Wall clock time and date at job start Wed Apr 1 2020 02:23:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31631 * 1 3 3 Si 1.86803 * 119.99778 * 2 1 4 4 H 1.48503 * 109.47051 * 269.99857 * 3 2 1 5 5 H 1.48498 * 109.47036 * 29.99956 * 3 2 1 6 6 H 1.48501 * 109.47112 * 149.99997 * 3 2 1 7 7 C 1.38797 * 120.00364 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00016 * 0.02562 * 7 2 1 9 9 S 1.76195 * 120.00011 * 179.97438 * 7 2 1 10 10 C 1.81000 * 99.99848 * 180.02562 * 9 7 2 11 11 C 1.50706 * 109.47156 * 180.02562 * 10 9 7 12 12 O 1.21280 * 120.00097 * 359.97438 * 11 10 9 13 13 N 1.34780 * 119.99754 * 180.02562 * 11 10 9 14 14 C 1.46506 * 119.99483 * 179.97438 * 13 11 10 15 15 C 1.52998 * 109.46919 * 179.97438 * 14 13 11 16 16 N 1.46496 * 109.47312 * 179.97438 * 15 14 13 17 17 C 1.46504 * 120.00275 * 270.00537 * 16 15 14 18 18 C 1.53000 * 109.46913 * 269.99798 * 17 16 15 19 19 O 1.42906 * 109.47042 * 64.99432 * 18 17 16 20 20 C 1.34777 * 119.99867 * 89.99887 * 16 15 14 21 21 O 1.21279 * 120.00166 * 0.02562 * 20 16 15 22 22 C 1.50706 * 120.00142 * 180.02562 * 20 16 15 23 23 C 1.52999 * 109.46957 * 180.02562 * 22 20 16 24 24 C 1.53006 * 109.46626 * 180.02562 * 23 22 20 25 25 C 1.53003 * 117.49663 * 243.74292 * 24 23 22 26 26 C 1.53002 * 117.49643 * 175.08260 * 24 23 22 27 27 H 0.96996 * 120.00181 * 0.02562 * 1 2 3 28 28 H 1.08999 * 109.47660 * 60.00334 * 10 9 7 29 29 H 1.09001 * 109.47310 * 300.00040 * 10 9 7 30 30 H 0.96995 * 120.00515 * 359.97438 * 13 11 10 31 31 H 1.09002 * 109.46701 * 60.00500 * 14 13 11 32 32 H 1.08996 * 109.47200 * 299.99626 * 14 13 11 33 33 H 1.09002 * 109.47223 * 59.99894 * 15 14 13 34 34 H 1.09004 * 109.47223 * 300.00533 * 15 14 13 35 35 H 1.08994 * 109.46914 * 29.99478 * 17 16 15 36 36 H 1.08996 * 109.47264 * 149.99614 * 17 16 15 37 37 H 1.08991 * 109.47075 * 184.99831 * 18 17 16 38 38 H 1.09001 * 109.47241 * 304.99996 * 18 17 16 39 39 H 0.96707 * 113.99753 * 179.97438 * 19 18 17 40 40 H 1.08993 * 109.46700 * 59.99973 * 22 20 16 41 41 H 1.09000 * 109.46974 * 300.00347 * 22 20 16 42 42 H 1.08993 * 109.47839 * 60.00178 * 23 22 20 43 43 H 1.09000 * 109.47160 * 299.99740 * 23 22 20 44 44 H 1.09002 * 115.55153 * 29.41498 * 24 23 22 45 45 H 1.08998 * 117.49856 * 0.02562 * 25 24 23 46 46 H 1.09000 * 117.49861 * 145.02337 * 25 24 23 47 47 H 1.08993 * 117.50251 * 214.97577 * 26 24 23 48 48 H 1.09003 * 117.49715 * 0.02562 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 2.4978 2.0465 -1.4001 5 1 1.4477 2.6527 0.7000 6 1 3.5478 1.4403 0.7000 7 6 2.0104 -1.2020 0.0005 8 1 1.4704 -2.1373 0.0005 9 16 3.7723 -1.2019 -0.0001 10 6 4.0867 -2.9844 0.0001 11 6 5.5732 -3.2323 0.0002 12 8 6.3442 -2.2961 -0.0003 13 7 6.0458 -4.4945 -0.0001 14 6 7.4909 -4.7355 -0.0005 15 6 7.7567 -6.2422 -0.0002 16 7 9.2017 -6.4833 -0.0012 17 6 9.9233 -6.6042 -1.2705 18 6 9.9371 -8.0691 -1.7117 19 8 8.6022 -8.4943 -1.9935 20 6 9.8673 -6.5937 1.1655 21 8 9.2699 -6.4939 2.2162 22 6 11.3539 -6.8411 1.1645 23 6 11.8579 -6.9252 2.6066 24 6 13.3673 -7.1757 2.6055 25 6 13.8653 -8.4924 3.2050 26 6 14.0841 -7.1772 3.9572 27 1 -0.4850 0.8400 -0.0004 28 1 3.6435 -3.4317 -0.8896 29 1 3.6441 -3.4312 0.8904 30 1 5.4293 -5.2433 0.0000 31 1 7.9340 -4.2886 0.8895 32 1 7.9336 -4.2884 -0.8906 33 1 7.3134 -6.6896 -0.8898 34 1 7.3140 -6.6891 0.8901 35 1 9.4261 -6.0007 -2.0299 36 1 10.9473 -6.2540 -1.1411 37 1 10.5484 -8.1728 -2.6080 38 1 10.3538 -8.6848 -0.9145 39 1 8.5351 -9.4156 -2.2801 40 1 11.8579 -6.0229 0.6501 41 1 11.5658 -7.7787 0.6506 42 1 11.3538 -7.7435 3.1206 43 1 11.6459 -5.9877 3.1208 44 1 13.9096 -6.7759 1.7486 45 1 13.1176 -9.1802 3.5998 46 1 14.7354 -8.9585 2.7429 47 1 15.0981 -6.7788 3.9896 48 1 13.4803 -7.0001 4.8472 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001057232791.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:23:41 Heat of formation + Delta-G solvation = -107.388748 kcal Electronic energy + Delta-G solvation = -27040.398692 eV Core-core repulsion = 23029.243433 eV Total energy + Delta-G solvation = -4011.155259 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 344.160 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.54022 -39.15419 -38.05778 -37.55591 -35.94825 -34.50919 -32.74534 -32.40769 -30.83649 -29.52157 -28.00105 -25.64286 -25.38173 -23.58272 -22.85411 -22.67779 -20.85817 -20.51964 -19.29243 -18.21459 -17.83168 -17.17682 -17.03679 -16.43453 -16.05795 -15.86092 -15.58073 -15.39397 -15.13775 -14.92351 -14.53351 -14.40786 -13.96231 -13.80921 -13.70012 -13.36053 -13.16604 -12.97883 -12.77018 -12.52540 -12.36464 -12.18601 -12.01669 -11.93301 -11.77480 -11.59843 -11.32854 -11.23637 -10.98004 -10.74561 -10.60479 -10.57895 -10.32775 -10.08270 -9.83075 -9.51749 -9.07947 -8.98747 -8.92013 -8.46383 -6.88178 -6.25927 -3.97313 2.28459 2.43076 2.87323 3.03039 3.34581 3.35301 3.42469 3.53710 3.66179 3.76429 3.97279 4.27099 4.36220 4.43411 4.45668 4.50052 4.55799 4.70760 4.73444 4.75498 4.79877 4.87482 4.92229 4.97822 5.02753 5.13140 5.14046 5.21715 5.30054 5.33334 5.41306 5.47510 5.52957 5.65427 5.70778 5.71941 5.83071 5.84087 5.94595 6.05917 6.13744 6.56905 6.96322 7.10922 7.64816 7.84001 7.97203 8.44839 8.53901 9.20362 10.83303 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.016347 B = 0.001824 C = 0.001699 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1712.462774 B =15351.131028 C =16476.393014 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.881 5.881 2 C 0.096 3.904 3 Si 0.857 3.143 4 H -0.267 1.267 5 H -0.274 1.274 6 H -0.235 1.235 7 C -0.521 4.521 8 H 0.088 0.912 9 S -0.142 6.142 10 C -0.123 4.123 11 C 0.532 3.468 12 O -0.520 6.520 13 N -0.733 5.733 14 C 0.109 3.891 15 C 0.109 3.891 16 N -0.604 5.604 17 C 0.106 3.894 18 C 0.057 3.943 19 O -0.567 6.567 20 C 0.510 3.490 21 O -0.531 6.531 22 C -0.137 4.137 23 C -0.075 4.075 24 C -0.155 4.155 25 C -0.182 4.182 26 C -0.180 4.180 27 H 0.270 0.730 28 H 0.097 0.903 29 H 0.098 0.902 30 H 0.400 0.600 31 H 0.067 0.933 32 H 0.064 0.936 33 H 0.094 0.906 34 H 0.087 0.913 35 H 0.092 0.908 36 H 0.097 0.903 37 H 0.058 0.942 38 H 0.048 0.952 39 H 0.380 0.620 40 H 0.095 0.905 41 H 0.092 0.908 42 H 0.071 0.929 43 H 0.076 0.924 44 H 0.105 0.895 45 H 0.094 0.906 46 H 0.092 0.908 47 H 0.094 0.906 48 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 28.824 -23.134 -2.057 37.017 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.517 5.517 2 C -0.113 4.113 3 Si 0.681 3.319 4 H -0.192 1.192 5 H -0.200 1.200 6 H -0.159 1.159 7 C -0.669 4.669 8 H 0.106 0.894 9 S 0.084 5.916 10 C -0.274 4.274 11 C 0.318 3.682 12 O -0.395 6.395 13 N -0.388 5.388 14 C -0.017 4.017 15 C -0.015 4.015 16 N -0.337 5.337 17 C -0.018 4.018 18 C -0.022 4.022 19 O -0.373 6.373 20 C 0.299 3.701 21 O -0.406 6.406 22 C -0.176 4.176 23 C -0.113 4.113 24 C -0.173 4.173 25 C -0.219 4.219 26 C -0.217 4.217 27 H 0.080 0.920 28 H 0.116 0.884 29 H 0.116 0.884 30 H 0.234 0.766 31 H 0.086 0.914 32 H 0.082 0.918 33 H 0.112 0.888 34 H 0.106 0.894 35 H 0.110 0.890 36 H 0.115 0.885 37 H 0.076 0.924 38 H 0.066 0.934 39 H 0.228 0.772 40 H 0.113 0.887 41 H 0.110 0.890 42 H 0.090 0.910 43 H 0.094 0.906 44 H 0.123 0.877 45 H 0.112 0.888 46 H 0.110 0.890 47 H 0.112 0.888 48 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 29.498 -20.790 -1.309 36.112 hybrid contribution -0.856 -1.312 -0.371 1.610 sum 28.642 -22.101 -1.680 36.217 Atomic orbital electron populations 1.69939 1.05902 1.27728 1.48168 1.24709 0.94447 0.98946 0.93196 0.86734 0.81932 0.83288 0.79901 1.19229 1.19952 1.15915 1.22327 0.88298 0.97553 1.58674 0.89366 1.84783 1.09239 1.00158 1.97427 1.23276 0.93919 1.04315 1.05884 1.20272 0.90598 0.82171 0.75199 1.90696 1.58815 1.42196 1.47756 1.45784 1.07132 1.08185 1.77736 1.21578 0.81845 0.95788 1.02493 1.21584 0.80576 0.94783 1.04510 1.47739 1.08417 1.71760 1.05779 1.21765 0.98301 0.95575 0.86158 1.22699 0.84539 0.95871 0.99108 1.86510 1.27249 1.33308 1.90217 1.20834 0.90002 0.76058 0.83234 1.90742 1.69787 1.49338 1.30777 1.21731 0.92028 1.03837 1.00041 1.20942 0.91953 1.03556 0.94868 1.22349 0.95746 1.01697 0.97507 1.23069 1.03376 0.90968 1.04528 1.22983 1.01670 1.01336 0.95726 0.91972 0.88425 0.88379 0.76594 0.91442 0.91751 0.88819 0.89424 0.88973 0.88496 0.92423 0.93414 0.77236 0.88682 0.88953 0.90990 0.90571 0.87729 0.88761 0.88957 0.88801 0.88625 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.90 13.97 55.49 0.78 -26.13 16 2 C 0.10 2.84 5.50 -17.43 -0.10 2.74 16 3 Si 0.86 22.15 27.74 -169.99 -4.71 17.44 16 4 H -0.27 -6.81 7.11 56.52 0.40 -6.41 16 5 H -0.27 -6.82 7.11 56.52 0.40 -6.41 16 6 H -0.24 -6.10 6.74 56.52 0.38 -5.72 16 7 C -0.52 -15.28 10.04 30.94 0.31 -14.97 16 8 H 0.09 2.69 8.03 -52.49 -0.42 2.27 16 9 S -0.14 -3.71 18.55 -107.50 -1.99 -5.70 16 10 C -0.12 -2.47 6.16 36.01 0.22 -2.25 16 11 C 0.53 9.97 7.85 -10.98 -0.09 9.89 16 12 O -0.52 -11.81 15.86 5.56 0.09 -11.72 16 13 N -0.73 -10.11 5.56 -60.29 -0.33 -10.45 16 14 C 0.11 1.37 6.00 -4.04 -0.02 1.35 16 15 C 0.11 1.07 5.34 -4.04 -0.02 1.05 16 16 N -0.60 -5.03 2.44 -173.69 -0.42 -5.46 16 17 C 0.11 0.53 5.62 -4.04 -0.02 0.51 16 18 C 0.06 0.22 7.38 37.16 0.27 0.49 16 19 O -0.57 -3.16 12.48 -35.23 -0.44 -3.60 16 20 C 0.51 4.96 7.67 -10.98 -0.08 4.88 16 21 O -0.53 -7.50 15.56 5.56 0.09 -7.41 16 22 C -0.14 -0.80 4.21 -27.88 -0.12 -0.92 16 23 C -0.08 -0.54 4.78 -26.73 -0.13 -0.67 16 24 C -0.15 -0.87 5.73 -90.61 -0.52 -1.39 16 25 C -0.18 -0.96 10.18 -26.69 -0.27 -1.23 16 26 C -0.18 -1.04 10.26 -26.69 -0.27 -1.32 16 27 H 0.27 7.67 8.31 -40.82 -0.34 7.33 16 28 H 0.10 1.79 8.14 -51.92 -0.42 1.37 16 29 H 0.10 1.84 8.14 -51.92 -0.42 1.42 16 30 H 0.40 4.29 8.47 -40.82 -0.35 3.94 16 31 H 0.07 1.03 8.14 -51.93 -0.42 0.60 16 32 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 33 H 0.09 0.83 7.11 -51.93 -0.37 0.46 16 34 H 0.09 0.97 7.42 -51.93 -0.39 0.59 16 35 H 0.09 0.51 8.07 -51.93 -0.42 0.09 16 36 H 0.10 0.26 6.44 -51.93 -0.33 -0.07 16 37 H 0.06 0.12 8.14 -51.93 -0.42 -0.31 16 38 H 0.05 0.17 7.30 -51.93 -0.38 -0.21 16 39 H 0.38 0.67 9.12 45.56 0.42 1.08 16 40 H 0.09 0.40 7.40 -51.93 -0.38 0.02 16 41 H 0.09 0.36 7.26 -51.93 -0.38 -0.02 16 42 H 0.07 0.59 7.83 -51.93 -0.41 0.19 16 43 H 0.08 0.67 8.10 -51.93 -0.42 0.25 16 44 H 0.10 0.47 8.08 -51.93 -0.42 0.05 16 45 H 0.09 0.51 8.03 -51.93 -0.42 0.09 16 46 H 0.09 0.40 8.14 -51.93 -0.42 -0.03 16 47 H 0.09 0.47 8.14 -51.93 -0.42 0.04 16 48 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16 LS Contribution 411.95 15.07 6.21 6.21 Total: -1.00 -38.69 411.95 -8.79 -47.48 By element: Atomic # 1 Polarization: 8.38 SS G_CDS: -7.20 Total: 1.18 kcal Atomic # 6 Polarization: -1.00 SS G_CDS: -0.84 Total: -1.84 kcal Atomic # 7 Polarization: -42.05 SS G_CDS: 0.02 Total: -42.03 kcal Atomic # 8 Polarization: -22.46 SS G_CDS: -0.27 Total: -22.73 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -4.71 Total: 17.44 kcal Atomic # 16 Polarization: -3.71 SS G_CDS: -1.99 Total: -5.70 kcal Total LS contribution 6.21 Total: 6.21 kcal Total: -38.69 -8.79 -47.48 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001057232791.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.913 kcal (2) G-P(sol) polarization free energy of solvation -38.687 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.599 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.789 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.476 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.389 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds