Wall clock time and date at job start Wed Apr 1 2020 02:42:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86796 * 119.99809 * 2 1 4 4 H 1.48503 * 109.46865 * 180.02562 * 3 2 1 5 5 H 1.48495 * 109.47084 * 299.99926 * 3 2 1 6 6 H 1.48500 * 109.47139 * 60.00259 * 3 2 1 7 7 C 1.38813 * 119.99712 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99452 * 190.32329 * 7 2 1 9 9 N 1.36937 * 120.00334 * 10.31757 * 7 2 1 10 10 C 1.46685 * 121.33770 * 27.49947 * 9 7 2 11 11 C 1.50815 * 109.67859 * 135.73812 * 10 9 7 12 12 C 1.38843 * 117.80378 * 190.86862 * 11 10 9 13 13 C 1.37952 * 120.50647 * 180.52887 * 12 11 10 14 14 C 1.38267 * 119.71933 * 0.08800 * 13 12 11 15 15 C 1.37899 * 119.82389 * 359.77389 * 14 13 12 16 16 C 1.37664 * 122.35117 * 11.13894 * 11 10 9 17 17 C 1.50606 * 122.87326 * 359.05727 * 16 11 10 18 18 C 1.47233 * 121.33799 * 207.52266 * 9 7 2 19 19 H 1.09002 * 109.78006 * 124.69250 * 18 9 7 20 20 C 1.53002 * 109.82738 * 3.90792 * 18 9 7 21 21 N 1.46493 * 109.46864 * 56.54423 * 20 18 9 22 22 C 1.34777 * 120.00038 * 180.02562 * 21 20 18 23 23 O 1.21283 * 119.99830 * 359.97438 * 22 21 20 24 24 C 1.50699 * 120.00217 * 179.97438 * 22 21 20 25 25 H 1.08995 * 110.49154 * 321.24805 * 24 22 21 26 26 C 1.54105 * 110.54745 * 84.10574 * 24 22 21 27 27 N 1.47047 * 103.86406 * 118.59653 * 26 24 22 28 28 C 1.33953 * 109.18254 * 359.97438 * 27 26 24 29 29 O 1.21579 * 123.04287 * 179.97438 * 28 27 26 30 30 N 1.33953 * 113.91187 * 0.02562 * 28 27 26 31 31 H 0.97001 * 119.99820 * 359.97438 * 1 2 3 32 32 H 1.08992 * 109.43859 * 15.66997 * 10 9 7 33 33 H 1.09003 * 109.43438 * 255.79663 * 10 9 7 34 34 H 1.08001 * 119.74452 * 0.60276 * 12 11 10 35 35 H 1.08000 * 120.13976 * 180.02562 * 13 12 11 36 36 H 1.08004 * 120.08160 * 179.75297 * 14 13 12 37 37 H 1.08003 * 119.71039 * 179.97438 * 15 14 13 38 38 H 1.08991 * 109.20406 * 140.24805 * 17 16 11 39 39 H 1.09002 * 109.19898 * 259.54445 * 17 16 11 40 40 H 1.09003 * 109.46910 * 176.54436 * 20 18 9 41 41 H 1.08997 * 109.46761 * 296.54102 * 20 18 9 42 42 H 0.97002 * 120.00346 * 359.97438 * 21 20 18 43 43 H 1.09005 * 110.54531 * 237.18572 * 26 24 22 44 44 H 1.08994 * 110.54954 * 359.97438 * 26 24 22 45 45 H 0.97003 * 125.41023 * 180.02562 * 27 26 24 46 46 H 0.96992 * 125.40988 * 179.97438 * 30 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3464 -0.0006 5 1 1.8914 2.3964 -1.2125 6 1 1.8914 2.3964 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0771 -1.2098 0.1671 9 7 1.3422 -2.3784 -0.2135 10 6 0.1051 -2.4215 -1.0005 11 6 0.1476 -3.5925 -1.9498 12 6 -0.8286 -3.6638 -2.9345 13 6 -0.8489 -4.7166 -3.8257 14 6 0.1096 -5.7091 -3.7360 15 6 1.0814 -5.6379 -2.7602 16 6 1.1069 -4.5761 -1.8638 17 6 2.2049 -4.5593 -0.8331 18 6 1.8365 -3.6506 0.3388 19 1 1.0567 -4.1202 0.9385 20 6 3.0720 -3.3954 1.2044 21 7 2.7409 -2.4304 2.2556 22 6 3.6817 -2.0514 3.1432 23 8 4.8023 -2.5097 3.0718 24 6 3.3412 -1.0583 4.2243 25 1 2.6807 -0.2830 3.8360 26 6 2.6953 -1.7702 5.4288 27 7 3.6232 -1.4998 6.5370 28 6 4.6445 -0.7600 6.0853 29 8 5.5603 -0.3909 6.7947 30 7 4.5648 -0.4627 4.7817 31 1 -0.4850 0.8401 0.0004 32 1 0.0045 -1.4971 -1.5690 33 1 -0.7477 -2.5289 -0.3301 34 1 -1.5772 -2.8884 -3.0040 35 1 -1.6108 -4.7659 -4.5896 36 1 0.0968 -6.5381 -4.4282 37 1 1.8289 -6.4144 -2.6916 38 1 2.3662 -5.5722 -0.4645 39 1 3.1234 -4.1956 -1.2937 40 1 3.3965 -4.3313 1.6593 41 1 3.8741 -2.9958 0.5838 42 1 1.8447 -2.0636 2.3125 43 1 1.7129 -1.3481 5.6408 44 1 2.6204 -2.8418 5.2447 45 1 3.5136 -1.8088 7.4499 46 1 5.2113 0.0621 4.2844 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001054051354.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:42:57 Heat of formation + Delta-G solvation = -19.450871 kcal Electronic energy + Delta-G solvation = -30632.251274 eV Core-core repulsion = 26521.758087 eV Total energy + Delta-G solvation = -4110.493187 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.164 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -42.31271 -40.82447 -40.10151 -38.10827 -37.29405 -35.35574 -34.46841 -34.01654 -32.93143 -31.88046 -30.76155 -29.88455 -27.32673 -26.84637 -24.67793 -24.43601 -22.86395 -22.84018 -22.46221 -21.41794 -20.56346 -19.18000 -18.63860 -17.93083 -17.67489 -17.38913 -16.96190 -16.65392 -16.44155 -16.05631 -15.98947 -15.82858 -15.45564 -15.28061 -15.04771 -14.97585 -14.56407 -14.54530 -14.01308 -13.89470 -13.75542 -13.68140 -13.24149 -13.16654 -13.02086 -12.75667 -12.57653 -12.48819 -12.22100 -12.11473 -11.82812 -11.58838 -11.56761 -11.34793 -11.16877 -10.62837 -10.54208 -9.85337 -9.82375 -9.50831 -9.22767 -8.62980 -7.82318 -5.26068 0.61554 0.65862 1.42152 1.47863 1.53055 1.56509 1.81916 1.97461 2.33948 2.50893 3.01069 3.05058 3.34130 3.37247 3.54120 3.74747 3.88499 4.01705 4.14573 4.26408 4.28448 4.37238 4.43152 4.46779 4.54194 4.65187 4.69600 4.72781 4.75989 4.86894 4.95775 4.96391 5.26470 5.27272 5.30646 5.47092 5.57810 5.61341 5.73224 5.75441 5.78276 5.87609 6.05405 6.20753 6.27430 6.30923 6.40017 6.71573 7.19144 7.30825 7.51386 7.85430 8.41438 9.24591 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.013927 B = 0.003361 C = 0.002910 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2010.027973 B = 8329.918111 C = 9620.294511 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C -0.028 4.028 3 Si 0.936 3.064 4 H -0.282 1.282 5 H -0.304 1.304 6 H -0.284 1.284 7 C -0.228 4.228 8 H 0.064 0.936 9 N -0.599 5.599 10 C 0.223 3.777 11 C -0.108 4.108 12 C -0.138 4.138 13 C -0.129 4.129 14 C -0.133 4.133 15 C -0.129 4.129 16 C -0.083 4.083 17 C -0.086 4.086 18 C 0.161 3.839 19 H 0.051 0.949 20 C 0.142 3.858 21 N -0.682 5.682 22 C 0.500 3.500 23 O -0.583 6.583 24 C 0.101 3.899 25 H 0.134 0.866 26 C 0.111 3.889 27 N -0.725 5.725 28 C 0.698 3.302 29 O -0.638 6.638 30 N -0.715 5.715 31 H 0.249 0.751 32 H 0.061 0.939 33 H 0.019 0.981 34 H 0.115 0.885 35 H 0.140 0.860 36 H 0.146 0.854 37 H 0.139 0.861 38 H 0.095 0.905 39 H 0.065 0.935 40 H 0.079 0.921 41 H 0.046 0.954 42 H 0.417 0.583 43 H 0.134 0.866 44 H 0.098 0.902 45 H 0.442 0.558 46 H 0.431 0.569 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.688 -10.023 1.600 10.800 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.224 4.224 3 Si 0.767 3.233 4 H -0.207 1.207 5 H -0.232 1.232 6 H -0.210 1.210 7 C -0.358 4.358 8 H 0.082 0.918 9 N -0.323 5.323 10 C 0.097 3.903 11 C -0.109 4.109 12 C -0.156 4.156 13 C -0.147 4.147 14 C -0.151 4.151 15 C -0.147 4.147 16 C -0.083 4.083 17 C -0.126 4.126 18 C 0.055 3.945 19 H 0.068 0.932 20 C 0.017 3.983 21 N -0.332 5.332 22 C 0.284 3.716 23 O -0.464 6.464 24 C -0.009 4.009 25 H 0.152 0.848 26 C -0.014 4.014 27 N -0.388 5.388 28 C 0.397 3.603 29 O -0.520 6.520 30 N -0.375 5.375 31 H 0.059 0.941 32 H 0.079 0.921 33 H 0.037 0.963 34 H 0.133 0.867 35 H 0.158 0.842 36 H 0.163 0.837 37 H 0.156 0.844 38 H 0.113 0.887 39 H 0.084 0.916 40 H 0.097 0.903 41 H 0.064 0.936 42 H 0.255 0.745 43 H 0.151 0.849 44 H 0.117 0.883 45 H 0.286 0.714 46 H 0.273 0.727 Dipole moment (debyes) X Y Z Total from point charges -2.578 -10.028 1.905 10.528 hybrid contribution 0.165 1.722 -0.383 1.772 sum -2.413 -8.307 1.523 8.783 Atomic orbital electron populations 1.70065 1.05697 1.25329 1.55990 1.25364 0.95648 0.99499 1.01888 0.85696 0.78382 0.82348 0.76902 1.20684 1.23199 1.21000 1.19133 0.90784 0.83939 1.41913 0.91798 1.44165 1.26964 1.02920 1.58206 1.19361 0.87743 0.92864 0.90287 1.20826 0.95306 0.97308 0.97473 1.21238 0.98902 0.99422 0.96077 1.21296 0.99845 0.94310 0.99205 1.21310 0.95181 0.99572 0.99022 1.21438 0.99644 0.98110 0.95477 1.19664 0.96339 0.94443 0.97898 1.20847 0.96063 1.00707 0.94934 1.20836 0.93902 0.87283 0.92496 0.93176 1.21218 0.96646 0.91924 0.88492 1.45854 1.14924 1.44065 1.28353 1.20952 0.84827 0.82640 0.83164 1.90687 1.22824 1.57646 1.75203 1.22061 0.87969 0.96313 0.94563 0.84816 1.22482 0.94720 1.02076 0.82095 1.44972 1.23951 1.56391 1.13486 1.16093 0.82607 0.79070 0.82543 1.90930 1.38313 1.62341 1.60425 1.44881 1.26916 1.56864 1.08887 0.94106 0.92116 0.96307 0.86720 0.84179 0.83654 0.84363 0.88694 0.91628 0.90300 0.93583 0.74517 0.84865 0.88338 0.71414 0.72714 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -46.12 10.99 21.65 0.24 -45.89 16 2 C -0.03 -1.30 5.10 84.86 0.43 -0.87 16 3 Si 0.94 40.34 29.57 68.60 2.03 42.37 16 4 H -0.28 -12.20 7.11 99.48 0.71 -11.49 16 5 H -0.30 -13.84 7.11 99.48 0.71 -13.13 16 6 H -0.28 -11.92 7.11 99.48 0.71 -11.22 16 7 C -0.23 -10.21 7.11 84.03 0.60 -9.61 16 8 H 0.06 2.97 6.16 -2.91 -0.02 2.95 16 9 N -0.60 -24.42 2.86 -680.30 -1.95 -26.37 16 10 C 0.22 9.47 4.80 85.63 0.41 9.88 16 11 C -0.11 -3.91 5.82 -19.82 -0.12 -4.03 16 12 C -0.14 -4.45 9.62 22.35 0.22 -4.23 16 13 C -0.13 -3.35 10.05 22.21 0.22 -3.12 16 14 C -0.13 -3.17 10.04 22.20 0.22 -2.94 16 15 C -0.13 -3.35 9.59 22.37 0.21 -3.14 16 16 C -0.08 -2.65 5.76 -19.85 -0.11 -2.76 16 17 C -0.09 -2.52 5.21 29.75 0.16 -2.37 16 18 C 0.16 5.23 2.99 44.78 0.13 5.36 16 19 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 20 C 0.14 4.39 4.43 86.38 0.38 4.78 16 21 N -0.68 -20.51 4.08 -463.07 -1.89 -22.40 16 22 C 0.50 15.23 6.93 87.66 0.61 15.84 16 23 O -0.58 -22.25 16.60 -3.04 -0.05 -22.30 16 24 C 0.10 2.43 4.17 44.51 0.19 2.61 16 25 H 0.13 2.89 8.14 -2.39 -0.02 2.87 16 26 C 0.11 1.88 7.70 86.65 0.67 2.55 16 27 N -0.72 -15.19 6.37 -477.35 -3.04 -18.24 16 28 C 0.70 21.31 8.92 179.57 1.60 22.91 16 29 O -0.64 -24.91 18.05 -3.96 -0.07 -24.98 16 30 N -0.72 -20.29 5.63 -460.34 -2.59 -22.88 16 31 H 0.25 12.39 8.31 -92.71 -0.77 11.62 16 32 H 0.06 3.00 6.40 -2.39 -0.02 2.99 16 33 H 0.02 0.87 8.14 -2.39 -0.02 0.85 16 34 H 0.11 3.61 8.05 -2.91 -0.02 3.59 16 35 H 0.14 2.81 8.06 -2.91 -0.02 2.78 16 36 H 0.15 2.47 8.06 -2.91 -0.02 2.45 16 37 H 0.14 2.81 8.05 -2.91 -0.02 2.79 16 38 H 0.09 2.17 8.11 -2.39 -0.02 2.15 16 39 H 0.07 2.03 8.03 -2.39 -0.02 2.01 16 40 H 0.08 2.16 8.14 -2.39 -0.02 2.14 16 41 H 0.05 1.65 7.25 -2.39 -0.02 1.64 16 42 H 0.42 12.75 7.48 -92.71 -0.69 12.06 16 43 H 0.13 1.37 8.14 -2.38 -0.02 1.35 16 44 H 0.10 1.51 7.72 -2.39 -0.02 1.49 16 45 H 0.44 7.06 8.96 -92.71 -0.83 6.23 16 46 H 0.43 12.27 8.96 -92.71 -0.83 11.44 16 Total: -1.00 -67.89 374.05 -2.81 -70.70 By element: Atomic # 1 Polarization: 40.44 SS G_CDS: -1.30 Total: 39.13 kcal Atomic # 6 Polarization: 25.03 SS G_CDS: 5.82 Total: 30.85 kcal Atomic # 7 Polarization: -126.54 SS G_CDS: -9.23 Total: -135.78 kcal Atomic # 8 Polarization: -47.16 SS G_CDS: -0.12 Total: -47.28 kcal Atomic # 14 Polarization: 40.34 SS G_CDS: 2.03 Total: 42.37 kcal Total: -67.89 -2.81 -70.70 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054051354.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.250 kcal (2) G-P(sol) polarization free energy of solvation -67.890 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.640 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.810 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.700 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.451 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds