Wall clock time and date at job start Wed Apr 1 2020 02:40:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86807 * 119.99697 * 2 1 4 4 H 1.48501 * 109.46982 * 275.52606 * 3 2 1 5 5 H 1.48494 * 109.46989 * 35.52387 * 3 2 1 6 6 H 1.48492 * 109.47010 * 155.52479 * 3 2 1 7 7 C 1.38806 * 120.00344 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00178 * 336.47997 * 7 2 1 9 9 N 1.36937 * 119.99989 * 156.47165 * 7 2 1 10 10 C 1.47511 * 118.75761 * 139.40943 * 9 7 2 11 11 C 1.53567 * 111.02998 * 138.37613 * 10 9 7 12 12 C 1.51540 * 109.57928 * 320.01962 * 11 10 9 13 13 O 1.42154 * 108.75859 * 91.40306 * 12 11 10 14 14 C 1.38013 * 119.43727 * 272.77432 * 13 12 11 15 15 H 1.09007 * 109.46788 * 303.43217 * 14 13 12 16 16 C 1.53000 * 109.47420 * 183.43069 * 14 13 12 17 17 N 1.46502 * 109.46920 * 64.99950 * 16 14 13 18 18 C 1.34773 * 120.00134 * 180.02562 * 17 16 14 19 19 O 1.21593 * 119.99627 * 0.02562 * 18 17 16 20 20 C 1.47576 * 120.00246 * 180.02562 * 18 17 16 21 21 C 1.41760 * 120.00987 * 359.97438 * 20 18 17 22 22 C 1.35623 * 119.53592 * 180.02562 * 21 20 18 23 23 C 1.41178 * 119.51035 * 0.02562 * 22 21 20 24 24 N 1.32418 * 132.11797 * 180.02562 * 23 22 21 25 25 C 1.33594 * 109.22494 * 179.97438 * 24 23 22 26 26 C 1.34999 * 108.65897 * 0.02562 * 25 24 23 27 27 N 1.37010 * 107.14588 * 359.97438 * 26 25 24 28 28 C 1.35913 * 132.42189 * 180.02562 * 27 26 25 29 29 C 1.45121 * 118.76088 * 319.41161 * 9 7 2 30 30 H 0.96996 * 120.00132 * 0.02562 * 1 2 3 31 31 H 1.09001 * 109.16377 * 17.97224 * 10 9 7 32 32 H 1.09003 * 109.12745 * 258.74986 * 10 9 7 33 33 H 1.09000 * 109.45473 * 199.98674 * 11 10 9 34 34 H 1.08998 * 109.45659 * 80.05140 * 11 10 9 35 35 H 1.08997 * 109.59237 * 331.61901 * 12 11 10 36 36 H 1.09002 * 109.58587 * 211.18262 * 12 11 10 37 37 H 1.08998 * 109.47027 * 305.00512 * 16 14 13 38 38 H 1.08994 * 109.47001 * 184.99794 * 16 14 13 39 39 H 0.96999 * 119.99877 * 0.02562 * 17 16 14 40 40 H 1.07996 * 120.23207 * 0.05280 * 21 20 18 41 41 H 1.08005 * 120.24397 * 180.02562 * 22 21 20 42 42 H 1.07997 * 125.67020 * 180.26514 * 25 24 23 43 43 H 1.07999 * 126.42533 * 179.97438 * 26 25 24 44 44 H 1.08002 * 119.75734 * 359.97438 * 28 27 26 45 45 H 1.08999 * 109.46433 * 149.26615 * 29 9 7 46 46 H 1.09003 * 109.45926 * 29.30559 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.3809 2.1139 -1.3936 5 1 1.5108 2.6162 0.8135 6 1 3.6011 1.4094 0.5800 7 6 2.0103 -1.2021 0.0005 8 1 1.5377 -2.0984 0.3742 9 7 3.2943 -1.2515 -0.4729 10 6 4.2860 -2.0703 0.2496 11 6 5.1796 -2.8451 -0.7299 12 6 4.3410 -3.3645 -1.8803 13 8 4.3496 -2.3998 -2.9243 14 6 3.4155 -1.3838 -2.9168 15 1 2.4133 -1.8119 -2.8924 16 6 3.5763 -0.5337 -4.1787 17 7 3.2583 -1.3440 -5.3571 18 6 3.3321 -0.8008 -6.5884 19 8 3.6633 0.3616 -6.7211 20 6 3.0112 -1.6168 -7.7754 21 6 2.6256 -2.9722 -7.6208 22 6 2.3333 -3.7134 -8.7183 23 6 2.4180 -3.1240 -9.9984 24 7 2.1942 -3.6020 -11.2128 25 6 2.4140 -2.6389 -12.1121 26 6 2.7879 -1.5170 -11.4608 27 7 2.7943 -1.8101 -10.1225 28 6 3.0876 -1.0674 -9.0226 29 6 3.6280 -0.4963 -1.6663 30 1 -0.4850 0.8400 -0.0004 31 1 3.7645 -2.7776 0.8945 32 1 4.9084 -1.4187 0.8630 33 1 5.6442 -3.6840 -0.2117 34 1 5.9547 -2.1830 -1.1158 35 1 3.3178 -3.5278 -1.5421 36 1 4.7615 -4.3016 -2.2451 37 1 4.6044 -0.1785 -4.2489 38 1 2.8995 0.3193 -4.1309 39 1 2.9945 -2.2714 -5.2512 40 1 2.5647 -3.4113 -6.6361 41 1 2.0379 -4.7471 -8.6138 42 1 2.3063 -2.7397 -13.1819 43 1 3.0355 -0.5668 -11.9105 44 1 3.3825 -0.0346 -9.1363 45 1 4.6705 -0.1816 -1.6174 46 1 2.9863 0.3824 -1.7313 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001073851000.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:40:06 Heat of formation + Delta-G solvation = 24.782802 kcal Electronic energy + Delta-G solvation = -29853.177778 eV Core-core repulsion = 25744.602707 eV Total energy + Delta-G solvation = -4108.575071 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.164 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -43.89136 -41.20429 -40.38016 -38.03588 -37.04548 -36.15891 -34.82939 -34.19543 -33.35840 -31.78445 -30.27731 -29.81326 -27.68416 -27.09558 -25.34850 -24.23433 -24.09791 -22.82961 -22.56588 -21.82556 -21.24063 -19.38579 -18.94230 -18.55137 -17.86324 -17.60557 -17.51259 -17.06691 -17.01328 -16.40640 -16.22994 -16.09088 -15.65728 -15.53425 -15.35550 -15.05394 -14.81976 -14.57093 -14.33821 -14.16197 -14.12495 -13.83071 -13.77590 -13.18127 -12.91618 -12.82397 -12.79123 -12.40878 -12.27164 -12.15375 -12.04839 -11.79952 -11.57770 -11.33359 -11.28461 -11.25223 -10.69552 -10.34524 -10.28956 -9.93071 -8.97087 -8.74075 -8.25115 -5.64779 -0.56924 -0.00900 1.27430 1.32727 1.39002 1.45271 1.48660 2.01562 2.08015 2.37456 2.52438 2.72602 2.99508 3.15814 3.30245 3.45381 3.49501 3.65228 3.86631 3.97488 4.06817 4.16569 4.24863 4.32060 4.38798 4.44710 4.46753 4.47917 4.54395 4.70433 4.72628 4.76869 4.80369 4.88836 4.97365 5.00183 5.06111 5.20147 5.23732 5.26888 5.33573 5.37521 5.58081 5.87029 5.92504 6.14757 6.39269 6.71663 6.75093 6.98963 7.03216 7.60142 7.99177 8.93814 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.016705 B = 0.002520 C = 0.002375 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1675.787314 B =11108.806853 C =11786.842430 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.939 5.939 2 C -0.008 4.008 3 Si 0.928 3.072 4 H -0.272 1.272 5 H -0.307 1.307 6 H -0.264 1.264 7 C -0.264 4.264 8 H 0.045 0.955 9 N -0.613 5.613 10 C 0.137 3.863 11 C -0.156 4.156 12 C 0.083 3.917 13 O -0.388 6.388 14 C 0.090 3.910 15 H 0.044 0.956 16 C 0.138 3.862 17 N -0.699 5.699 18 C 0.571 3.429 19 O -0.576 6.576 20 C -0.163 4.163 21 C -0.074 4.074 22 C -0.085 4.085 23 C 0.207 3.793 24 N -0.524 5.524 25 C 0.021 3.979 26 C -0.092 4.092 27 N -0.374 5.374 28 C 0.134 3.866 29 C 0.112 3.888 30 H 0.263 0.737 31 H 0.054 0.946 32 H 0.021 0.979 33 H 0.101 0.899 34 H 0.068 0.932 35 H 0.039 0.961 36 H 0.113 0.887 37 H 0.079 0.921 38 H 0.071 0.929 39 H 0.415 0.585 40 H 0.170 0.830 41 H 0.177 0.823 42 H 0.212 0.788 43 H 0.219 0.781 44 H 0.188 0.812 45 H 0.061 0.939 46 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.732 -6.710 -18.855 22.254 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.206 4.206 3 Si 0.757 3.243 4 H -0.199 1.199 5 H -0.236 1.236 6 H -0.188 1.188 7 C -0.394 4.394 8 H 0.062 0.938 9 N -0.337 5.337 10 C 0.013 3.987 11 C -0.195 4.195 12 C 0.007 3.993 13 O -0.307 6.307 14 C 0.028 3.972 15 H 0.061 0.939 16 C 0.014 3.986 17 N -0.350 5.350 18 C 0.358 3.642 19 O -0.458 6.458 20 C -0.170 4.170 21 C -0.098 4.098 22 C -0.105 4.105 23 C -0.037 4.037 24 N -0.245 5.245 25 C -0.128 4.128 26 C -0.220 4.220 27 N -0.047 5.047 28 C 0.008 3.992 29 C -0.015 4.015 30 H 0.073 0.927 31 H 0.072 0.928 32 H 0.039 0.961 33 H 0.119 0.881 34 H 0.087 0.913 35 H 0.057 0.943 36 H 0.131 0.869 37 H 0.098 0.902 38 H 0.089 0.911 39 H 0.253 0.747 40 H 0.187 0.813 41 H 0.194 0.806 42 H 0.228 0.772 43 H 0.236 0.764 44 H 0.205 0.795 45 H 0.079 0.921 46 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 9.745 -6.591 -19.275 22.582 hybrid contribution -0.323 1.617 0.935 1.896 sum 9.423 -4.974 -18.340 21.210 Atomic orbital electron populations 1.69986 1.07536 1.27480 1.53158 1.26045 0.95468 1.00687 0.98364 0.86088 0.79506 0.81092 0.77661 1.19855 1.23587 1.18825 1.18668 0.88699 0.93098 1.38963 0.93778 1.44134 1.07454 1.56108 1.25978 1.21433 0.90423 0.93182 0.93677 1.22468 0.98587 1.01046 0.97361 1.22208 0.99407 0.90573 0.87130 1.86110 1.55927 1.39041 1.49657 1.22116 0.91984 0.89297 0.93796 0.93855 1.21276 1.01906 0.93131 0.82301 1.45650 1.68304 1.16274 1.04783 1.17906 0.76963 0.86083 0.83252 1.90788 1.49914 1.18282 1.86787 1.19232 1.09453 0.96164 0.92101 1.21287 0.96524 0.91208 1.00740 1.20445 1.01497 1.02299 0.86240 1.21594 1.03631 0.82287 0.96191 1.70737 1.24211 1.31781 0.97730 1.23168 1.00319 0.88219 1.01106 1.23469 1.14602 1.04614 0.79361 1.43007 1.42866 1.11588 1.07192 1.21829 0.95204 0.98143 0.83990 1.21900 0.98837 0.94148 0.86651 0.92740 0.92795 0.96054 0.88084 0.91337 0.94266 0.86900 0.90237 0.91107 0.74681 0.81265 0.80595 0.77168 0.76406 0.79473 0.92057 0.94175 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.29 13.97 21.65 0.30 -55.99 16 2 C -0.01 -0.44 5.21 84.86 0.44 0.01 16 3 Si 0.93 44.68 25.27 68.60 1.73 46.41 16 4 H -0.27 -12.47 6.70 99.48 0.67 -11.80 16 5 H -0.31 -15.14 7.11 99.48 0.71 -14.43 16 6 H -0.26 -12.33 7.11 99.48 0.71 -11.63 16 7 C -0.26 -14.07 9.69 84.03 0.81 -13.26 16 8 H 0.04 2.60 8.06 -2.91 -0.02 2.58 16 9 N -0.61 -26.69 1.75 -698.15 -1.22 -27.91 16 10 C 0.14 4.86 6.30 86.38 0.54 5.40 16 11 C -0.16 -4.12 5.79 30.31 0.18 -3.95 16 12 C 0.08 2.21 6.37 71.50 0.46 2.67 16 13 O -0.39 -11.37 9.38 -117.83 -1.11 -12.48 16 14 C 0.09 3.00 2.68 31.21 0.08 3.08 16 15 H 0.04 1.65 8.14 -2.38 -0.02 1.63 16 16 C 0.14 4.15 5.34 86.38 0.46 4.61 16 17 N -0.70 -17.39 5.44 -466.23 -2.54 -19.93 16 18 C 0.57 14.82 7.76 86.71 0.67 15.49 16 19 O -0.58 -18.77 16.27 -4.01 -0.07 -18.83 16 20 C -0.16 -3.36 5.84 -20.35 -0.12 -3.48 16 21 C -0.07 -1.22 9.53 22.53 0.21 -1.00 16 22 C -0.08 -1.49 10.09 22.39 0.23 -1.26 16 23 C 0.21 4.55 7.81 134.16 1.05 5.60 16 24 N -0.52 -12.26 11.31 -194.15 -2.20 -14.46 16 25 C 0.02 0.35 11.82 83.68 0.99 1.34 16 26 C -0.09 -1.39 11.75 83.14 0.98 -0.41 16 27 N -0.37 -7.34 2.93 -351.03 -1.03 -8.37 16 28 C 0.13 2.61 10.49 83.66 0.88 3.49 16 29 C 0.11 4.43 3.93 87.26 0.34 4.77 16 30 H 0.26 15.09 8.31 -92.71 -0.77 14.32 16 31 H 0.05 1.95 7.91 -2.39 -0.02 1.93 16 32 H 0.02 0.76 8.14 -2.39 -0.02 0.74 16 33 H 0.10 2.04 8.14 -2.39 -0.02 2.02 16 34 H 0.07 1.82 8.01 -2.39 -0.02 1.80 16 35 H 0.04 1.26 7.40 -2.39 -0.02 1.25 16 36 H 0.11 2.23 8.14 -2.39 -0.02 2.21 16 37 H 0.08 2.35 8.14 -2.39 -0.02 2.33 16 38 H 0.07 2.34 8.14 -2.39 -0.02 2.32 16 39 H 0.42 8.38 6.49 -92.71 -0.60 7.77 16 40 H 0.17 1.93 6.44 -2.91 -0.02 1.91 16 41 H 0.18 2.26 8.06 -2.91 -0.02 2.24 16 42 H 0.21 1.98 8.06 -2.91 -0.02 1.96 16 43 H 0.22 1.55 8.06 -2.91 -0.02 1.53 16 44 H 0.19 3.20 7.56 -2.91 -0.02 3.18 16 45 H 0.06 2.24 8.11 -2.39 -0.02 2.22 16 46 H 0.04 1.78 3.65 -2.39 -0.01 1.77 16 Total: -1.00 -73.08 372.60 2.46 -70.62 By element: Atomic # 1 Polarization: 17.46 SS G_CDS: 0.37 Total: 17.84 kcal Atomic # 6 Polarization: 14.88 SS G_CDS: 8.21 Total: 23.09 kcal Atomic # 7 Polarization: -119.97 SS G_CDS: -6.68 Total: -126.65 kcal Atomic # 8 Polarization: -30.14 SS G_CDS: -1.17 Total: -31.31 kcal Atomic # 14 Polarization: 44.68 SS G_CDS: 1.73 Total: 46.41 kcal Total: -73.08 2.46 -70.62 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001073851000.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.406 kcal (2) G-P(sol) polarization free energy of solvation -73.085 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.322 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.461 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.623 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.783 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds