Wall clock time and date at job start Wed Apr 1 2020 02:55:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86800 * 120.00034 * 2 1 4 4 H 1.48499 * 109.47322 * 359.97438 * 3 2 1 5 5 H 1.48507 * 109.46880 * 119.99859 * 3 2 1 6 6 H 1.48507 * 109.46875 * 239.99483 * 3 2 1 7 7 C 1.38814 * 119.99699 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99774 * 160.27407 * 7 2 1 9 9 N 1.36929 * 120.00125 * 340.27292 * 7 2 1 10 10 C 1.43427 * 120.63644 * 155.71949 * 9 7 2 11 11 C 1.54787 * 116.57743 * 269.49588 * 10 9 7 12 12 C 1.55188 * 108.80074 * 319.48687 * 11 10 9 13 13 O 1.39642 * 110.57162 * 322.08099 * 12 11 10 14 14 C 1.42374 * 108.64286 * 101.16575 * 13 12 11 15 15 H 1.09008 * 108.50928 * 28.49005 * 14 13 12 16 16 C 1.52996 * 108.62327 * 146.33999 * 14 13 12 17 17 N 1.46500 * 109.47218 * 304.24497 * 16 14 13 18 18 C 1.34782 * 120.00136 * 179.97438 * 17 16 14 19 19 O 1.21598 * 119.99755 * 0.02562 * 18 17 16 20 20 C 1.47470 * 120.00127 * 179.97438 * 18 17 16 21 21 C 1.39000 * 120.29031 * 359.72803 * 20 18 17 22 22 C 1.38508 * 120.36262 * 179.74036 * 21 20 18 23 23 C 1.37825 * 120.78986 * 0.56284 * 22 21 20 24 24 C 1.39218 * 120.19800 * 359.69689 * 23 22 21 25 25 N 1.37217 * 133.64798 * 180.02562 * 24 23 22 26 26 H 0.97001 * 125.98337 * 359.94663 * 25 24 23 27 27 N 1.40029 * 108.03376 * 179.97438 * 25 24 23 28 28 C 1.30270 * 109.70340 * 359.97438 * 27 25 24 29 29 C 1.40677 * 119.78984 * 0.02562 * 24 23 22 30 30 C 1.46915 * 113.79259 * 267.46081 * 14 13 12 31 31 H 0.97005 * 119.99480 * 0.02562 * 1 2 3 32 32 H 1.09002 * 108.12268 * 31.11478 * 10 9 7 33 33 H 1.09000 * 108.12645 * 147.59804 * 10 9 7 34 34 H 1.09006 * 109.66283 * 199.66133 * 11 10 9 35 35 H 1.08998 * 109.54928 * 79.25119 * 11 10 9 36 36 H 1.09004 * 109.26188 * 201.79339 * 12 11 10 37 37 H 1.09000 * 109.25505 * 82.35679 * 12 11 10 38 38 H 1.09000 * 109.47135 * 64.24484 * 16 14 13 39 39 H 1.08998 * 109.47511 * 184.24455 * 16 14 13 40 40 H 0.96998 * 119.99969 * 359.97438 * 17 16 14 41 41 H 1.07999 * 119.82151 * 0.02562 * 21 20 18 42 42 H 1.08007 * 119.60567 * 180.25430 * 22 21 20 43 43 H 1.08000 * 119.90513 * 179.71568 * 23 22 21 44 44 H 1.07995 * 125.64492 * 179.97438 * 28 27 25 45 45 H 1.09005 * 109.98585 * 297.48480 * 30 14 13 46 46 H 1.09001 * 109.99701 * 176.11896 * 30 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 1.2853 2.7465 -0.0006 5 1 3.1040 1.6963 1.2126 6 1 3.1041 1.6963 -1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0427 -1.2298 -0.3151 9 7 1.3858 -2.3531 0.4013 10 6 1.8498 -3.6323 -0.0520 11 6 1.2177 -4.1758 -1.3562 12 6 -0.3022 -3.8624 -1.3437 13 8 -0.8237 -4.0130 -0.0571 14 6 -0.9661 -2.7237 0.5299 15 1 -1.1305 -1.9973 -0.2660 16 6 -2.1952 -2.7348 1.4410 17 7 -3.3691 -3.1555 0.6722 18 6 -4.5729 -3.2400 1.2725 19 8 -4.6846 -2.9665 2.4521 20 6 -5.7548 -3.6630 0.4985 21 6 -5.6352 -3.9706 -0.8517 22 6 -6.7432 -4.3732 -1.5788 23 6 -7.9827 -4.4652 -0.9831 24 6 -8.1356 -4.1586 0.3663 25 7 -9.2091 -4.1544 1.2208 26 1 -10.1218 -4.3885 0.9905 27 7 -8.7565 -3.7524 2.4835 28 6 -7.4763 -3.5162 2.4365 29 6 -7.0201 -3.7536 1.1217 30 6 0.1987 -2.2997 1.3186 31 1 -0.4849 0.8401 -0.0004 32 1 2.9271 -3.5676 -0.2047 33 1 1.6682 -4.3590 0.7399 34 1 1.3677 -5.2539 -1.4148 35 1 1.6830 -3.6934 -2.2157 36 1 -0.8155 -4.5443 -2.0218 37 1 -0.4605 -2.8371 -1.6781 38 1 -2.0312 -3.4306 2.2639 39 1 -2.3613 -1.7338 1.8392 40 1 -3.2801 -3.3733 -0.2688 41 1 -4.6723 -3.8997 -1.3355 42 1 -6.6356 -4.6132 -2.6264 43 1 -8.8379 -4.7762 -1.5647 44 1 -6.8654 -3.1911 3.2656 45 1 0.3464 -2.9779 2.1591 46 1 0.0531 -1.2820 1.6808 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001073724633.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:55:50 Heat of formation + Delta-G solvation = 26.434050 kcal Electronic energy + Delta-G solvation = -30318.410551 eV Core-core repulsion = 26209.907083 eV Total energy + Delta-G solvation = -4108.503467 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.164 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -42.56194 -41.00376 -40.14080 -37.90678 -36.77991 -35.96836 -33.92820 -33.58159 -32.91942 -31.08934 -30.76357 -30.00489 -27.21955 -27.03566 -25.11133 -24.03843 -23.51046 -22.67298 -22.30561 -21.60679 -21.25038 -19.39875 -18.84705 -17.98666 -17.65776 -17.42881 -16.92652 -16.62589 -16.37498 -16.13415 -15.90471 -15.71648 -15.65686 -15.53550 -15.46876 -14.79948 -14.46597 -14.42002 -14.18430 -13.89979 -13.55570 -13.26435 -12.96158 -12.91131 -12.77230 -12.72261 -12.58066 -12.47986 -12.28944 -12.03149 -11.90540 -11.74683 -11.37838 -11.34248 -11.16375 -10.97012 -10.52782 -10.24584 -10.09798 -9.72178 -9.08807 -8.69919 -7.87519 -5.27460 -0.55261 0.37103 1.39574 1.49482 1.53793 1.58365 1.73736 1.88087 2.15085 2.54203 2.84797 3.14291 3.29762 3.50281 3.56558 3.64678 3.84386 3.98250 4.01341 4.19165 4.30060 4.32066 4.41683 4.44935 4.56394 4.61492 4.74079 4.78772 4.82361 4.83511 4.86960 4.99352 5.10945 5.21971 5.22289 5.22851 5.31990 5.37271 5.38831 5.41601 5.45844 5.53613 5.70566 5.72909 6.30198 6.38510 6.52343 6.54560 6.57579 7.13022 7.20132 7.85688 8.38487 9.18108 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.016232 B = 0.002694 C = 0.002537 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1724.617214 B =10391.350575 C =11032.110585 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C -0.035 4.035 3 Si 0.957 3.043 4 H -0.294 1.294 5 H -0.287 1.287 6 H -0.281 1.281 7 C -0.264 4.264 8 H 0.063 0.937 9 N -0.601 5.601 10 C 0.153 3.847 11 C -0.165 4.165 12 C 0.066 3.934 13 O -0.366 6.366 14 C 0.081 3.919 15 H 0.086 0.914 16 C 0.133 3.867 17 N -0.698 5.698 18 C 0.548 3.452 19 O -0.577 6.577 20 C -0.080 4.080 21 C -0.108 4.108 22 C -0.070 4.070 23 C -0.104 4.104 24 C 0.111 3.889 25 N -0.496 5.496 26 H 0.456 0.544 27 N -0.270 5.270 28 C 0.071 3.929 29 C -0.159 4.159 30 C 0.144 3.856 31 H 0.251 0.749 32 H 0.029 0.971 33 H 0.034 0.966 34 H 0.079 0.921 35 H 0.054 0.946 36 H 0.091 0.909 37 H 0.037 0.963 38 H 0.060 0.940 39 H 0.064 0.936 40 H 0.410 0.590 41 H 0.149 0.851 42 H 0.180 0.820 43 H 0.170 0.830 44 H 0.192 0.808 45 H 0.024 0.976 46 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.758 -11.060 -7.070 20.509 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.231 4.231 3 Si 0.786 3.214 4 H -0.221 1.221 5 H -0.214 1.214 6 H -0.207 1.207 7 C -0.394 4.394 8 H 0.080 0.920 9 N -0.323 5.323 10 C 0.025 3.975 11 C -0.206 4.206 12 C -0.011 4.011 13 O -0.285 6.285 14 C 0.022 3.978 15 H 0.103 0.897 16 C 0.008 3.992 17 N -0.349 5.349 18 C 0.337 3.663 19 O -0.458 6.458 20 C -0.086 4.086 21 C -0.128 4.128 22 C -0.090 4.090 23 C -0.126 4.126 24 C -0.007 4.007 25 N -0.214 5.214 26 H 0.304 0.696 27 N -0.086 5.086 28 C -0.123 4.123 29 C -0.168 4.168 30 C 0.019 3.981 31 H 0.060 0.940 32 H 0.047 0.953 33 H 0.052 0.948 34 H 0.097 0.903 35 H 0.072 0.928 36 H 0.109 0.891 37 H 0.056 0.944 38 H 0.078 0.922 39 H 0.082 0.918 40 H 0.248 0.752 41 H 0.166 0.834 42 H 0.197 0.803 43 H 0.188 0.812 44 H 0.208 0.792 45 H 0.042 0.958 46 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -16.996 -10.911 -5.349 20.894 hybrid contribution 1.152 1.283 -0.667 1.848 sum -15.845 -9.628 -6.016 19.492 Atomic orbital electron populations 1.69983 1.05758 1.25760 1.54609 1.25439 0.96029 1.00400 1.01264 0.85511 0.77767 0.80263 0.77809 1.22061 1.21366 1.20675 1.19352 0.93825 0.86446 1.39741 0.91973 1.44230 1.34802 1.01837 1.51388 1.20384 0.96017 0.86694 0.94376 1.23408 0.96843 1.00629 0.99712 1.22434 0.93781 1.00360 0.84535 1.87514 1.83380 1.27993 1.29583 1.21741 0.93392 0.84707 0.97975 0.89663 1.21417 0.83856 0.99496 0.94421 1.45684 1.07008 1.67538 1.14637 1.18584 0.83597 0.77337 0.86779 1.90696 1.86081 1.51654 1.17369 1.19392 0.90801 1.03473 0.94920 1.21546 1.01318 0.98447 0.91476 1.21403 0.90154 0.95731 1.01732 1.20741 1.00271 1.01961 0.89616 1.19124 0.87459 1.00235 0.93853 1.46074 1.10124 1.60377 1.04822 0.69558 1.76714 1.13057 1.16676 1.02124 1.24149 0.91513 0.98793 0.97847 1.18891 0.93979 1.09407 0.94526 1.20676 0.86267 1.00140 0.91012 0.93965 0.95296 0.94796 0.90278 0.92765 0.89108 0.94422 0.92183 0.91817 0.75215 0.83356 0.80311 0.81225 0.79167 0.95804 0.90354 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -47.77 9.59 21.65 0.21 -47.56 16 2 C -0.03 -1.79 4.91 84.86 0.42 -1.38 16 3 Si 0.96 42.83 29.60 68.60 2.03 44.86 16 4 H -0.29 -13.28 7.11 99.48 0.71 -12.57 16 5 H -0.29 -12.88 7.11 99.48 0.71 -12.18 16 6 H -0.28 -12.31 7.11 99.48 0.71 -11.60 16 7 C -0.26 -13.65 9.62 84.04 0.81 -12.84 16 8 H 0.06 3.22 7.88 -2.91 -0.02 3.20 16 9 N -0.60 -28.44 2.62 -707.11 -1.86 -30.29 16 10 C 0.15 6.20 5.28 87.56 0.46 6.67 16 11 C -0.17 -5.59 6.74 31.95 0.22 -5.38 16 12 C 0.07 2.22 6.38 72.73 0.46 2.68 16 13 O -0.37 -13.16 9.34 -137.21 -1.28 -14.44 16 14 C 0.08 3.19 2.01 28.71 0.06 3.25 16 15 H 0.09 3.81 5.25 -2.38 -0.01 3.80 16 16 C 0.13 4.88 5.27 86.38 0.45 5.33 16 17 N -0.70 -21.76 5.35 -466.33 -2.49 -24.26 16 18 C 0.55 17.95 7.76 86.68 0.67 18.63 16 19 O -0.58 -22.59 14.94 -4.02 -0.06 -22.65 16 20 C -0.08 -2.11 5.90 -19.90 -0.12 -2.22 16 21 C -0.11 -1.96 9.52 22.52 0.21 -1.75 16 22 C -0.07 -0.83 9.99 22.24 0.22 -0.61 16 23 C -0.10 -1.30 10.06 22.41 0.23 -1.08 16 24 C 0.11 2.23 7.32 39.13 0.29 2.51 16 25 N -0.50 -9.46 7.45 -51.56 -0.38 -9.85 16 26 H 0.46 5.05 8.96 -213.36 -1.91 3.14 16 27 N -0.27 -7.05 12.58 -56.45 -0.71 -7.76 16 28 C 0.07 2.05 11.23 85.65 0.96 3.02 16 29 C -0.16 -4.29 6.00 -21.20 -0.13 -4.42 16 30 C 0.14 6.49 4.71 83.78 0.39 6.88 16 31 H 0.25 13.01 8.31 -92.70 -0.77 12.24 16 32 H 0.03 1.17 7.96 -2.39 -0.02 1.15 16 33 H 0.03 1.34 7.99 -2.39 -0.02 1.32 16 34 H 0.08 2.25 8.14 -2.38 -0.02 2.23 16 35 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 36 H 0.09 2.35 8.14 -2.38 -0.02 2.33 16 37 H 0.04 1.47 6.66 -2.39 -0.02 1.45 16 38 H 0.06 2.24 8.14 -2.39 -0.02 2.22 16 39 H 0.06 2.55 8.14 -2.39 -0.02 2.53 16 40 H 0.41 10.86 6.22 -92.71 -0.58 10.28 16 41 H 0.15 2.19 6.38 -2.91 -0.02 2.17 16 42 H 0.18 0.72 8.06 -2.91 -0.02 0.70 16 43 H 0.17 0.78 8.06 -2.91 -0.02 0.75 16 44 H 0.19 5.73 6.95 -2.91 -0.02 5.71 16 45 H 0.02 1.04 8.14 -2.38 -0.02 1.02 16 46 H 0.08 3.95 6.01 -2.39 -0.01 3.94 16 Total: -1.00 -66.61 369.03 -0.38 -66.99 By element: Atomic # 1 Polarization: 27.11 SS G_CDS: -1.44 Total: 25.67 kcal Atomic # 6 Polarization: 13.69 SS G_CDS: 5.61 Total: 19.31 kcal Atomic # 7 Polarization: -114.48 SS G_CDS: -5.24 Total: -119.72 kcal Atomic # 8 Polarization: -35.75 SS G_CDS: -1.34 Total: -37.10 kcal Atomic # 14 Polarization: 42.83 SS G_CDS: 2.03 Total: 44.86 kcal Total: -66.61 -0.38 -66.99 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001073724633.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.423 kcal (2) G-P(sol) polarization free energy of solvation -66.610 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.813 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.379 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.988 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.434 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds