Wall clock time and date at job start Wed Apr 1 2020 02:42:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31610 * 1 3 3 Si 1.86809 * 119.99841 * 2 1 4 4 H 1.48495 * 109.47279 * 270.00090 * 3 2 1 5 5 H 1.48496 * 109.46887 * 30.00429 * 3 2 1 6 6 H 1.48504 * 109.47079 * 149.99962 * 3 2 1 7 7 C 1.38809 * 120.00159 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99656 * 169.02364 * 7 2 1 9 9 N 1.36931 * 120.00147 * 349.02780 * 7 2 1 10 10 C 1.46696 * 121.34593 * 332.07179 * 9 7 2 11 11 C 1.50811 * 109.67517 * 224.32631 * 10 9 7 12 12 C 1.38839 * 117.79918 * 169.07672 * 11 10 9 13 13 C 1.37778 * 120.54855 * 179.46084 * 12 11 10 14 14 C 1.38266 * 119.70598 * 0.06914 * 13 12 11 15 15 C 1.37908 * 119.82014 * 0.13062 * 14 13 12 16 16 C 1.37605 * 122.34044 * 348.91912 * 11 10 9 17 17 C 1.50608 * 122.91477 * 0.82347 * 16 11 10 18 18 C 1.47235 * 121.35070 * 152.10452 * 9 7 2 19 19 H 1.09007 * 109.77248 * 235.22471 * 18 9 7 20 20 C 1.52996 * 109.78201 * 356.02725 * 18 9 7 21 21 N 1.46493 * 109.47279 * 303.43960 * 20 18 9 22 22 C 1.34779 * 120.00233 * 179.97438 * 21 20 18 23 23 O 1.21280 * 119.99855 * 359.97438 * 22 21 20 24 24 C 1.50701 * 120.00109 * 180.02562 * 22 21 20 25 25 H 1.09000 * 110.49468 * 40.70024 * 24 22 21 26 26 C 1.54110 * 110.54678 * 277.99688 * 24 22 21 27 27 N 1.47047 * 103.86410 * 241.40547 * 26 24 22 28 28 C 1.33958 * 109.17935 * 0.02562 * 27 26 24 29 29 O 1.21584 * 123.04063 * 180.02562 * 28 27 26 30 30 N 1.34255 * 113.95784 * 359.91710 * 28 27 26 31 31 H 0.97000 * 120.00252 * 359.97438 * 1 2 3 32 32 H 1.08996 * 109.43298 * 344.39029 * 10 9 7 33 33 H 1.09001 * 109.42886 * 104.30599 * 10 9 7 34 34 H 1.07997 * 119.74714 * 359.55612 * 12 11 10 35 35 H 1.08004 * 120.15619 * 179.97438 * 13 12 11 36 36 H 1.07997 * 120.08689 * 180.10669 * 14 13 12 37 37 H 1.07996 * 119.70429 * 179.97438 * 15 14 13 38 38 H 1.09006 * 109.19737 * 219.87734 * 17 16 11 39 39 H 1.08998 * 109.20360 * 100.53683 * 17 16 11 40 40 H 1.09005 * 109.46687 * 63.43129 * 20 18 9 41 41 H 1.09002 * 109.47709 * 183.43084 * 20 18 9 42 42 H 0.97006 * 120.00229 * 359.97438 * 21 20 18 43 43 H 1.09000 * 110.54678 * 0.02562 * 26 24 22 44 44 H 1.09002 * 110.54419 * 122.81214 * 26 24 22 45 45 H 0.96995 * 125.41494 * 179.97438 * 27 26 24 46 46 H 0.97005 * 125.57607 * 180.02562 * 30 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0466 -1.4000 5 1 1.4475 2.6527 0.7001 6 1 3.5477 1.4403 0.7001 7 6 2.0102 -1.2021 -0.0005 8 1 3.0754 -1.2105 -0.1786 9 7 1.3444 -2.3773 0.2246 10 6 0.1201 -2.4182 1.0318 11 6 0.1777 -3.5873 1.9827 12 6 -0.7817 -3.6555 2.9839 13 6 -0.7888 -4.7048 3.8768 14 6 0.1685 -5.6972 3.7753 15 6 1.1247 -5.6289 2.7839 16 6 1.1355 -4.5703 1.8836 17 6 2.2161 -4.5572 0.8346 18 6 1.8286 -3.6510 -0.3330 19 1 1.0384 -4.1213 -0.9184 20 6 3.0497 -3.3975 -1.2191 21 7 2.7015 -2.4345 -2.2666 22 6 3.6277 -2.0572 -3.1701 23 8 4.7496 -2.5146 -3.1156 24 6 3.2695 -1.0661 -4.2475 25 1 2.6435 -0.2713 -3.8420 26 6 2.5569 -1.7726 -5.4171 27 7 3.4458 -1.5379 -6.5647 28 6 4.5035 -0.8209 -6.1627 29 8 5.3991 -0.4832 -6.9124 30 7 4.4848 -0.5065 -4.8576 31 1 -0.4850 0.8400 0.0004 32 1 0.0293 -1.4925 1.6001 33 1 -0.7434 -2.5272 0.3756 34 1 -1.5298 -2.8805 3.0630 35 1 -1.5379 -4.7513 4.6535 36 1 0.1677 -6.5234 4.4708 37 1 1.8719 -6.4049 2.7067 38 1 2.3697 -5.5714 0.4656 39 1 3.1426 -4.1932 1.2787 40 1 3.8618 -2.9965 -0.6124 41 1 3.3670 -4.3342 -1.6774 42 1 1.8042 -2.0683 -2.3101 43 1 2.4617 -2.8401 -5.2184 44 1 1.5780 -1.3268 -5.5939 45 1 3.2913 -1.8529 -7.4690 46 1 5.1634 0.0060 -4.3908 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001054051353.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:42:53 Heat of formation + Delta-G solvation = -19.648134 kcal Electronic energy + Delta-G solvation = -30636.551808 eV Core-core repulsion = 26526.050067 eV Total energy + Delta-G solvation = -4110.501741 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.164 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -42.29323 -40.82892 -40.10121 -38.10959 -37.29519 -35.35127 -34.46932 -34.00766 -32.93644 -31.88295 -30.75891 -29.87853 -27.32021 -26.84041 -24.67873 -24.43724 -22.86671 -22.84097 -22.46031 -21.40877 -20.56193 -19.17437 -18.63290 -17.92405 -17.66753 -17.39097 -16.96193 -16.65958 -16.44078 -16.05477 -15.99083 -15.83101 -15.45607 -15.27586 -15.04710 -14.97855 -14.56104 -14.54243 -14.01295 -13.89356 -13.75513 -13.68256 -13.23699 -13.17283 -13.01791 -12.70113 -12.58453 -12.49755 -12.24043 -12.12780 -11.83680 -11.58993 -11.56899 -11.34516 -11.16757 -10.61189 -10.54288 -9.84952 -9.82376 -9.51238 -9.23035 -8.61956 -7.82166 -5.25867 0.61823 0.65722 1.43043 1.49120 1.53044 1.56481 1.80593 1.96641 2.34022 2.51373 3.01166 3.04883 3.34023 3.37319 3.54399 3.74806 3.88646 4.01824 4.14506 4.26332 4.28570 4.36899 4.43172 4.46933 4.54214 4.65140 4.69352 4.72921 4.76180 4.86969 4.95882 4.96456 5.26233 5.27166 5.30494 5.47130 5.56916 5.61636 5.73207 5.75578 5.78309 5.87790 6.05147 6.20952 6.26637 6.30945 6.40202 6.71824 7.19301 7.30986 7.51059 7.85696 8.42113 9.24702 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.013869 B = 0.003364 C = 0.002914 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2018.419988 B = 8320.697789 C = 9606.240734 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C -0.026 4.026 3 Si 0.935 3.065 4 H -0.275 1.275 5 H -0.302 1.302 6 H -0.291 1.291 7 C -0.230 4.230 8 H 0.063 0.937 9 N -0.598 5.598 10 C 0.223 3.777 11 C -0.108 4.108 12 C -0.138 4.138 13 C -0.129 4.129 14 C -0.133 4.133 15 C -0.129 4.129 16 C -0.083 4.083 17 C -0.086 4.086 18 C 0.161 3.839 19 H 0.050 0.950 20 C 0.142 3.858 21 N -0.682 5.682 22 C 0.500 3.500 23 O -0.583 6.583 24 C 0.101 3.899 25 H 0.133 0.867 26 C 0.111 3.889 27 N -0.724 5.724 28 C 0.698 3.302 29 O -0.637 6.637 30 N -0.716 5.716 31 H 0.249 0.751 32 H 0.059 0.941 33 H 0.020 0.980 34 H 0.115 0.885 35 H 0.140 0.860 36 H 0.146 0.854 37 H 0.138 0.862 38 H 0.095 0.905 39 H 0.065 0.935 40 H 0.046 0.954 41 H 0.079 0.921 42 H 0.417 0.583 43 H 0.099 0.901 44 H 0.133 0.867 45 H 0.442 0.558 46 H 0.432 0.568 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.752 -9.867 -1.360 10.644 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.223 4.223 3 Si 0.765 3.235 4 H -0.201 1.201 5 H -0.229 1.229 6 H -0.217 1.217 7 C -0.360 4.360 8 H 0.081 0.919 9 N -0.322 5.322 10 C 0.098 3.902 11 C -0.109 4.109 12 C -0.156 4.156 13 C -0.146 4.146 14 C -0.151 4.151 15 C -0.147 4.147 16 C -0.083 4.083 17 C -0.126 4.126 18 C 0.055 3.945 19 H 0.068 0.932 20 C 0.017 3.983 21 N -0.332 5.332 22 C 0.284 3.716 23 O -0.464 6.464 24 C -0.009 4.009 25 H 0.150 0.850 26 C -0.014 4.014 27 N -0.387 5.387 28 C 0.397 3.603 29 O -0.519 6.519 30 N -0.376 5.376 31 H 0.059 0.941 32 H 0.077 0.923 33 H 0.037 0.963 34 H 0.133 0.867 35 H 0.158 0.842 36 H 0.163 0.837 37 H 0.156 0.844 38 H 0.113 0.887 39 H 0.084 0.916 40 H 0.064 0.936 41 H 0.097 0.903 42 H 0.255 0.745 43 H 0.117 0.883 44 H 0.151 0.849 45 H 0.286 0.714 46 H 0.273 0.727 Dipole moment (debyes) X Y Z Total from point charges -2.658 -9.880 -1.693 10.370 hybrid contribution 0.180 1.712 0.374 1.762 sum -2.478 -8.167 -1.319 8.636 Atomic orbital electron populations 1.70053 1.05707 1.25430 1.55763 1.25359 0.95617 0.99493 1.01792 0.85791 0.77703 0.81943 0.78022 1.20082 1.22912 1.21673 1.19067 0.90850 0.84017 1.42044 0.91920 1.44150 1.28220 1.02877 1.56968 1.19347 0.87975 0.92823 0.90056 1.20803 0.95395 0.97319 0.97404 1.21193 0.99024 0.99452 0.95946 1.21256 0.99810 0.94323 0.99251 1.21313 0.95274 0.99579 0.98918 1.21439 0.99712 0.98138 0.95387 1.19649 0.96366 0.94467 0.97844 1.20850 0.96208 1.00713 0.94781 1.20837 0.94019 0.87284 0.92380 0.93196 1.21215 0.96637 0.91941 0.88467 1.45848 1.15316 1.44187 1.27828 1.20947 0.84898 0.82594 0.83128 1.90684 1.22509 1.57618 1.75542 1.22041 0.87845 0.96784 0.94250 0.84954 1.22490 0.94966 1.02356 0.81587 1.44963 1.22829 1.57770 1.13170 1.16172 0.82650 0.78889 0.82617 1.90930 1.40526 1.62908 1.57559 1.44943 1.26123 1.58207 1.08358 0.94096 0.92276 0.96278 0.86717 0.84172 0.83660 0.84375 0.88698 0.91627 0.93556 0.90337 0.74523 0.88290 0.84916 0.71385 0.72665 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -45.99 11.06 21.65 0.24 -45.75 16 2 C -0.03 -1.23 5.08 84.86 0.43 -0.80 16 3 Si 0.93 40.22 29.57 68.60 2.03 42.25 16 4 H -0.27 -11.22 7.11 99.48 0.71 -10.51 16 5 H -0.30 -13.59 7.11 99.48 0.71 -12.88 16 6 H -0.29 -12.89 7.11 99.48 0.71 -12.19 16 7 C -0.23 -10.30 7.09 84.03 0.60 -9.71 16 8 H 0.06 2.91 6.18 -2.91 -0.02 2.89 16 9 N -0.60 -24.41 2.86 -680.28 -1.95 -26.36 16 10 C 0.22 9.48 4.80 85.63 0.41 9.90 16 11 C -0.11 -3.91 5.82 -19.83 -0.12 -4.03 16 12 C -0.14 -4.43 9.61 22.30 0.21 -4.22 16 13 C -0.13 -3.34 10.05 22.17 0.22 -3.11 16 14 C -0.13 -3.16 10.05 22.20 0.22 -2.94 16 15 C -0.13 -3.35 9.59 22.37 0.21 -3.14 16 16 C -0.08 -2.64 5.76 -19.87 -0.11 -2.76 16 17 C -0.09 -2.52 5.21 29.75 0.16 -2.37 16 18 C 0.16 5.23 2.99 44.78 0.13 5.37 16 19 H 0.05 1.59 8.14 -2.38 -0.02 1.57 16 20 C 0.14 4.41 4.43 86.38 0.38 4.79 16 21 N -0.68 -20.56 4.08 -463.07 -1.89 -22.45 16 22 C 0.50 15.29 6.94 87.66 0.61 15.90 16 23 O -0.58 -22.26 16.58 -3.03 -0.05 -22.31 16 24 C 0.10 2.45 4.16 44.52 0.19 2.64 16 25 H 0.13 2.94 8.14 -2.39 -0.02 2.92 16 26 C 0.11 1.89 7.70 86.65 0.67 2.56 16 27 N -0.72 -15.22 6.37 -477.07 -3.04 -18.26 16 28 C 0.70 21.33 8.92 179.47 1.60 22.93 16 29 O -0.64 -24.87 18.05 -3.98 -0.07 -24.94 16 30 N -0.72 -20.39 5.64 -459.90 -2.59 -22.98 16 31 H 0.25 12.41 8.31 -92.71 -0.77 11.64 16 32 H 0.06 2.91 6.45 -2.39 -0.02 2.90 16 33 H 0.02 0.88 8.14 -2.39 -0.02 0.86 16 34 H 0.11 3.60 8.05 -2.91 -0.02 3.58 16 35 H 0.14 2.80 8.06 -2.91 -0.02 2.78 16 36 H 0.15 2.47 8.06 -2.91 -0.02 2.45 16 37 H 0.14 2.82 8.05 -2.91 -0.02 2.79 16 38 H 0.09 2.17 8.11 -2.38 -0.02 2.15 16 39 H 0.07 2.03 8.03 -2.39 -0.02 2.01 16 40 H 0.05 1.66 7.25 -2.38 -0.02 1.65 16 41 H 0.08 2.16 8.14 -2.39 -0.02 2.14 16 42 H 0.42 12.81 7.49 -92.70 -0.69 12.11 16 43 H 0.10 1.52 7.72 -2.39 -0.02 1.50 16 44 H 0.13 1.41 8.14 -2.39 -0.02 1.39 16 45 H 0.44 7.07 8.96 -92.71 -0.83 6.24 16 46 H 0.43 12.30 8.96 -92.70 -0.83 11.47 16 Total: -1.00 -67.50 374.13 -2.81 -70.31 By element: Atomic # 1 Polarization: 40.78 SS G_CDS: -1.30 Total: 39.48 kcal Atomic # 6 Polarization: 25.19 SS G_CDS: 5.82 Total: 31.01 kcal Atomic # 7 Polarization: -126.57 SS G_CDS: -9.23 Total: -135.80 kcal Atomic # 8 Polarization: -47.12 SS G_CDS: -0.12 Total: -47.25 kcal Atomic # 14 Polarization: 40.22 SS G_CDS: 2.03 Total: 42.25 kcal Total: -67.50 -2.81 -70.31 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054051353.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.661 kcal (2) G-P(sol) polarization free energy of solvation -67.497 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.836 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.812 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.309 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.648 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds