 -25.06 18.05 -3.99 -0.07 -25.13 16 30 N -0.71 -18.83 5.63 -460.35 -2.59 -21.42 16 31 H 0.25 12.10 8.31 -92.71 -0.77 11.33 16 32 H 0.06 2.94 6.43 -2.38 -0.02 2.93 16 33 H 0.02 0.84 8.14 -2.39 -0.02 0.82 16 34 H 0.11 3.60 8.05 -2.91 -0.02 3.58 16 35 H 0.14 2.81 8.06 -2.91 -0.02 2.78 16 36 H 0.15 2.48 8.06 -2.91 -0.02 2.46 16 37 H 0.14 2.83 8.05 -2.91 -0.02 2.80 16 38 H 0.09 2.16 8.11 -2.39 -0.02 2.14 16 39 H 0.07 2.05 8.01 -2.39 -0.02 2.03 16 40 H 0.08 2.15 8.14 -2.39 -0.02 2.13 16 41 H 0.05 1.70 7.31 -2.39 -0.02 1.68 16 42 H 0.42 12.96 7.34 -92.71 -0.68 12.28 16 43 H 0.08 2.23 7.01 -2.38 -0.02 2.21 16 44 H 0.12 2.45 8.14 -2.39 -0.02 2.43 16 45 H 0.44 9.82 8.96 -92.71 -0.83 8.99 16 46 H 0.44 10.47 8.96 -92.71 -0.83 9.64 16 Total: -1.00 -64.53 372.44 -2.83 -67.36 By element: Atomic # 1 Polarization: 45.33 SS G_CDS: -1.36 Total: 43.97 kcal Atomic # 6 Polarization: 27.10 SS G_CDS: 5.81 Total: 32.91 kcal Atomic # 7 Polarization: -127.56 SS G_CDS: -9.19 Total: -136.75 kcal Atomic # 8 Polarization: -47.28 SS G_CDS: -0.12 Total: -47.40 kcal Atomic # 14 Polarization: 37.88 SS G_CDS: 2.03 Total: 39.90 kcal Total: -64.53 -2.83 -67.36 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054051352.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.015 kcal (2) G-P(sol) polarization free energy of solvation -64.529 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.515 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.831 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.361 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.346 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds