Wall clock time and date at job start Wed Apr 1 2020 02:42:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31610 * 1 3 3 Si 1.86809 * 119.99841 * 2 1 4 4 H 1.48495 * 109.47279 * 270.00090 * 3 2 1 5 5 H 1.48496 * 109.46887 * 30.00429 * 3 2 1 6 6 H 1.48504 * 109.47079 * 149.99962 * 3 2 1 7 7 C 1.38809 * 120.00159 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99656 * 169.02364 * 7 2 1 9 9 N 1.36931 * 120.00147 * 349.02780 * 7 2 1 10 10 C 1.46696 * 121.34593 * 332.07179 * 9 7 2 11 11 C 1.50811 * 109.67517 * 224.32631 * 10 9 7 12 12 C 1.38839 * 117.79918 * 169.07672 * 11 10 9 13 13 C 1.37778 * 120.54855 * 179.46084 * 12 11 10 14 14 C 1.38266 * 119.70598 * 0.06914 * 13 12 11 15 15 C 1.37908 * 119.82014 * 0.13062 * 14 13 12 16 16 C 1.37605 * 122.34044 * 348.91912 * 11 10 9 17 17 C 1.50608 * 122.91477 * 0.82347 * 16 11 10 18 18 C 1.47235 * 121.35070 * 152.10452 * 9 7 2 19 19 H 1.09007 * 109.77248 * 235.22471 * 18 9 7 20 20 C 1.52996 * 109.78201 * 356.02725 * 18 9 7 21 21 N 1.46493 * 109.47279 * 303.43960 * 20 18 9 22 22 C 1.34779 * 120.00233 * 179.97438 * 21 20 18 23 23 O 1.21280 * 119.99855 * 359.97438 * 22 21 20 24 24 C 1.50701 * 120.00109 * 180.02562 * 22 21 20 25 25 H 1.09000 * 110.49468 * 40.70024 * 24 22 21 26 26 C 1.54110 * 110.54678 * 277.99688 * 24 22 21 27 27 N 1.47047 * 103.86410 * 241.40547 * 26 24 22 28 28 C 1.33958 * 109.17935 * 0.02562 * 27 26 24 29 29 O 1.21584 * 123.04063 * 180.02562 * 28 27 26 30 30 N 1.34255 * 113.95784 * 359.91710 * 28 27 26 31 31 H 0.97000 * 120.00252 * 359.97438 * 1 2 3 32 32 H 1.08996 * 109.43298 * 344.39029 * 10 9 7 33 33 H 1.09001 * 109.42886 * 104.30599 * 10 9 7 34 34 H 1.07997 * 119.74714 * 359.55612 * 12 11 10 35 35 H 1.08004 * 120.15619 * 179.97438 * 13 12 11 36 36 H 1.07997 * 120.08689 * 180.10669 * 14 13 12 37 37 H 1.07996 * 119.70429 * 179.97438 * 15 14 13 38 38 H 1.09006 * 109.19737 * 219.87734 * 17 16 11 39 39 H 1.08998 * 109.20360 * 100.53683 * 17 16 11 40 40 H 1.09005 * 109.46687 * 63.43129 * 20 18 9 41 41 H 1.09002 * 109.47709 * 183.43084 * 20 18 9 42 42 H 0.97006 * 120.00229 * 359.97438 * 21 20 18 43 43 H 1.09000 * 110.54678 * 0.02562 * 26 24 22 44 44 H 1.09002 * 110.54419 * 122.81214 * 26 24 22 45 45 H 0.96995 * 125.41494 * 179.97438 * 27 26 24 46 46 H 0.97005 * 125.57607 * 180.02562 * 30 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0466 -1.4000 5 1 1.4475 2.6527 0.7001 6 1 3.5477 1.4403 0.7001 7 6 2.0102 -1.2021 -0.0005 8 1 3.0754 -1.2105 -0.1786 9 7 1.3444 -2.3773 0.2246 10 6 0.1201 -2.4182 1.0318 11 6 0.1777 -3.5873 1.9827 12 6 -0.7817 -3.6555 2.9839 13 6 -0.7888 -4.7048 3.8768 14 6 0.1685 -5.6972 3.7753 15 6 1.1247 -5.6289 2.7839 16 6 1.1355 -4.5703 1.8836 17 6 2.2161 -4.5572 0.8346 18 6 1.8286 -3.6510 -0.3330 19 1 1.0384 -4.1213 -0.9184 20 6 3.0497 -3.3975 -1.2191 21 7 2.7015 -2.4345 -2.2666 22 6 3.6277 -2.0572 -3.1701 23 8 4.7496 -2.5146 -3.1156 24 6 3.2695 -1.0661 -4.2475 25 1 2.6435 -0.2713 -3.8420 26 6 2.5569 -1.7726 -5.4171 27 7 3.4458 -1.5379 -6.5647 28 6 4.5035 -0.8209 -6.1627 29 8 5.3991 -0.4832 -6.9124 30 7 4.4848 -0.5065 -4.8576 31 1 -0.4850 0.8400 0.0004 32 1 0.0293 -1.4925 1.6001 33 1 -0.7434 -2.5272 0.3756 34 1 -1.5298 -2.8805 3.0630 35 1 -1.5379 -4.7513 4.6535 36 1 0.1677 -6.5234 4.4708 37 1 1.8719 -6.4049 2.7067 38 1 2.3697 -5.5714 0.4656 39 1 3.1426 -4.1932 1.2787 40 1 3.8618 -2.9965 -0.6124 41 1 3.3670 -4.3342 -1.6774 42 1 1.8042 -2.0683 -2.3101 43 1 2.4617 -2.8401 -5.2184 44 1 1.5780 -1.3268 -5.5939 45 1 3.2913 -1.8529 -7.4690 46 1 5.1634 0.0060 -4.3908 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001054051353.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:42:54 Heat of formation + Delta-G solvation = 2.016672 kcal Electronic energy + Delta-G solvation = -30635.612351 eV Core-core repulsion = 26526.050067 eV Total energy + Delta-G solvation = -4109.562284 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.164 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.16452 -39.52974 -38.81803 -36.74383 -36.03391 -33.91757 -33.01580 -32.94787 -31.52013 -30.56174 -29.41876 -28.68241 -25.77409 -25.57889 -23.59043 -22.91922 -21.73756 -21.62390 -21.16866 -20.14168 -19.15870 -17.96388 -17.41559 -16.47589 -16.34608 -16.21553 -15.65550 -15.41247 -15.20475 -14.70064 -14.64591 -14.43890 -14.20362 -13.96813 -13.82935 -13.69780 -13.23663 -13.08503 -12.83196 -12.67956 -12.53948 -12.48292 -12.02099 -11.74412 -11.65539 -11.21805 -11.00468 -10.94129 -10.80171 -10.62102 -10.29304 -10.27782 -10.11366 -9.98412 -9.77975 -9.38196 -8.89773 -8.76390 -8.49168 -8.30655 -7.92769 -6.93624 -6.03549 -3.48075 1.80497 1.87722 2.65375 2.95127 3.11981 3.19024 3.30580 3.33642 3.52646 4.07179 4.22309 4.26067 4.32705 4.85441 4.97034 5.04812 5.12492 5.18788 5.23495 5.29943 5.40303 5.48209 5.50997 5.62724 5.63793 5.79538 5.85786 5.95320 5.96817 6.11457 6.20435 6.24783 6.47880 6.54978 6.69955 6.87951 6.88939 6.92013 6.96818 7.05769 7.10540 7.17172 7.37382 7.41990 7.56045 7.60745 7.99974 8.14462 8.57667 8.66050 8.95477 9.55331 10.14049 11.05126 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.013869 B = 0.003364 C = 0.002914 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2018.419988 B = 8320.697789 C = 9606.240734 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.009 3.991 3 Si 0.896 3.104 4 H -0.285 1.285 5 H -0.289 1.289 6 H -0.280 1.280 7 C -0.247 4.247 8 H 0.071 0.929 9 N -0.588 5.588 10 C 0.208 3.792 11 C -0.078 4.078 12 C -0.123 4.123 13 C -0.130 4.130 14 C -0.140 4.140 15 C -0.127 4.127 16 C -0.068 4.068 17 C -0.091 4.091 18 C 0.158 3.842 19 H 0.043 0.957 20 C 0.136 3.864 21 N -0.686 5.686 22 C 0.498 3.502 23 O -0.546 6.546 24 C 0.101 3.899 25 H 0.120 0.880 26 C 0.107 3.893 27 N -0.740 5.740 28 C 0.707 3.293 29 O -0.592 6.592 30 N -0.713 5.713 31 H 0.257 0.743 32 H 0.097 0.903 33 H 0.043 0.957 34 H 0.117 0.883 35 H 0.112 0.888 36 H 0.111 0.889 37 H 0.111 0.889 38 H 0.063 0.937 39 H 0.074 0.926 40 H 0.068 0.932 41 H 0.059 0.941 42 H 0.417 0.583 43 H 0.086 0.914 44 H 0.096 0.904 45 H 0.430 0.570 46 H 0.434 0.566 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.114 -7.491 -1.784 8.307 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.190 4.190 3 Si 0.725 3.275 4 H -0.212 1.212 5 H -0.215 1.215 6 H -0.205 1.205 7 C -0.376 4.376 8 H 0.089 0.911 9 N -0.312 5.312 10 C 0.083 3.917 11 C -0.080 4.080 12 C -0.142 4.142 13 C -0.148 4.148 14 C -0.158 4.158 15 C -0.146 4.146 16 C -0.068 4.068 17 C -0.130 4.130 18 C 0.051 3.949 19 H 0.061 0.939 20 C 0.012 3.988 21 N -0.337 5.337 22 C 0.281 3.719 23 O -0.424 6.424 24 C -0.010 4.010 25 H 0.138 0.862 26 C -0.019 4.019 27 N -0.403 5.403 28 C 0.406 3.594 29 O -0.471 6.471 30 N -0.374 5.374 31 H 0.067 0.933 32 H 0.114 0.886 33 H 0.060 0.940 34 H 0.135 0.865 35 H 0.130 0.870 36 H 0.129 0.871 37 H 0.129 0.871 38 H 0.082 0.918 39 H 0.092 0.908 40 H 0.087 0.913 41 H 0.077 0.923 42 H 0.255 0.745 43 H 0.104 0.896 44 H 0.114 0.886 45 H 0.272 0.728 46 H 0.276 0.724 Dipole moment (debyes) X Y Z Total from point charges -1.979 -7.466 -2.114 8.008 hybrid contribution -0.007 1.083 0.379 1.148 sum -1.986 -6.383 -1.735 6.906 Atomic orbital electron populations 1.69944 1.05034 1.25818 1.53952 1.25022 0.95319 0.98009 1.00676 0.86402 0.79333 0.83798 0.77926 1.21219 1.21502 1.20504 1.19094 0.91286 0.83228 1.44033 0.91131 1.44031 1.28500 1.02153 1.56499 1.19786 0.88554 0.93101 0.90299 1.20991 0.93202 0.97262 0.96516 1.21074 0.99177 0.98401 0.95530 1.20919 0.99142 0.95236 0.99512 1.20859 0.96549 0.99234 0.99168 1.21130 0.98990 0.98416 0.96023 1.19454 0.96516 0.94055 0.96802 1.20886 0.96993 0.99483 0.95669 1.20717 0.93802 0.88714 0.91659 0.93897 1.21284 0.97792 0.91151 0.88574 1.45867 1.15367 1.44365 1.28067 1.20500 0.85675 0.82813 0.82955 1.90699 1.21055 1.56113 1.74515 1.21895 0.88143 0.96996 0.93934 0.86228 1.22255 0.94401 1.01540 0.83737 1.45020 1.23922 1.59224 1.12117 1.15920 0.82283 0.78588 0.82648 1.90970 1.38605 1.61025 1.56461 1.44871 1.25628 1.58489 1.08448 0.93326 0.88551 0.93959 0.86479 0.86985 0.87117 0.87089 0.91840 0.90804 0.91322 0.92290 0.74526 0.89566 0.88625 0.72848 0.72400 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -21.86 11.06 55.49 0.61 -21.25 16 2 C 0.01 0.21 5.08 -17.44 -0.09 0.12 16 3 Si 0.90 19.30 29.57 -169.99 -5.03 14.27 16 4 H -0.29 -6.02 7.11 56.52 0.40 -5.62 16 5 H -0.29 -6.47 7.11 56.52 0.40 -6.06 16 6 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 7 C -0.25 -5.47 7.09 -15.06 -0.11 -5.58 16 8 H 0.07 1.62 6.18 -52.48 -0.32 1.30 16 9 N -0.59 -11.87 2.86 -166.37 -0.48 -12.35 16 10 C 0.21 4.26 4.80 -5.03 -0.02 4.24 16 11 C -0.08 -1.42 5.82 -104.58 -0.61 -2.03 16 12 C -0.12 -2.01 9.61 -39.53 -0.38 -2.39 16 13 C -0.13 -1.86 10.05 -39.74 -0.40 -2.26 16 14 C -0.14 -1.94 10.05 -39.69 -0.40 -2.34 16 15 C -0.13 -1.88 9.59 -39.43 -0.38 -2.26 16 16 C -0.07 -1.14 5.76 -104.62 -0.60 -1.74 16 17 C -0.09 -1.41 5.21 -28.04 -0.15 -1.56 16 18 C 0.16 2.65 2.99 -67.64 -0.20 2.45 16 19 H 0.04 0.72 8.14 -51.93 -0.42 0.29 16 20 C 0.14 2.18 4.43 -4.05 -0.02 2.16 16 21 N -0.69 -10.65 4.08 -60.30 -0.25 -10.90 16 22 C 0.50 7.84 6.94 -10.98 -0.08 7.77 16 23 O -0.55 -10.52 16.58 5.56 0.09 -10.43 16 24 C 0.10 1.30 4.16 -68.20 -0.28 1.02 16 25 H 0.12 1.44 8.14 -51.93 -0.42 1.02 16 26 C 0.11 1.06 7.70 -3.16 -0.02 1.04 16 27 N -0.74 -8.50 6.37 -64.62 -0.41 -8.91 16 28 C 0.71 11.03 8.92 -88.12 -0.79 10.24 16 29 O -0.59 -11.48 18.05 5.29 0.10 -11.38 16 30 N -0.71 -10.34 5.64 -59.24 -0.33 -10.68 16 31 H 0.26 6.19 8.31 -40.82 -0.34 5.85 16 32 H 0.10 2.25 6.45 -51.93 -0.34 1.92 16 33 H 0.04 0.92 8.14 -51.93 -0.42 0.50 16 34 H 0.12 1.79 8.05 -52.49 -0.42 1.37 16 35 H 0.11 1.32 8.06 -52.48 -0.42 0.90 16 36 H 0.11 1.25 8.06 -52.49 -0.42 0.82 16 37 H 0.11 1.39 8.05 -52.49 -0.42 0.97 16 38 H 0.06 0.83 8.11 -51.93 -0.42 0.41 16 39 H 0.07 1.19 8.03 -51.93 -0.42 0.78 16 40 H 0.07 1.24 7.25 -51.93 -0.38 0.86 16 41 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 42 H 0.42 6.60 7.49 -40.82 -0.31 6.30 16 43 H 0.09 0.80 7.72 -51.93 -0.40 0.40 16 44 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 45 H 0.43 3.89 8.96 -40.82 -0.37 3.53 16 46 H 0.43 6.13 8.96 -40.82 -0.37 5.76 16 LS Contribution 374.13 15.07 5.64 5.64 Total: -1.00 -30.09 374.13 -10.83 -40.92 By element: Atomic # 1 Polarization: 22.45 SS G_CDS: -6.25 Total: 16.20 kcal Atomic # 6 Polarization: 13.39 SS G_CDS: -4.52 Total: 8.86 kcal Atomic # 7 Polarization: -63.23 SS G_CDS: -0.85 Total: -64.08 kcal Atomic # 8 Polarization: -22.00 SS G_CDS: 0.19 Total: -21.81 kcal Atomic # 14 Polarization: 19.30 SS G_CDS: -5.03 Total: 14.27 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -30.09 -10.83 -40.92 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054051353.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.941 kcal (2) G-P(sol) polarization free energy of solvation -30.094 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.847 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.830 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.925 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.017 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds