Wall clock time and date at job start Wed Apr 1 2020 02:34:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31612 * 1 3 3 Si 1.86802 * 119.99772 * 2 1 4 4 H 1.48501 * 109.46977 * 359.97438 * 3 2 1 5 5 H 1.48494 * 109.47193 * 120.00236 * 3 2 1 6 6 H 1.48504 * 109.47141 * 240.00197 * 3 2 1 7 7 C 1.38811 * 120.00330 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00014 * 196.68601 * 7 2 1 9 9 N 1.36936 * 119.99752 * 16.68411 * 7 2 1 10 10 C 1.44466 * 118.50838 * 206.74194 * 9 7 2 11 11 C 1.54872 * 109.32327 * 268.93118 * 10 9 7 12 12 C 1.47689 * 109.68365 * 290.10344 * 11 10 9 13 13 O 1.42559 * 113.66130 * 60.80369 * 12 11 10 14 14 C 1.40525 * 113.54265 * 272.23851 * 13 12 11 15 15 H 1.09004 * 109.40713 * 335.17327 * 14 13 12 16 16 C 1.52996 * 109.40892 * 215.40978 * 14 13 12 17 17 N 1.46502 * 109.47102 * 65.00472 * 16 14 13 18 18 C 1.34773 * 120.00551 * 180.02562 * 17 16 14 19 19 O 1.21796 * 119.99731 * 359.97438 * 18 17 16 20 20 C 1.41692 * 120.00505 * 179.97438 * 18 17 16 21 21 C 1.39183 * 125.87531 * 180.02562 * 20 18 17 22 22 C 1.38086 * 107.67683 * 179.97438 * 21 20 18 23 23 C 1.39511 * 107.56828 * 359.97438 * 22 21 20 24 24 C 1.40614 * 132.40922 * 180.02562 * 23 22 21 25 25 C 1.36300 * 119.15764 * 179.33754 * 24 23 22 26 26 C 1.39967 * 120.03604 * 0.53297 * 25 24 23 27 27 N 1.30648 * 120.99664 * 359.67260 * 26 25 24 28 28 N 1.37155 * 108.20330 * 359.77766 * 23 22 21 29 29 C 1.48174 * 118.51489 * 26.47228 * 9 7 2 30 30 H 0.97005 * 120.00586 * 0.02562 * 1 2 3 31 31 H 1.08994 * 109.50023 * 28.88684 * 10 9 7 32 32 H 1.09002 * 109.49178 * 148.95145 * 10 9 7 33 33 H 1.09001 * 109.43937 * 50.16979 * 11 10 9 34 34 H 1.09004 * 109.43533 * 170.04109 * 11 10 9 35 35 H 1.09003 * 108.64822 * 181.87923 * 12 11 10 36 36 H 1.08994 * 108.64533 * 299.85603 * 12 11 10 37 37 H 1.09001 * 109.47547 * 185.00290 * 16 14 13 38 38 H 1.09003 * 109.47473 * 305.00228 * 16 14 13 39 39 H 0.97006 * 119.99630 * 0.02562 * 17 16 14 40 40 H 1.07991 * 126.16446 * 359.93277 * 21 20 18 41 41 H 1.07998 * 126.21853 * 180.02562 * 22 21 20 42 42 H 1.08000 * 120.42658 * 359.97438 * 24 23 22 43 43 H 1.08007 * 119.98285 * 180.18321 * 25 24 23 44 44 H 1.08003 * 119.50754 * 179.65156 * 26 25 24 45 45 H 1.09004 * 109.23394 * 259.08733 * 29 9 7 46 46 H 1.09003 * 109.23586 * 18.46063 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 1.2850 2.7465 -0.0006 5 1 3.1038 1.6965 1.2124 6 1 3.1038 1.6965 -1.2125 7 6 2.0102 -1.2021 -0.0005 8 1 3.0562 -1.2219 0.2680 9 7 1.3688 -2.3629 -0.3415 10 6 1.8650 -3.6085 0.1964 11 6 2.9032 -4.2117 -0.7817 12 6 2.2209 -4.6796 -2.0051 13 8 1.5462 -3.6441 -2.7155 14 6 0.2279 -3.4304 -2.2783 15 1 -0.1537 -4.3423 -1.8189 16 6 -0.6508 -3.0598 -3.4747 17 7 -0.7267 -4.1967 -4.3956 18 6 -1.4508 -4.0995 -5.5281 19 8 -2.0425 -3.0665 -5.7858 20 6 -1.5238 -5.1988 -6.4190 21 6 -2.2315 -5.2323 -7.6170 22 6 -2.0440 -6.4791 -8.1801 23 6 -1.2189 -7.2083 -7.3235 24 6 -0.7043 -8.5153 -7.3873 25 6 0.1053 -8.9599 -6.3850 26 6 0.4060 -8.1231 -5.3040 27 7 -0.0735 -6.9096 -5.2388 28 7 -0.9031 -6.4122 -6.2522 29 6 0.1937 -2.2839 -1.2406 30 1 -0.4851 0.8400 -0.0004 31 1 2.3377 -3.4255 1.1613 32 1 1.0366 -4.3054 0.3235 33 1 3.6384 -3.4511 -1.0448 34 1 3.4068 -5.0518 -0.3034 35 1 2.9610 -5.1305 -2.6662 36 1 1.4923 -5.4414 -1.7280 37 1 -1.6522 -2.8074 -3.1258 38 1 -0.2191 -2.2023 -3.9909 39 1 -0.2558 -5.0195 -4.1901 40 1 -2.8216 -4.4283 -8.0312 41 1 -2.4597 -6.8264 -9.1144 42 1 -0.9389 -9.1552 -8.2251 43 1 0.5103 -9.9604 -6.4220 44 1 1.0438 -8.4862 -4.5116 45 1 -0.7179 -2.3586 -0.6476 46 1 0.2043 -1.3268 -1.7623 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001073804336.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:34:18 Heat of formation + Delta-G solvation = 37.766595 kcal Electronic energy + Delta-G solvation = -30489.885505 eV Core-core repulsion = 26381.873454 eV Total energy + Delta-G solvation = -4108.012051 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.164 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -43.04538 -40.87687 -40.09872 -38.16732 -36.91762 -36.08087 -34.50423 -34.01635 -32.93780 -31.48939 -30.81538 -29.67478 -27.31886 -27.08754 -25.67429 -24.59113 -23.83367 -22.44327 -22.21535 -21.67187 -21.31482 -19.61785 -18.83912 -18.18594 -17.83228 -17.32665 -17.03926 -16.94587 -16.79262 -16.55373 -16.25654 -15.89752 -15.71202 -15.39003 -15.02106 -14.58065 -14.54979 -14.29970 -14.09332 -13.97849 -13.88193 -13.72569 -13.37105 -13.15379 -13.05876 -13.02839 -12.73865 -12.49623 -12.34884 -12.04368 -11.86536 -11.73536 -11.57254 -11.50873 -11.42746 -11.29504 -10.58991 -10.31330 -10.29074 -9.98488 -8.82067 -8.70002 -7.88086 -5.33328 -0.48115 -0.10016 0.84977 1.22916 1.41898 1.46793 1.52179 2.13117 2.23690 2.38404 2.50179 2.85856 3.17551 3.25140 3.53608 3.59464 3.79719 3.93550 3.95693 3.97998 4.08780 4.17488 4.21758 4.36011 4.40230 4.47310 4.51462 4.55203 4.71397 4.75985 4.77625 4.79256 4.85507 5.01316 5.09265 5.12649 5.17092 5.21359 5.23678 5.31994 5.48806 5.57368 5.62205 5.66270 5.68596 6.37459 6.40628 6.52082 6.61757 7.08841 7.14317 7.90041 8.29390 9.16906 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.016674 B = 0.002926 C = 0.002578 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1678.845775 B = 9568.498374 C =10859.480828 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.048 4.048 3 Si 0.961 3.039 4 H -0.294 1.294 5 H -0.271 1.271 6 H -0.285 1.285 7 C -0.264 4.264 8 H 0.063 0.937 9 N -0.602 5.602 10 C 0.148 3.852 11 C -0.168 4.168 12 C 0.070 3.930 13 O -0.380 6.380 14 C 0.082 3.918 15 H 0.067 0.933 16 C 0.133 3.867 17 N -0.710 5.710 18 C 0.578 3.422 19 O -0.585 6.585 20 C -0.078 4.078 21 C -0.086 4.086 22 C -0.172 4.172 23 C 0.006 3.994 24 C -0.018 4.018 25 C -0.180 4.180 26 C 0.145 3.855 27 N -0.328 5.328 28 N -0.245 5.245 29 C 0.177 3.823 30 H 0.249 0.751 31 H 0.044 0.956 32 H 0.043 0.957 33 H 0.043 0.957 34 H 0.101 0.899 35 H 0.094 0.906 36 H 0.059 0.941 37 H 0.075 0.925 38 H 0.051 0.949 39 H 0.414 0.586 40 H 0.166 0.834 41 H 0.193 0.807 42 H 0.197 0.803 43 H 0.198 0.802 44 H 0.236 0.764 45 H 0.014 0.986 46 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.424 -27.490 -15.453 31.539 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.244 4.244 3 Si 0.789 3.211 4 H -0.220 1.220 5 H -0.197 1.197 6 H -0.212 1.212 7 C -0.394 4.394 8 H 0.081 0.919 9 N -0.324 5.324 10 C 0.021 3.979 11 C -0.209 4.209 12 C -0.006 4.006 13 O -0.298 6.298 14 C 0.021 3.979 15 H 0.085 0.915 16 C 0.008 3.992 17 N -0.363 5.363 18 C 0.369 3.631 19 O -0.467 6.467 20 C -0.194 4.194 21 C -0.112 4.112 22 C -0.197 4.197 23 C -0.108 4.108 24 C -0.044 4.044 25 C -0.203 4.203 26 C -0.044 4.044 27 N -0.138 5.138 28 N -0.008 5.008 29 C 0.050 3.950 30 H 0.058 0.942 31 H 0.063 0.937 32 H 0.061 0.939 33 H 0.062 0.938 34 H 0.119 0.881 35 H 0.112 0.888 36 H 0.077 0.923 37 H 0.093 0.907 38 H 0.069 0.931 39 H 0.254 0.746 40 H 0.183 0.817 41 H 0.211 0.789 42 H 0.214 0.786 43 H 0.215 0.785 44 H 0.252 0.748 45 H 0.032 0.968 46 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 0.200 -25.714 -14.807 29.673 hybrid contribution 0.275 0.756 0.184 0.826 sum 0.474 -24.957 -14.622 28.929 Atomic orbital electron populations 1.70171 1.06458 1.25803 1.55494 1.25723 0.96033 1.01331 1.01282 0.85444 0.77720 0.79752 0.78178 1.21996 1.19688 1.21153 1.19408 0.92801 0.86529 1.40681 0.91930 1.43801 1.33545 1.02845 1.52214 1.20919 0.95128 0.86864 0.94990 1.22144 0.99692 1.01198 0.97822 1.21570 0.96636 0.88275 0.94130 1.87431 1.25567 1.58219 1.58619 1.22753 0.83255 0.98885 0.92974 0.91490 1.21290 0.99252 0.88961 0.89704 1.45994 1.50896 1.17943 1.21500 1.16204 0.79063 0.86748 0.81126 1.90825 1.48352 1.31209 1.76317 1.19274 1.11194 0.85986 1.02916 1.21565 0.98596 0.99445 0.91556 1.21464 1.03276 0.92741 1.02190 1.20197 1.04565 0.94883 0.91132 1.21530 0.91981 0.90610 1.00312 1.22040 1.00733 1.03859 0.93647 1.24963 0.92899 0.87190 0.99381 1.75500 1.09304 1.18721 1.10314 1.45815 1.29976 1.10708 1.14274 1.21396 0.88519 0.95741 0.89319 0.94186 0.93719 0.93868 0.93784 0.88105 0.88751 0.92269 0.90728 0.93085 0.74634 0.81651 0.78941 0.78570 0.78475 0.74762 0.96795 0.94043 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.24 11.08 21.65 0.24 -57.00 16 2 C -0.05 -2.81 4.85 84.86 0.41 -2.40 16 3 Si 0.96 47.34 29.59 68.60 2.03 49.37 16 4 H -0.29 -14.52 7.11 99.48 0.71 -13.82 16 5 H -0.27 -12.71 7.11 99.48 0.71 -12.01 16 6 H -0.28 -13.98 7.11 99.48 0.71 -13.27 16 7 C -0.26 -15.04 9.42 84.03 0.79 -14.25 16 8 H 0.06 3.50 7.88 -2.91 -0.02 3.48 16 9 N -0.60 -30.98 2.58 -695.71 -1.79 -32.77 16 10 C 0.15 6.01 5.68 87.40 0.50 6.51 16 11 C -0.17 -5.54 6.03 29.57 0.18 -5.36 16 12 C 0.07 2.13 6.04 70.32 0.43 2.56 16 13 O -0.38 -15.22 9.78 -144.91 -1.42 -16.64 16 14 C 0.08 3.31 2.35 31.16 0.07 3.38 16 15 H 0.07 2.42 7.20 -2.38 -0.02 2.40 16 16 C 0.13 5.44 5.24 86.38 0.45 5.89 16 17 N -0.71 -26.02 5.49 -472.03 -2.59 -28.61 16 18 C 0.58 22.15 7.60 85.10 0.65 22.80 16 19 O -0.58 -26.25 16.79 -4.66 -0.08 -26.33 16 20 C -0.08 -2.44 6.84 39.37 0.27 -2.17 16 21 C -0.09 -2.15 10.49 22.46 0.24 -1.92 16 22 C -0.17 -2.96 10.92 22.54 0.25 -2.71 16 23 C 0.01 0.10 6.80 39.20 0.27 0.37 16 24 C -0.02 -0.14 10.12 22.40 0.23 0.09 16 25 C -0.18 -0.82 10.04 22.24 0.22 -0.60 16 26 C 0.15 1.41 11.29 85.29 0.96 2.37 16 27 N -0.33 -6.90 9.68 -57.06 -0.55 -7.45 16 28 N -0.24 -6.11 4.01 -180.12 -0.72 -6.83 16 29 C 0.18 8.98 4.54 86.63 0.39 9.37 16 30 H 0.25 14.94 8.31 -92.70 -0.77 14.17 16 31 H 0.04 1.84 7.97 -2.39 -0.02 1.82 16 32 H 0.04 1.62 8.10 -2.39 -0.02 1.60 16 33 H 0.04 1.69 8.14 -2.39 -0.02 1.67 16 34 H 0.10 2.47 8.14 -2.38 -0.02 2.45 16 35 H 0.09 2.37 8.14 -2.39 -0.02 2.35 16 36 H 0.06 1.53 7.27 -2.39 -0.02 1.51 16 37 H 0.07 3.10 8.14 -2.39 -0.02 3.08 16 38 H 0.05 2.34 8.14 -2.39 -0.02 2.32 16 39 H 0.41 13.59 6.06 -92.70 -0.56 13.03 16 40 H 0.17 3.88 8.06 -2.92 -0.02 3.86 16 41 H 0.19 1.67 8.06 -2.91 -0.02 1.65 16 42 H 0.20 -0.18 8.06 -2.91 -0.02 -0.20 16 43 H 0.20 -0.88 8.06 -2.91 -0.02 -0.90 16 44 H 0.24 0.17 8.06 -2.91 -0.02 0.14 16 45 H 0.01 0.77 8.02 -2.39 -0.02 0.75 16 46 H 0.04 2.42 6.31 -2.39 -0.02 2.40 16 Total: -1.00 -85.70 376.67 1.86 -83.85 By element: Atomic # 1 Polarization: 18.05 SS G_CDS: 0.44 Total: 18.50 kcal Atomic # 6 Polarization: 17.62 SS G_CDS: 6.30 Total: 23.92 kcal Atomic # 7 Polarization: -127.25 SS G_CDS: -5.42 Total: -132.66 kcal Atomic # 8 Polarization: -41.47 SS G_CDS: -1.50 Total: -42.97 kcal Atomic # 14 Polarization: 47.34 SS G_CDS: 2.03 Total: 49.37 kcal Total: -85.70 1.86 -83.85 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001073804336.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.612 kcal (2) G-P(sol) polarization free energy of solvation -85.704 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.908 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.858 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.846 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.767 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds