Wall clock time and date at job start Wed Apr 1 2020 02:43:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86801 * 120.00097 * 2 1 4 4 H 1.48502 * 109.47051 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.47038 * 299.99464 * 3 2 1 6 6 H 1.48498 * 109.47194 * 59.99506 * 3 2 1 7 7 C 1.38814 * 119.99788 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99808 * 167.77081 * 7 2 1 9 9 N 1.36932 * 120.00291 * 347.76334 * 7 2 1 10 10 C 1.46687 * 121.33999 * 331.97614 * 9 7 2 11 11 C 1.50807 * 109.67171 * 224.70320 * 10 9 7 12 12 C 1.38834 * 117.80510 * 169.08964 * 11 10 9 13 13 C 1.37960 * 120.51133 * 178.84975 * 12 11 10 14 14 C 1.38266 * 119.71303 * 0.02698 * 13 12 11 15 15 C 1.37913 * 119.82599 * 0.24699 * 14 13 12 16 16 C 1.37674 * 122.34648 * 348.40847 * 11 10 9 17 17 C 1.50603 * 122.85942 * 1.47450 * 16 11 10 18 18 C 1.47241 * 121.33910 * 152.25396 * 9 7 2 19 19 H 1.09001 * 109.77248 * 235.11254 * 18 9 7 20 20 C 1.53002 * 109.76903 * 355.89758 * 18 9 7 21 21 N 1.46500 * 109.47459 * 305.00055 * 20 18 9 22 22 C 1.34779 * 120.00116 * 179.97438 * 21 20 18 23 23 O 1.21280 * 119.99440 * 0.02562 * 22 21 20 24 24 C 1.50690 * 119.99841 * 180.02562 * 22 21 20 25 25 H 1.09004 * 110.49385 * 317.29910 * 24 22 21 26 26 C 1.54111 * 110.55026 * 80.00312 * 24 22 21 27 27 N 1.47054 * 103.86189 * 118.59354 * 26 24 22 28 28 C 1.33948 * 109.18288 * 359.97438 * 27 26 24 29 29 O 1.21578 * 123.04445 * 179.97438 * 28 27 26 30 30 N 1.33953 * 113.91229 * 0.02562 * 28 27 26 31 31 H 0.96999 * 120.00227 * 0.02562 * 1 2 3 32 32 H 1.08998 * 109.43266 * 344.75285 * 10 9 7 33 33 H 1.08998 * 109.44135 * 104.63224 * 10 9 7 34 34 H 1.08003 * 119.74465 * 358.87458 * 12 11 10 35 35 H 1.07997 * 120.14742 * 180.02562 * 13 12 11 36 36 H 1.07999 * 120.08784 * 180.27106 * 14 13 12 37 37 H 1.08000 * 119.70365 * 179.97438 * 15 14 13 38 38 H 1.09004 * 109.19620 * 219.49645 * 17 16 11 39 39 H 1.08999 * 109.16232 * 100.18464 * 17 16 11 40 40 H 1.09000 * 109.46749 * 65.00119 * 20 18 9 41 41 H 1.09000 * 109.46936 * 184.99625 * 20 18 9 42 42 H 0.96998 * 119.99438 * 0.02562 * 21 20 18 43 43 H 1.09004 * 110.54379 * 237.18593 * 26 24 22 44 44 H 1.08998 * 110.54557 * 359.97438 * 26 24 22 45 45 H 0.97003 * 125.40669 * 180.02562 * 27 26 24 46 46 H 0.96995 * 125.40987 * 180.02562 * 30 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3463 0.0006 5 1 1.8916 2.3963 -1.2125 6 1 1.8914 2.3965 1.2124 7 6 2.0102 -1.2022 0.0005 8 1 3.0718 -1.2129 -0.1976 9 7 1.3489 -2.3745 0.2524 10 6 0.1416 -2.4057 1.0849 11 6 0.2226 -3.5587 2.0537 12 6 -0.7160 -3.6134 3.0751 13 6 -0.7082 -4.6562 3.9784 14 6 0.2424 -5.6538 3.8652 15 6 1.1788 -5.5975 2.8543 16 6 1.1757 -4.5462 1.9453 17 6 2.2355 -4.5452 0.8752 18 6 1.8245 -3.6553 -0.2966 19 1 1.0244 -4.1344 -0.8608 20 6 3.0285 -3.4120 -1.2089 21 7 2.6701 -2.4357 -2.2407 22 6 3.5805 -2.0644 -3.1625 23 8 4.6963 -2.5390 -3.1381 24 6 3.2120 -1.0597 -4.2234 25 1 2.2178 -1.2691 -4.6184 26 6 3.2790 0.3726 -3.6587 27 7 4.3078 1.0275 -4.4803 28 6 4.7779 0.1513 -5.3778 29 8 5.6407 0.4303 -6.1876 30 7 4.2105 -1.0598 -5.3030 31 1 -0.4850 0.8400 -0.0004 32 1 0.0594 -1.4711 1.6397 33 1 -0.7349 -2.5274 0.4485 34 1 -1.4583 -2.8339 3.1631 35 1 -1.4414 -4.6932 4.7705 36 1 0.2514 -6.4752 4.5663 37 1 1.9207 -6.3776 2.7679 38 1 2.3840 -5.5639 0.5169 39 1 3.1694 -4.1739 1.2970 40 1 3.8601 -3.0278 -0.6183 41 1 3.3213 -4.3495 -1.6818 42 1 1.7777 -2.0559 -2.2599 43 1 2.3188 0.8752 -3.7755 44 1 3.5784 0.3570 -2.6107 45 1 4.6002 1.9477 -4.3866 46 1 4.4246 -1.8168 -5.8704 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001054051355.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:43:02 Heat of formation + Delta-G solvation = 3.091804 kcal Electronic energy + Delta-G solvation = -30904.549904 eV Core-core repulsion = 26795.034241 eV Total energy + Delta-G solvation = -4109.515663 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.164 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.13133 -39.53071 -38.80449 -36.74049 -35.98661 -33.90449 -33.04060 -32.89467 -31.53421 -30.55996 -29.40846 -28.65493 -25.75890 -25.59344 -23.54573 -22.91936 -21.67853 -21.62864 -21.19153 -20.11851 -19.17449 -17.91339 -17.42052 -16.44556 -16.31452 -16.16621 -15.69395 -15.37432 -15.20764 -14.67441 -14.60338 -14.43764 -14.24187 -13.98830 -13.77363 -13.55471 -13.33022 -13.01262 -12.80474 -12.67360 -12.54868 -12.39449 -12.10232 -11.70808 -11.67515 -11.21843 -11.04440 -10.96457 -10.81774 -10.62325 -10.31034 -10.22471 -10.12959 -9.97515 -9.79481 -9.29410 -8.92598 -8.71901 -8.47973 -8.31062 -7.93930 -6.96074 -6.06657 -3.50584 1.79397 1.86875 2.72374 2.93025 3.11871 3.21109 3.25961 3.28507 3.55463 4.12929 4.21121 4.21925 4.42587 4.91103 4.95990 5.04086 5.10669 5.17718 5.29022 5.39533 5.45326 5.49088 5.59848 5.62314 5.74591 5.79781 5.84941 5.95568 5.96016 6.10394 6.19895 6.24366 6.46975 6.54068 6.69491 6.86898 6.87728 6.92653 7.03885 7.04048 7.08843 7.21847 7.40416 7.43241 7.54366 7.57979 8.01356 8.11645 8.59572 8.71329 8.92300 9.52348 10.11699 11.02070 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.015624 B = 0.003499 C = 0.002993 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1791.725461 B = 8000.124908 C = 9354.186555 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.009 3.991 3 Si 0.886 3.114 4 H -0.276 1.276 5 H -0.285 1.285 6 H -0.288 1.288 7 C -0.247 4.247 8 H 0.072 0.928 9 N -0.588 5.588 10 C 0.208 3.792 11 C -0.078 4.078 12 C -0.123 4.123 13 C -0.130 4.130 14 C -0.140 4.140 15 C -0.127 4.127 16 C -0.068 4.068 17 C -0.091 4.091 18 C 0.158 3.842 19 H 0.044 0.956 20 C 0.136 3.864 21 N -0.685 5.685 22 C 0.497 3.503 23 O -0.546 6.546 24 C 0.106 3.894 25 H 0.115 0.885 26 C 0.102 3.898 27 N -0.739 5.739 28 C 0.707 3.293 29 O -0.594 6.594 30 N -0.714 5.714 31 H 0.256 0.744 32 H 0.095 0.905 33 H 0.044 0.956 34 H 0.117 0.883 35 H 0.112 0.888 36 H 0.111 0.889 37 H 0.111 0.889 38 H 0.063 0.937 39 H 0.074 0.926 40 H 0.068 0.932 41 H 0.059 0.941 42 H 0.418 0.582 43 H 0.097 0.903 44 H 0.092 0.908 45 H 0.430 0.570 46 H 0.432 0.568 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.536 -5.837 -0.169 6.366 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.190 4.190 3 Si 0.716 3.284 4 H -0.201 1.201 5 H -0.211 1.211 6 H -0.215 1.215 7 C -0.376 4.376 8 H 0.089 0.911 9 N -0.312 5.312 10 C 0.082 3.918 11 C -0.080 4.080 12 C -0.142 4.142 13 C -0.148 4.148 14 C -0.158 4.158 15 C -0.146 4.146 16 C -0.068 4.068 17 C -0.130 4.130 18 C 0.051 3.949 19 H 0.062 0.938 20 C 0.012 3.988 21 N -0.337 5.337 22 C 0.279 3.721 23 O -0.424 6.424 24 C -0.004 4.004 25 H 0.133 0.867 26 C -0.023 4.023 27 N -0.401 5.401 28 C 0.406 3.594 29 O -0.473 6.473 30 N -0.375 5.375 31 H 0.067 0.933 32 H 0.113 0.887 33 H 0.061 0.939 34 H 0.135 0.865 35 H 0.130 0.870 36 H 0.129 0.871 37 H 0.129 0.871 38 H 0.082 0.918 39 H 0.092 0.908 40 H 0.086 0.914 41 H 0.078 0.922 42 H 0.256 0.744 43 H 0.116 0.884 44 H 0.110 0.890 45 H 0.272 0.728 46 H 0.273 0.727 Dipole moment (debyes) X Y Z Total from point charges -1.432 -5.870 -0.569 6.069 hybrid contribution -0.027 1.064 0.429 1.148 sum -1.459 -4.806 -0.141 5.025 Atomic orbital electron populations 1.69962 1.04982 1.25700 1.53813 1.25004 0.95262 0.97872 1.00843 0.86492 0.79637 0.84372 0.77937 1.20099 1.21141 1.21470 1.19153 0.91581 0.83418 1.43457 0.91064 1.44029 1.30039 1.01848 1.55267 1.19769 0.88857 0.93409 0.89722 1.20993 0.93278 0.97205 0.96494 1.21119 0.99258 0.98454 0.95372 1.20961 0.99165 0.95251 0.99441 1.20861 0.96718 0.99189 0.99011 1.21131 0.99120 0.98473 0.95839 1.19470 0.96598 0.94049 0.96693 1.20885 0.97163 0.99549 0.95440 1.20719 0.93942 0.88657 0.91571 0.93836 1.21280 0.97784 0.90958 0.88781 1.45903 1.16382 1.43330 1.28059 1.20529 0.85545 0.82984 0.83020 1.90697 1.21088 1.56076 1.74581 1.21807 0.94661 0.95495 0.88428 0.86742 1.22333 0.93591 0.89573 0.96843 1.45075 1.43325 1.14813 1.36914 1.15831 0.80893 0.81360 0.81308 1.90963 1.34429 1.80250 1.41656 1.44770 1.42665 1.13339 1.36754 0.93336 0.88685 0.93878 0.86468 0.86978 0.87108 0.87075 0.91827 0.90801 0.91417 0.92241 0.74361 0.88441 0.88991 0.72821 0.72652 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -21.21 11.13 55.49 0.62 -20.60 16 2 C 0.01 0.21 5.05 -17.43 -0.09 0.12 16 3 Si 0.89 18.36 29.05 -169.99 -4.94 13.42 16 4 H -0.28 -5.81 7.11 56.52 0.40 -5.41 16 5 H -0.28 -5.67 7.11 56.52 0.40 -5.27 16 6 H -0.29 -6.36 7.11 56.52 0.40 -5.96 16 7 C -0.25 -5.32 6.97 -15.06 -0.10 -5.42 16 8 H 0.07 1.60 6.19 -52.49 -0.32 1.27 16 9 N -0.59 -11.70 2.85 -166.39 -0.47 -12.18 16 10 C 0.21 4.21 4.82 -5.04 -0.02 4.18 16 11 C -0.08 -1.41 5.82 -104.56 -0.61 -2.02 16 12 C -0.12 -2.00 9.62 -39.46 -0.38 -2.38 16 13 C -0.13 -1.86 10.05 -39.67 -0.40 -2.26 16 14 C -0.14 -1.93 10.04 -39.69 -0.40 -2.33 16 15 C -0.13 -1.87 9.59 -39.43 -0.38 -2.25 16 16 C -0.07 -1.13 5.76 -104.60 -0.60 -1.73 16 17 C -0.09 -1.40 5.21 -28.05 -0.15 -1.55 16 18 C 0.16 2.64 3.02 -67.64 -0.20 2.43 16 19 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 20 C 0.14 2.18 4.45 -4.04 -0.02 2.16 16 21 N -0.69 -10.72 4.02 -60.30 -0.24 -10.97 16 22 C 0.50 7.89 6.95 -10.99 -0.08 7.81 16 23 O -0.55 -10.58 16.56 5.56 0.09 -10.49 16 24 C 0.11 1.39 4.17 -68.20 -0.28 1.11 16 25 H 0.11 1.15 8.14 -51.93 -0.42 0.72 16 26 C 0.10 1.37 7.70 -3.16 -0.02 1.35 16 27 N -0.74 -10.27 6.37 -64.70 -0.41 -10.69 16 28 C 0.71 11.58 8.92 -88.39 -0.79 10.79 16 29 O -0.59 -11.81 18.05 5.30 0.10 -11.71 16 30 N -0.71 -10.02 5.60 -59.33 -0.33 -10.36 16 31 H 0.26 6.01 8.31 -40.82 -0.34 5.67 16 32 H 0.10 2.19 6.48 -51.93 -0.34 1.85 16 33 H 0.04 0.93 8.14 -51.93 -0.42 0.51 16 34 H 0.12 1.78 8.05 -52.48 -0.42 1.36 16 35 H 0.11 1.31 8.06 -52.49 -0.42 0.89 16 36 H 0.11 1.24 8.06 -52.49 -0.42 0.82 16 37 H 0.11 1.39 8.05 -52.49 -0.42 0.96 16 38 H 0.06 0.83 8.10 -51.93 -0.42 0.41 16 39 H 0.07 1.19 8.01 -51.93 -0.42 0.77 16 40 H 0.07 1.22 7.30 -51.93 -0.38 0.84 16 41 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 42 H 0.42 6.69 7.35 -40.82 -0.30 6.39 16 43 H 0.10 1.13 8.14 -51.93 -0.42 0.70 16 44 H 0.09 1.41 7.19 -51.93 -0.37 1.04 16 45 H 0.43 5.15 8.96 -40.82 -0.37 4.78 16 46 H 0.43 5.46 8.96 -40.82 -0.37 5.09 16 LS Contribution 372.88 15.07 5.62 5.62 Total: -1.00 -29.00 372.88 -10.72 -39.73 By element: Atomic # 1 Polarization: 24.42 SS G_CDS: -6.22 Total: 18.20 kcal Atomic # 6 Polarization: 14.54 SS G_CDS: -4.53 Total: 10.02 kcal Atomic # 7 Polarization: -63.94 SS G_CDS: -0.84 Total: -64.78 kcal Atomic # 8 Polarization: -22.39 SS G_CDS: 0.19 Total: -22.20 kcal Atomic # 14 Polarization: 18.36 SS G_CDS: -4.94 Total: 13.42 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -29.00 -10.72 -39.73 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054051355.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.817 kcal (2) G-P(sol) polarization free energy of solvation -29.004 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.813 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.721 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.725 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.092 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds