Wall clock time and date at job start Wed Apr 1 2020 02:43:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86801 * 120.00097 * 2 1 4 4 H 1.48502 * 109.47051 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.47038 * 299.99464 * 3 2 1 6 6 H 1.48498 * 109.47194 * 59.99506 * 3 2 1 7 7 C 1.38814 * 119.99788 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99808 * 167.77081 * 7 2 1 9 9 N 1.36932 * 120.00291 * 347.76334 * 7 2 1 10 10 C 1.46687 * 121.33999 * 331.97614 * 9 7 2 11 11 C 1.50807 * 109.67171 * 224.70320 * 10 9 7 12 12 C 1.38834 * 117.80510 * 169.08964 * 11 10 9 13 13 C 1.37960 * 120.51133 * 178.84975 * 12 11 10 14 14 C 1.38266 * 119.71303 * 0.02698 * 13 12 11 15 15 C 1.37913 * 119.82599 * 0.24699 * 14 13 12 16 16 C 1.37674 * 122.34648 * 348.40847 * 11 10 9 17 17 C 1.50603 * 122.85942 * 1.47450 * 16 11 10 18 18 C 1.47241 * 121.33910 * 152.25396 * 9 7 2 19 19 H 1.09001 * 109.77248 * 235.11254 * 18 9 7 20 20 C 1.53002 * 109.76903 * 355.89758 * 18 9 7 21 21 N 1.46500 * 109.47459 * 305.00055 * 20 18 9 22 22 C 1.34779 * 120.00116 * 179.97438 * 21 20 18 23 23 O 1.21280 * 119.99440 * 0.02562 * 22 21 20 24 24 C 1.50690 * 119.99841 * 180.02562 * 22 21 20 25 25 H 1.09004 * 110.49385 * 317.29910 * 24 22 21 26 26 C 1.54111 * 110.55026 * 80.00312 * 24 22 21 27 27 N 1.47054 * 103.86189 * 118.59354 * 26 24 22 28 28 C 1.33948 * 109.18288 * 359.97438 * 27 26 24 29 29 O 1.21578 * 123.04445 * 179.97438 * 28 27 26 30 30 N 1.33953 * 113.91229 * 0.02562 * 28 27 26 31 31 H 0.96999 * 120.00227 * 0.02562 * 1 2 3 32 32 H 1.08998 * 109.43266 * 344.75285 * 10 9 7 33 33 H 1.08998 * 109.44135 * 104.63224 * 10 9 7 34 34 H 1.08003 * 119.74465 * 358.87458 * 12 11 10 35 35 H 1.07997 * 120.14742 * 180.02562 * 13 12 11 36 36 H 1.07999 * 120.08784 * 180.27106 * 14 13 12 37 37 H 1.08000 * 119.70365 * 179.97438 * 15 14 13 38 38 H 1.09004 * 109.19620 * 219.49645 * 17 16 11 39 39 H 1.08999 * 109.16232 * 100.18464 * 17 16 11 40 40 H 1.09000 * 109.46749 * 65.00119 * 20 18 9 41 41 H 1.09000 * 109.46936 * 184.99625 * 20 18 9 42 42 H 0.96998 * 119.99438 * 0.02562 * 21 20 18 43 43 H 1.09004 * 110.54379 * 237.18593 * 26 24 22 44 44 H 1.08998 * 110.54557 * 359.97438 * 26 24 22 45 45 H 0.97003 * 125.40669 * 180.02562 * 27 26 24 46 46 H 0.96995 * 125.40987 * 180.02562 * 30 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3463 0.0006 5 1 1.8916 2.3963 -1.2125 6 1 1.8914 2.3965 1.2124 7 6 2.0102 -1.2022 0.0005 8 1 3.0718 -1.2129 -0.1976 9 7 1.3489 -2.3745 0.2524 10 6 0.1416 -2.4057 1.0849 11 6 0.2226 -3.5587 2.0537 12 6 -0.7160 -3.6134 3.0751 13 6 -0.7082 -4.6562 3.9784 14 6 0.2424 -5.6538 3.8652 15 6 1.1788 -5.5975 2.8543 16 6 1.1757 -4.5462 1.9453 17 6 2.2355 -4.5452 0.8752 18 6 1.8245 -3.6553 -0.2966 19 1 1.0244 -4.1344 -0.8608 20 6 3.0285 -3.4120 -1.2089 21 7 2.6701 -2.4357 -2.2407 22 6 3.5805 -2.0644 -3.1625 23 8 4.6963 -2.5390 -3.1381 24 6 3.2120 -1.0597 -4.2234 25 1 2.2178 -1.2691 -4.6184 26 6 3.2790 0.3726 -3.6587 27 7 4.3078 1.0275 -4.4803 28 6 4.7779 0.1513 -5.3778 29 8 5.6407 0.4303 -6.1876 30 7 4.2105 -1.0598 -5.3030 31 1 -0.4850 0.8400 -0.0004 32 1 0.0594 -1.4711 1.6397 33 1 -0.7349 -2.5274 0.4485 34 1 -1.4583 -2.8339 3.1631 35 1 -1.4414 -4.6932 4.7705 36 1 0.2514 -6.4752 4.5663 37 1 1.9207 -6.3776 2.7679 38 1 2.3840 -5.5639 0.5169 39 1 3.1694 -4.1739 1.2970 40 1 3.8601 -3.0278 -0.6183 41 1 3.3213 -4.3495 -1.6818 42 1 1.7777 -2.0559 -2.2599 43 1 2.3188 0.8752 -3.7755 44 1 3.5784 0.3570 -2.6107 45 1 4.6002 1.9477 -4.3866 46 1 4.4246 -1.8168 -5.8704 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001054051355.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:43:01 Heat of formation + Delta-G solvation = -17.443545 kcal Electronic energy + Delta-G solvation = -30905.440384 eV Core-core repulsion = 26795.034241 eV Total energy + Delta-G solvation = -4110.406143 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.164 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.34183 -40.82961 -40.10800 -38.10645 -37.32016 -35.33270 -34.47484 -34.05110 -32.93313 -31.87771 -30.77039 -29.89418 -27.30572 -26.86561 -24.74465 -24.41324 -22.87160 -22.86472 -22.48068 -21.40661 -20.56260 -19.19555 -18.68063 -17.84132 -17.72061 -17.38520 -17.01818 -16.60995 -16.50159 -16.10876 -15.98348 -15.71968 -15.58603 -15.23218 -15.04170 -14.97805 -14.67430 -14.47159 -14.07130 -13.89947 -13.76519 -13.65382 -13.36164 -13.17172 -12.97603 -12.68395 -12.56903 -12.47278 -12.21337 -12.10987 -11.81723 -11.59618 -11.56885 -11.34777 -11.17403 -10.60062 -10.56685 -9.86478 -9.84234 -9.51150 -9.23117 -8.61117 -7.79906 -5.23813 0.61233 0.65490 1.42685 1.51134 1.56007 1.58922 1.71168 1.98192 2.32297 2.52496 2.99793 3.01949 3.30779 3.38789 3.54250 3.73925 3.88605 3.97163 4.14361 4.26112 4.27935 4.32457 4.42872 4.46315 4.52951 4.58408 4.64232 4.73004 4.75566 4.86484 4.95802 4.96134 5.25733 5.26658 5.30374 5.47107 5.56079 5.61570 5.72985 5.76562 5.78752 5.88081 6.04698 6.17903 6.22708 6.30689 6.41592 6.71823 7.20441 7.30756 7.49450 7.86656 8.43980 9.27296 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.015624 B = 0.003499 C = 0.002993 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1791.725461 B = 8000.124908 C = 9354.186555 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.022 4.022 3 Si 0.925 3.075 4 H -0.282 1.282 5 H -0.267 1.267 6 H -0.310 1.310 7 C -0.231 4.231 8 H 0.063 0.937 9 N -0.598 5.598 10 C 0.223 3.777 11 C -0.108 4.108 12 C -0.138 4.138 13 C -0.129 4.129 14 C -0.133 4.133 15 C -0.129 4.129 16 C -0.083 4.083 17 C -0.086 4.086 18 C 0.161 3.839 19 H 0.049 0.951 20 C 0.142 3.858 21 N -0.681 5.681 22 C 0.498 3.502 23 O -0.583 6.583 24 C 0.112 3.888 25 H 0.155 0.845 26 C 0.101 3.899 27 N -0.730 5.730 28 C 0.700 3.300 29 O -0.634 6.634 30 N -0.706 5.706 31 H 0.250 0.750 32 H 0.059 0.941 33 H 0.020 0.980 34 H 0.115 0.885 35 H 0.140 0.860 36 H 0.146 0.854 37 H 0.138 0.862 38 H 0.094 0.906 39 H 0.066 0.934 40 H 0.046 0.954 41 H 0.078 0.922 42 H 0.418 0.582 43 H 0.124 0.876 44 H 0.073 0.927 45 H 0.438 0.562 46 H 0.437 0.563 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.937 -7.747 0.366 8.294 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.219 4.219 3 Si 0.755 3.245 4 H -0.207 1.207 5 H -0.193 1.193 6 H -0.238 1.238 7 C -0.361 4.361 8 H 0.081 0.919 9 N -0.322 5.322 10 C 0.098 3.902 11 C -0.109 4.109 12 C -0.156 4.156 13 C -0.147 4.147 14 C -0.151 4.151 15 C -0.147 4.147 16 C -0.083 4.083 17 C -0.125 4.125 18 C 0.055 3.945 19 H 0.066 0.934 20 C 0.017 3.983 21 N -0.332 5.332 22 C 0.282 3.718 23 O -0.463 6.463 24 C 0.002 3.998 25 H 0.173 0.827 26 C -0.024 4.024 27 N -0.392 5.392 28 C 0.399 3.601 29 O -0.516 6.516 30 N -0.367 5.367 31 H 0.060 0.940 32 H 0.077 0.923 33 H 0.038 0.962 34 H 0.133 0.867 35 H 0.158 0.842 36 H 0.163 0.837 37 H 0.156 0.844 38 H 0.112 0.888 39 H 0.084 0.916 40 H 0.065 0.935 41 H 0.096 0.904 42 H 0.256 0.744 43 H 0.142 0.858 44 H 0.091 0.909 45 H 0.281 0.719 46 H 0.280 0.720 Dipole moment (debyes) X Y Z Total from point charges -1.856 -7.798 -0.026 8.016 hybrid contribution 0.090 1.554 0.398 1.607 sum -1.766 -6.244 0.372 6.500 Atomic orbital electron populations 1.70070 1.05741 1.25439 1.55481 1.25328 0.95522 0.99366 1.01691 0.85893 0.78423 0.82615 0.77534 1.20720 1.19290 1.23810 1.19115 0.91096 0.84145 1.41783 0.91909 1.44151 1.29768 1.02600 1.55676 1.19336 0.88266 0.93035 0.89568 1.20823 0.95444 0.97339 0.97305 1.21241 0.99137 0.99486 0.95765 1.21299 0.99764 0.94357 0.99248 1.21312 0.95437 0.99524 0.98818 1.21438 0.99801 0.98215 0.95245 1.19664 0.96472 0.94459 0.97741 1.20845 0.96390 1.00758 0.94548 1.20825 0.94095 0.87337 0.92283 0.93375 1.21218 0.96658 0.91715 0.88684 1.45883 1.16299 1.43121 1.27847 1.20962 0.84784 0.82836 0.83176 1.90684 1.22513 1.57585 1.75560 1.21961 0.96045 0.94401 0.87346 0.82730 1.22429 0.94416 0.89966 0.95623 1.45056 1.43084 1.15005 1.36100 1.16041 0.80654 0.82140 0.81286 1.90930 1.36237 1.81069 1.43373 1.44753 1.42449 1.12886 1.36641 0.94017 0.92300 0.96241 0.86672 0.84176 0.83674 0.84400 0.88794 0.91591 0.93515 0.90380 0.74381 0.85833 0.90874 0.71880 0.71960 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -44.50 11.13 21.65 0.24 -44.26 16 2 C -0.02 -1.01 5.05 84.86 0.43 -0.58 16 3 Si 0.93 38.01 29.05 68.60 1.99 40.00 16 4 H -0.28 -11.72 7.11 99.48 0.71 -11.01 16 5 H -0.27 -10.13 7.11 99.48 0.71 -9.42 16 6 H -0.31 -13.80 7.11 99.48 0.71 -13.10 16 7 C -0.23 -10.09 6.97 84.03 0.59 -9.51 16 8 H 0.06 2.85 6.19 -2.91 -0.02 2.83 16 9 N -0.60 -24.09 2.85 -680.33 -1.94 -26.02 16 10 C 0.22 9.38 4.82 85.63 0.41 9.80 16 11 C -0.11 -3.89 5.82 -19.82 -0.12 -4.00 16 12 C -0.14 -4.41 9.62 22.35 0.22 -4.20 16 13 C -0.13 -3.34 10.05 22.21 0.22 -3.11 16 14 C -0.13 -3.17 10.04 22.20 0.22 -2.94 16 15 C -0.13 -3.36 9.59 22.37 0.21 -3.15 16 16 C -0.08 -2.64 5.76 -19.85 -0.11 -2.76 16 17 C -0.09 -2.52 5.21 29.74 0.16 -2.37 16 18 C 0.16 5.24 3.02 44.78 0.14 5.37 16 19 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 20 C 0.14 4.42 4.45 86.38 0.38 4.80 16 21 N -0.68 -20.70 4.02 -463.06 -1.86 -22.56 16 22 C 0.50 15.28 6.95 87.65 0.61 15.89 16 23 O -0.58 -22.22 16.56 -3.03 -0.05 -22.27 16 24 C 0.11 2.72 4.17 44.51 0.19 2.90 16 25 H 0.16 2.58 8.14 -2.38 -0.02 2.56 16 26 C 0.10 2.53 7.70 86.65 0.67 3.20 16 27 N -0.73 -19.40 6.37 -477.33 -3.04 -22.44 16 28 C 0.70 22.34 8.92 179.57 1.60 23.95 16 29 O -0.63 -25.13 18.05 -3.96 -0.07 -25.20 16 30 N -0.71 -18.89 5.60 -460.34 -2.58 -21.47 16 31 H 0.25 12.02 8.31 -92.71 -0.77 11.25 16 32 H 0.06 2.86 6.48 -2.39 -0.02 2.85 16 33 H 0.02 0.89 8.14 -2.39 -0.02 0.88 16 34 H 0.12 3.59 8.05 -2.91 -0.02 3.57 16 35 H 0.14 2.79 8.06 -2.91 -0.02 2.77 16 36 H 0.15 2.48 8.06 -2.91 -0.02 2.45 16 37 H 0.14 2.82 8.05 -2.91 -0.02 2.80 16 38 H 0.09 2.17 8.10 -2.38 -0.02 2.15 16 39 H 0.07 2.04 8.01 -2.39 -0.02 2.02 16 40 H 0.05 1.67 7.30 -2.39 -0.02 1.65 16 41 H 0.08 2.17 8.14 -2.39 -0.02 2.15 16 42 H 0.42 12.97 7.35 -92.71 -0.68 12.29 16 43 H 0.12 2.51 8.14 -2.39 -0.02 2.49 16 44 H 0.07 2.16 7.19 -2.39 -0.02 2.14 16 45 H 0.44 10.01 8.96 -92.71 -0.83 9.18 16 46 H 0.44 10.55 8.96 -92.71 -0.83 9.72 16 Total: -1.00 -64.41 372.88 -2.79 -67.19 By element: Atomic # 1 Polarization: 45.04 SS G_CDS: -1.29 Total: 43.75 kcal Atomic # 6 Polarization: 27.47 SS G_CDS: 5.81 Total: 33.28 kcal Atomic # 7 Polarization: -127.57 SS G_CDS: -9.18 Total: -136.75 kcal Atomic # 8 Polarization: -47.35 SS G_CDS: -0.12 Total: -47.47 kcal Atomic # 14 Polarization: 38.01 SS G_CDS: 1.99 Total: 40.00 kcal Total: -64.41 -2.79 -67.19 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054051355.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.751 kcal (2) G-P(sol) polarization free energy of solvation -64.407 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.656 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.787 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.194 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.444 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds