Wall clock time and date at job start Wed Apr 1 2020 02:34:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31612 * 1 3 3 Si 1.86802 * 119.99772 * 2 1 4 4 H 1.48501 * 109.46977 * 359.97438 * 3 2 1 5 5 H 1.48494 * 109.47193 * 120.00236 * 3 2 1 6 6 H 1.48504 * 109.47141 * 240.00197 * 3 2 1 7 7 C 1.38811 * 120.00330 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00014 * 196.68601 * 7 2 1 9 9 N 1.36936 * 119.99752 * 16.68411 * 7 2 1 10 10 C 1.44466 * 118.50838 * 206.74194 * 9 7 2 11 11 C 1.54872 * 109.32327 * 268.93118 * 10 9 7 12 12 C 1.47689 * 109.68365 * 290.10344 * 11 10 9 13 13 O 1.42559 * 113.66130 * 60.80369 * 12 11 10 14 14 C 1.40525 * 113.54265 * 272.23851 * 13 12 11 15 15 H 1.09004 * 109.40713 * 335.17327 * 14 13 12 16 16 C 1.52996 * 109.40892 * 215.40978 * 14 13 12 17 17 N 1.46502 * 109.47102 * 65.00472 * 16 14 13 18 18 C 1.34773 * 120.00551 * 180.02562 * 17 16 14 19 19 O 1.21796 * 119.99731 * 359.97438 * 18 17 16 20 20 C 1.41692 * 120.00505 * 179.97438 * 18 17 16 21 21 C 1.39183 * 125.87531 * 180.02562 * 20 18 17 22 22 C 1.38086 * 107.67683 * 179.97438 * 21 20 18 23 23 C 1.39511 * 107.56828 * 359.97438 * 22 21 20 24 24 C 1.40614 * 132.40922 * 180.02562 * 23 22 21 25 25 C 1.36300 * 119.15764 * 179.33754 * 24 23 22 26 26 C 1.39967 * 120.03604 * 0.53297 * 25 24 23 27 27 N 1.30648 * 120.99664 * 359.67260 * 26 25 24 28 28 N 1.37155 * 108.20330 * 359.77766 * 23 22 21 29 29 C 1.48174 * 118.51489 * 26.47228 * 9 7 2 30 30 H 0.97005 * 120.00586 * 0.02562 * 1 2 3 31 31 H 1.08994 * 109.50023 * 28.88684 * 10 9 7 32 32 H 1.09002 * 109.49178 * 148.95145 * 10 9 7 33 33 H 1.09001 * 109.43937 * 50.16979 * 11 10 9 34 34 H 1.09004 * 109.43533 * 170.04109 * 11 10 9 35 35 H 1.09003 * 108.64822 * 181.87923 * 12 11 10 36 36 H 1.08994 * 108.64533 * 299.85603 * 12 11 10 37 37 H 1.09001 * 109.47547 * 185.00290 * 16 14 13 38 38 H 1.09003 * 109.47473 * 305.00228 * 16 14 13 39 39 H 0.97006 * 119.99630 * 0.02562 * 17 16 14 40 40 H 1.07991 * 126.16446 * 359.93277 * 21 20 18 41 41 H 1.07998 * 126.21853 * 180.02562 * 22 21 20 42 42 H 1.08000 * 120.42658 * 359.97438 * 24 23 22 43 43 H 1.08007 * 119.98285 * 180.18321 * 25 24 23 44 44 H 1.08003 * 119.50754 * 179.65156 * 26 25 24 45 45 H 1.09004 * 109.23394 * 259.08733 * 29 9 7 46 46 H 1.09003 * 109.23586 * 18.46063 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 1.2850 2.7465 -0.0006 5 1 3.1038 1.6965 1.2124 6 1 3.1038 1.6965 -1.2125 7 6 2.0102 -1.2021 -0.0005 8 1 3.0562 -1.2219 0.2680 9 7 1.3688 -2.3629 -0.3415 10 6 1.8650 -3.6085 0.1964 11 6 2.9032 -4.2117 -0.7817 12 6 2.2209 -4.6796 -2.0051 13 8 1.5462 -3.6441 -2.7155 14 6 0.2279 -3.4304 -2.2783 15 1 -0.1537 -4.3423 -1.8189 16 6 -0.6508 -3.0598 -3.4747 17 7 -0.7267 -4.1967 -4.3956 18 6 -1.4508 -4.0995 -5.5281 19 8 -2.0425 -3.0665 -5.7858 20 6 -1.5238 -5.1988 -6.4190 21 6 -2.2315 -5.2323 -7.6170 22 6 -2.0440 -6.4791 -8.1801 23 6 -1.2189 -7.2083 -7.3235 24 6 -0.7043 -8.5153 -7.3873 25 6 0.1053 -8.9599 -6.3850 26 6 0.4060 -8.1231 -5.3040 27 7 -0.0735 -6.9096 -5.2388 28 7 -0.9031 -6.4122 -6.2522 29 6 0.1937 -2.2839 -1.2406 30 1 -0.4851 0.8400 -0.0004 31 1 2.3377 -3.4255 1.1613 32 1 1.0366 -4.3054 0.3235 33 1 3.6384 -3.4511 -1.0448 34 1 3.4068 -5.0518 -0.3034 35 1 2.9610 -5.1305 -2.6662 36 1 1.4923 -5.4414 -1.7280 37 1 -1.6522 -2.8074 -3.1258 38 1 -0.2191 -2.2023 -3.9909 39 1 -0.2558 -5.0195 -4.1901 40 1 -2.8216 -4.4283 -8.0312 41 1 -2.4597 -6.8264 -9.1144 42 1 -0.9389 -9.1552 -8.2251 43 1 0.5103 -9.9604 -6.4220 44 1 1.0438 -8.4862 -4.5116 45 1 -0.7179 -2.3586 -0.6476 46 1 0.2043 -1.3268 -1.7623 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001073804336.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:34:19 Heat of formation + Delta-G solvation = 62.879017 kcal Electronic energy + Delta-G solvation = -30488.796549 eV Core-core repulsion = 26381.873454 eV Total energy + Delta-G solvation = -4106.923095 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.164 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -42.26840 -39.49151 -38.64245 -37.42580 -35.11361 -34.57846 -33.71438 -32.47173 -31.08211 -30.74781 -29.54877 -28.36787 -25.82370 -25.33054 -24.71014 -23.50675 -22.49914 -21.27698 -20.91421 -20.47766 -19.72882 -18.51007 -17.53758 -16.91405 -16.33156 -16.27066 -16.04541 -15.96883 -15.66887 -14.96670 -14.83569 -14.48913 -14.15860 -13.97831 -13.87359 -13.48241 -13.32642 -12.94536 -12.83000 -12.58209 -12.53503 -12.41173 -12.28650 -12.13226 -11.72745 -11.15737 -11.12009 -10.95378 -10.80551 -10.68172 -10.57409 -10.19898 -10.06795 -9.96980 -9.80496 -9.62678 -9.20636 -8.82746 -8.77483 -8.36055 -8.04869 -6.65806 -5.74437 -3.17275 0.06698 0.67677 1.58132 2.06092 2.88295 3.41896 3.46401 3.49428 3.50438 3.51604 3.83071 4.10862 4.22589 4.33586 4.49708 4.55232 4.87741 4.97435 5.06969 5.20059 5.27675 5.40216 5.43254 5.48956 5.59965 5.60845 5.66554 5.74886 5.80269 5.86959 5.92950 6.07072 6.15914 6.25620 6.29305 6.36397 6.41331 6.46718 6.52493 6.73021 6.78896 6.99854 7.21218 7.22881 7.59755 7.77108 7.85418 8.02406 8.39414 8.50292 9.25281 9.92155 10.36848 11.33525 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.016674 B = 0.002926 C = 0.002578 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1678.845775 B = 9568.498374 C =10859.480828 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.006 3.994 3 Si 0.901 3.099 4 H -0.290 1.290 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.257 4.257 8 H 0.064 0.936 9 N -0.585 5.585 10 C 0.158 3.842 11 C -0.183 4.183 12 C 0.081 3.919 13 O -0.359 6.359 14 C 0.057 3.943 15 H 0.045 0.955 16 C 0.123 3.877 17 N -0.715 5.715 18 C 0.580 3.420 19 O -0.539 6.539 20 C -0.017 4.017 21 C -0.081 4.081 22 C -0.171 4.171 23 C -0.001 4.001 24 C -0.008 4.008 25 C -0.203 4.203 26 C 0.141 3.859 27 N -0.277 5.277 28 N -0.235 5.235 29 C 0.167 3.833 30 H 0.255 0.745 31 H 0.050 0.950 32 H 0.027 0.973 33 H 0.070 0.930 34 H 0.057 0.943 35 H 0.064 0.936 36 H 0.033 0.967 37 H 0.082 0.918 38 H 0.079 0.921 39 H 0.407 0.593 40 H 0.167 0.833 41 H 0.157 0.843 42 H 0.155 0.845 43 H 0.151 0.849 44 H 0.198 0.802 45 H 0.038 0.962 46 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.412 -22.475 -14.247 26.647 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.193 4.193 3 Si 0.731 3.269 4 H -0.216 1.216 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.387 4.387 8 H 0.081 0.919 9 N -0.306 5.306 10 C 0.029 3.971 11 C -0.224 4.224 12 C 0.004 3.996 13 O -0.277 6.277 14 C -0.003 4.003 15 H 0.063 0.937 16 C -0.001 4.001 17 N -0.368 5.368 18 C 0.368 3.632 19 O -0.417 6.417 20 C -0.134 4.134 21 C -0.106 4.106 22 C -0.197 4.197 23 C -0.113 4.113 24 C -0.035 4.035 25 C -0.226 4.226 26 C -0.051 4.051 27 N -0.087 5.087 28 N 0.001 4.999 29 C 0.041 3.959 30 H 0.065 0.935 31 H 0.069 0.931 32 H 0.046 0.954 33 H 0.089 0.911 34 H 0.076 0.924 35 H 0.082 0.918 36 H 0.051 0.949 37 H 0.100 0.900 38 H 0.097 0.903 39 H 0.244 0.756 40 H 0.185 0.815 41 H 0.175 0.825 42 H 0.173 0.827 43 H 0.169 0.831 44 H 0.214 0.786 45 H 0.056 0.944 46 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -1.678 -20.645 -13.618 24.789 hybrid contribution 0.712 -0.467 -0.201 0.875 sum -0.967 -21.112 -13.820 25.251 Atomic orbital electron populations 1.70020 1.05211 1.25707 1.53944 1.25001 0.95269 0.98373 1.00631 0.86392 0.78977 0.83453 0.78068 1.21622 1.20988 1.21007 1.19114 0.92667 0.85204 1.41675 0.91869 1.43564 1.33579 1.01957 1.51483 1.20662 0.93852 0.88148 0.94418 1.22305 1.01308 1.00708 0.98061 1.21269 0.95580 0.88702 0.94062 1.87435 1.25622 1.56683 1.57939 1.23206 0.82720 1.00133 0.94229 0.93669 1.21612 0.99956 0.88899 0.89616 1.46150 1.50489 1.18449 1.21692 1.15750 0.80137 0.86262 0.81091 1.90881 1.46360 1.29193 1.75280 1.19690 1.06850 0.85165 1.01700 1.21368 0.99088 0.98091 0.92064 1.21070 1.03428 0.94113 1.01087 1.19430 1.05787 0.93669 0.92379 1.20948 0.92084 0.92042 0.98411 1.21439 1.02975 1.02558 0.95630 1.24045 0.94428 0.88527 0.98097 1.75505 1.07564 1.16169 1.09445 1.45797 1.29807 1.11066 1.13230 1.21686 0.89497 0.95757 0.88952 0.93518 0.93148 0.95430 0.91139 0.92428 0.91761 0.94882 0.89992 0.90296 0.75594 0.81541 0.82536 0.82700 0.83127 0.78592 0.94409 0.89971 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.45 11.08 55.49 0.62 -25.83 16 2 C 0.01 0.16 4.85 -17.43 -0.08 0.08 16 3 Si 0.90 22.33 29.59 -169.99 -5.03 17.30 16 4 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 5 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 6 H -0.28 -7.05 7.11 56.52 0.40 -6.65 16 7 C -0.26 -7.14 9.42 -15.06 -0.14 -7.28 16 8 H 0.06 1.74 7.88 -52.49 -0.41 1.33 16 9 N -0.58 -14.72 2.58 -171.25 -0.44 -15.16 16 10 C 0.16 3.28 5.68 -4.14 -0.02 3.26 16 11 C -0.18 -3.24 6.03 -28.31 -0.17 -3.41 16 12 C 0.08 1.35 6.04 34.59 0.21 1.56 16 13 O -0.36 -7.25 9.78 -34.09 -0.33 -7.58 16 14 C 0.06 1.13 2.35 -25.85 -0.06 1.07 16 15 H 0.05 0.83 7.20 -51.93 -0.37 0.46 16 16 C 0.12 2.34 5.24 -4.04 -0.02 2.32 16 17 N -0.71 -12.44 5.49 -63.20 -0.35 -12.79 16 18 C 0.58 10.32 7.60 -14.94 -0.11 10.21 16 19 O -0.54 -11.03 16.79 5.10 0.09 -10.95 16 20 C -0.02 -0.25 6.84 -83.75 -0.57 -0.83 16 21 C -0.08 -0.98 10.49 -39.29 -0.41 -1.40 16 22 C -0.17 -1.62 10.92 -39.16 -0.43 -2.04 16 23 C 0.00 -0.01 6.80 -84.11 -0.57 -0.58 16 24 C -0.01 -0.05 10.12 -39.38 -0.40 -0.45 16 25 C -0.20 -1.07 10.04 -39.63 -0.40 -1.46 16 26 C 0.14 1.00 11.29 -17.41 -0.20 0.80 16 27 N -0.28 -3.20 9.68 30.61 0.30 -2.91 16 28 N -0.24 -3.03 4.01 -8.28 -0.03 -3.06 16 29 C 0.17 4.04 4.54 -2.24 -0.01 4.03 16 30 H 0.25 7.27 8.31 -40.82 -0.34 6.93 16 31 H 0.05 1.06 7.97 -51.93 -0.41 0.64 16 32 H 0.03 0.54 8.10 -51.93 -0.42 0.12 16 33 H 0.07 1.41 8.14 -51.93 -0.42 0.98 16 34 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 35 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 36 H 0.03 0.50 7.27 -51.93 -0.38 0.12 16 37 H 0.08 1.55 8.14 -51.93 -0.42 1.13 16 38 H 0.08 1.64 8.14 -51.93 -0.42 1.22 16 39 H 0.41 6.58 6.06 -40.82 -0.25 6.33 16 40 H 0.17 1.79 8.06 -52.49 -0.42 1.37 16 41 H 0.16 0.94 8.06 -52.49 -0.42 0.51 16 42 H 0.16 0.44 8.06 -52.49 -0.42 0.01 16 43 H 0.15 0.27 8.06 -52.48 -0.42 -0.15 16 44 H 0.20 0.63 8.06 -52.48 -0.42 0.21 16 45 H 0.04 0.97 8.02 -51.93 -0.42 0.55 16 46 H 0.08 2.24 6.31 -51.93 -0.33 1.91 16 LS Contribution 376.67 15.07 5.68 5.68 Total: -1.00 -35.56 376.67 -9.26 -44.82 By element: Atomic # 1 Polarization: 10.97 SS G_CDS: -6.35 Total: 4.62 kcal Atomic # 6 Polarization: 9.27 SS G_CDS: -3.39 Total: 5.87 kcal Atomic # 7 Polarization: -59.85 SS G_CDS: 0.09 Total: -59.76 kcal Atomic # 8 Polarization: -18.28 SS G_CDS: -0.25 Total: -18.53 kcal Atomic # 14 Polarization: 22.33 SS G_CDS: -5.03 Total: 17.30 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -35.56 -9.26 -44.82 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001073804336.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.696 kcal (2) G-P(sol) polarization free energy of solvation -35.559 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.137 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.258 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.817 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.879 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds