Wall clock time and date at job start Wed Apr 1 2020 02:55:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86800 * 120.00034 * 2 1 4 4 H 1.48499 * 109.47322 * 359.97438 * 3 2 1 5 5 H 1.48507 * 109.46880 * 119.99859 * 3 2 1 6 6 H 1.48507 * 109.46875 * 239.99483 * 3 2 1 7 7 C 1.38814 * 119.99699 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99774 * 160.27407 * 7 2 1 9 9 N 1.36929 * 120.00125 * 340.27292 * 7 2 1 10 10 C 1.43427 * 120.63644 * 155.71949 * 9 7 2 11 11 C 1.54787 * 116.57743 * 269.49588 * 10 9 7 12 12 C 1.55188 * 108.80074 * 319.48687 * 11 10 9 13 13 O 1.39642 * 110.57162 * 322.08099 * 12 11 10 14 14 C 1.42374 * 108.64286 * 101.16575 * 13 12 11 15 15 H 1.09008 * 108.50928 * 28.49005 * 14 13 12 16 16 C 1.52996 * 108.62327 * 146.33999 * 14 13 12 17 17 N 1.46500 * 109.47218 * 304.24497 * 16 14 13 18 18 C 1.34782 * 120.00136 * 179.97438 * 17 16 14 19 19 O 1.21598 * 119.99755 * 0.02562 * 18 17 16 20 20 C 1.47470 * 120.00127 * 179.97438 * 18 17 16 21 21 C 1.39000 * 120.29031 * 359.72803 * 20 18 17 22 22 C 1.38508 * 120.36262 * 179.74036 * 21 20 18 23 23 C 1.37825 * 120.78986 * 0.56284 * 22 21 20 24 24 C 1.39218 * 120.19800 * 359.69689 * 23 22 21 25 25 N 1.37217 * 133.64798 * 180.02562 * 24 23 22 26 26 H 0.97001 * 125.98337 * 359.94663 * 25 24 23 27 27 N 1.40029 * 108.03376 * 179.97438 * 25 24 23 28 28 C 1.30270 * 109.70340 * 359.97438 * 27 25 24 29 29 C 1.40677 * 119.78984 * 0.02562 * 24 23 22 30 30 C 1.46915 * 113.79259 * 267.46081 * 14 13 12 31 31 H 0.97005 * 119.99480 * 0.02562 * 1 2 3 32 32 H 1.09002 * 108.12268 * 31.11478 * 10 9 7 33 33 H 1.09000 * 108.12645 * 147.59804 * 10 9 7 34 34 H 1.09006 * 109.66283 * 199.66133 * 11 10 9 35 35 H 1.08998 * 109.54928 * 79.25119 * 11 10 9 36 36 H 1.09004 * 109.26188 * 201.79339 * 12 11 10 37 37 H 1.09000 * 109.25505 * 82.35679 * 12 11 10 38 38 H 1.09000 * 109.47135 * 64.24484 * 16 14 13 39 39 H 1.08998 * 109.47511 * 184.24455 * 16 14 13 40 40 H 0.96998 * 119.99969 * 359.97438 * 17 16 14 41 41 H 1.07999 * 119.82151 * 0.02562 * 21 20 18 42 42 H 1.08007 * 119.60567 * 180.25430 * 22 21 20 43 43 H 1.08000 * 119.90513 * 179.71568 * 23 22 21 44 44 H 1.07995 * 125.64492 * 179.97438 * 28 27 25 45 45 H 1.09005 * 109.98585 * 297.48480 * 30 14 13 46 46 H 1.09001 * 109.99701 * 176.11896 * 30 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 1.2853 2.7465 -0.0006 5 1 3.1040 1.6963 1.2126 6 1 3.1041 1.6963 -1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0427 -1.2298 -0.3151 9 7 1.3858 -2.3531 0.4013 10 6 1.8498 -3.6323 -0.0520 11 6 1.2177 -4.1758 -1.3562 12 6 -0.3022 -3.8624 -1.3437 13 8 -0.8237 -4.0130 -0.0571 14 6 -0.9661 -2.7237 0.5299 15 1 -1.1305 -1.9973 -0.2660 16 6 -2.1952 -2.7348 1.4410 17 7 -3.3691 -3.1555 0.6722 18 6 -4.5729 -3.2400 1.2725 19 8 -4.6846 -2.9665 2.4521 20 6 -5.7548 -3.6630 0.4985 21 6 -5.6352 -3.9706 -0.8517 22 6 -6.7432 -4.3732 -1.5788 23 6 -7.9827 -4.4652 -0.9831 24 6 -8.1356 -4.1586 0.3663 25 7 -9.2091 -4.1544 1.2208 26 1 -10.1218 -4.3885 0.9905 27 7 -8.7565 -3.7524 2.4835 28 6 -7.4763 -3.5162 2.4365 29 6 -7.0201 -3.7536 1.1217 30 6 0.1987 -2.2997 1.3186 31 1 -0.4849 0.8401 -0.0004 32 1 2.9271 -3.5676 -0.2047 33 1 1.6682 -4.3590 0.7399 34 1 1.3677 -5.2539 -1.4148 35 1 1.6830 -3.6934 -2.2157 36 1 -0.8155 -4.5443 -2.0218 37 1 -0.4605 -2.8371 -1.6781 38 1 -2.0312 -3.4306 2.2639 39 1 -2.3613 -1.7338 1.8392 40 1 -3.2801 -3.3733 -0.2688 41 1 -4.6723 -3.8997 -1.3355 42 1 -6.6356 -4.6132 -2.6264 43 1 -8.8379 -4.7762 -1.5647 44 1 -6.8654 -3.1911 3.2656 45 1 0.3464 -2.9779 2.1591 46 1 0.0531 -1.2820 1.6808 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001073724633.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:55:51 Heat of formation + Delta-G solvation = 45.789392 kcal Electronic energy + Delta-G solvation = -30317.571240 eV Core-core repulsion = 26209.907083 eV Total energy + Delta-G solvation = -4107.664157 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.164 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -41.68349 -39.62832 -38.74245 -37.04650 -35.05340 -34.56504 -32.77725 -32.20275 -31.24483 -30.17482 -29.77077 -28.52230 -25.73683 -25.33691 -23.95015 -22.67563 -22.56581 -21.65769 -20.82080 -20.41943 -19.60952 -18.32210 -17.12727 -17.05260 -16.45025 -16.07743 -15.57701 -15.23500 -15.21230 -14.96865 -14.69841 -14.59644 -14.34436 -14.17733 -13.90579 -13.56045 -13.17609 -13.01748 -12.62711 -12.33898 -12.20358 -11.99043 -11.94093 -11.88715 -11.42477 -11.24340 -11.10368 -10.84895 -10.76237 -10.50949 -10.48440 -10.19465 -9.98872 -9.77239 -9.66934 -9.52026 -8.91846 -8.82988 -8.72829 -8.51870 -8.25378 -6.84421 -5.93901 -3.32067 0.32538 1.16607 2.36678 2.50029 2.90092 3.33214 3.36255 3.40220 3.42294 3.78537 4.39354 4.42743 4.54225 4.62174 4.67399 4.77066 4.88408 5.02296 5.21912 5.26549 5.41529 5.50451 5.64989 5.69801 5.79345 5.90015 5.97888 5.98672 6.10178 6.11398 6.25800 6.30974 6.39698 6.45870 6.47826 6.54169 6.64626 6.68269 6.79954 6.89154 6.94206 7.03397 7.09719 7.30912 7.37707 7.70475 7.76195 8.10010 8.30545 8.40892 9.05511 9.73722 10.27916 11.15173 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.016232 B = 0.002694 C = 0.002537 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1724.617214 B =10391.350575 C =11032.110585 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.907 5.907 2 C 0.003 3.997 3 Si 0.904 3.096 4 H -0.290 1.290 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.250 4.250 8 H 0.069 0.931 9 N -0.587 5.587 10 C 0.160 3.840 11 C -0.172 4.172 12 C 0.066 3.934 13 O -0.370 6.370 14 C 0.060 3.940 15 H 0.107 0.893 16 C 0.121 3.879 17 N -0.704 5.704 18 C 0.551 3.449 19 O -0.541 6.541 20 C -0.047 4.047 21 C -0.120 4.120 22 C -0.074 4.074 23 C -0.123 4.123 24 C 0.118 3.882 25 N -0.511 5.511 26 H 0.440 0.560 27 N -0.256 5.256 28 C 0.094 3.906 29 C -0.132 4.132 30 C 0.143 3.857 31 H 0.256 0.744 32 H 0.032 0.968 33 H 0.031 0.969 34 H 0.050 0.950 35 H 0.056 0.944 36 H 0.051 0.949 37 H 0.063 0.937 38 H 0.065 0.935 39 H 0.081 0.919 40 H 0.401 0.599 41 H 0.134 0.866 42 H 0.138 0.862 43 H 0.129 0.871 44 H 0.205 0.795 45 H 0.020 0.980 46 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.404 -9.331 -4.178 17.664 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.553 5.553 2 C -0.195 4.195 3 Si 0.734 3.266 4 H -0.216 1.216 5 H -0.211 1.211 6 H -0.211 1.211 7 C -0.379 4.379 8 H 0.087 0.913 9 N -0.307 5.307 10 C 0.031 3.969 11 C -0.213 4.213 12 C -0.011 4.011 13 O -0.288 6.288 14 C 0.001 3.999 15 H 0.125 0.875 16 C -0.003 4.003 17 N -0.354 5.354 18 C 0.337 3.663 19 O -0.419 6.419 20 C -0.053 4.053 21 C -0.140 4.140 22 C -0.095 4.095 23 C -0.146 4.146 24 C 0.001 3.999 25 N -0.226 5.226 26 H 0.285 0.715 27 N -0.070 5.070 28 C -0.102 4.102 29 C -0.141 4.141 30 C 0.018 3.982 31 H 0.066 0.934 32 H 0.050 0.950 33 H 0.050 0.950 34 H 0.069 0.931 35 H 0.075 0.925 36 H 0.069 0.931 37 H 0.081 0.919 38 H 0.083 0.917 39 H 0.099 0.901 40 H 0.236 0.764 41 H 0.152 0.848 42 H 0.155 0.845 43 H 0.147 0.853 44 H 0.221 0.779 45 H 0.038 0.962 46 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -15.635 -9.151 -2.428 18.278 hybrid contribution 0.750 0.818 -1.505 1.870 sum -14.885 -8.332 -3.932 17.506 Atomic orbital electron populations 1.69856 1.05190 1.25857 1.54361 1.24888 0.95299 0.98331 1.00990 0.86340 0.78963 0.83199 0.78098 1.21626 1.21078 1.21065 1.19219 0.93841 0.85273 1.39580 0.91338 1.44119 1.34395 1.01384 1.50836 1.20262 0.95950 0.87782 0.92864 1.23494 0.96994 0.99105 1.01719 1.22359 0.93478 1.00759 0.84553 1.87513 1.83360 1.28962 1.28987 1.22218 0.93927 0.84754 0.98963 0.87540 1.21769 0.83398 1.00475 0.94697 1.45850 1.07688 1.67497 1.14369 1.18084 0.82970 0.78286 0.86953 1.90723 1.85536 1.50031 1.15650 1.19576 0.92050 1.00007 0.93703 1.21225 0.99629 1.00418 0.92772 1.20920 0.91287 0.97211 1.00077 1.20199 0.98729 1.04732 0.90912 1.18826 0.88279 0.99943 0.92834 1.46096 1.09351 1.61382 1.05771 0.71485 1.76813 1.13349 1.16347 1.00528 1.24262 0.91092 0.97436 0.97374 1.18690 0.92910 1.08155 0.94298 1.20753 0.85391 1.01471 0.90587 0.93380 0.94971 0.95030 0.93135 0.92500 0.93071 0.91870 0.91713 0.90067 0.76399 0.84793 0.84460 0.85290 0.77875 0.96184 0.87750 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -23.17 9.59 55.49 0.53 -22.64 16 2 C 0.00 0.07 4.91 -17.43 -0.09 -0.02 16 3 Si 0.90 20.59 29.60 -169.99 -5.03 15.56 16 4 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 5 H -0.28 -6.54 7.11 56.52 0.40 -6.13 16 6 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 7 C -0.25 -6.38 9.62 -15.06 -0.14 -6.53 16 8 H 0.07 1.75 7.88 -52.49 -0.41 1.34 16 9 N -0.59 -13.74 2.62 -174.85 -0.46 -14.20 16 10 C 0.16 3.30 5.28 -4.73 -0.02 3.28 16 11 C -0.17 -3.09 6.74 -24.63 -0.17 -3.26 16 12 C 0.07 1.18 6.38 38.32 0.24 1.42 16 13 O -0.37 -6.88 9.34 -31.94 -0.30 -7.18 16 14 C 0.06 1.17 2.01 -29.65 -0.06 1.11 16 15 H 0.11 2.34 5.25 -51.92 -0.27 2.06 16 16 C 0.12 2.14 5.27 -4.04 -0.02 2.12 16 17 N -0.70 -10.88 5.35 -61.37 -0.33 -11.21 16 18 C 0.55 8.75 7.76 -12.50 -0.10 8.65 16 19 O -0.54 -9.96 14.94 5.28 0.08 -9.88 16 20 C -0.05 -0.63 5.90 -104.68 -0.62 -1.25 16 21 C -0.12 -1.26 9.52 -39.20 -0.37 -1.63 16 22 C -0.07 -0.62 9.99 -39.63 -0.40 -1.01 16 23 C -0.12 -1.05 10.06 -39.37 -0.40 -1.45 16 24 C 0.12 1.31 7.32 -84.17 -0.62 0.70 16 25 N -0.51 -5.27 7.45 32.35 0.24 -5.03 16 26 H 0.44 2.94 8.96 -182.65 -1.64 1.30 16 27 N -0.26 -3.30 12.58 30.81 0.39 -2.92 16 28 C 0.09 1.28 11.23 -17.10 -0.19 1.09 16 29 C -0.13 -1.78 6.00 -106.68 -0.64 -2.42 16 30 C 0.14 3.14 4.71 -4.93 -0.02 3.12 16 31 H 0.26 6.50 8.31 -40.82 -0.34 6.16 16 32 H 0.03 0.66 7.96 -51.93 -0.41 0.24 16 33 H 0.03 0.64 7.99 -51.93 -0.41 0.22 16 34 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 35 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 36 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 37 H 0.06 1.26 6.66 -51.93 -0.35 0.92 16 38 H 0.06 1.17 8.14 -51.93 -0.42 0.74 16 39 H 0.08 1.53 8.14 -51.93 -0.42 1.10 16 40 H 0.40 5.48 6.22 -40.82 -0.25 5.22 16 41 H 0.13 1.20 6.38 -52.49 -0.33 0.86 16 42 H 0.14 0.73 8.06 -52.48 -0.42 0.31 16 43 H 0.13 0.70 8.06 -52.49 -0.42 0.28 16 44 H 0.20 2.73 6.95 -52.49 -0.36 2.37 16 45 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 46 H 0.10 2.53 6.01 -51.93 -0.31 2.21 16 LS Contribution 369.03 15.07 5.56 5.56 Total: -1.00 -29.62 369.03 -10.21 -39.83 By element: Atomic # 1 Polarization: 15.45 SS G_CDS: -7.28 Total: 8.17 kcal Atomic # 6 Polarization: 7.53 SS G_CDS: -3.61 Total: 3.93 kcal Atomic # 7 Polarization: -56.36 SS G_CDS: 0.37 Total: -55.99 kcal Atomic # 8 Polarization: -16.84 SS G_CDS: -0.22 Total: -17.06 kcal Atomic # 14 Polarization: 20.59 SS G_CDS: -5.03 Total: 15.56 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -29.62 -10.21 -39.83 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001073724633.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.617 kcal (2) G-P(sol) polarization free energy of solvation -29.622 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.995 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.206 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.828 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.789 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds