Wall clock time and date at job start Wed Apr 1 2020 02:34:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86794 * 120.00303 * 2 1 4 4 H 1.48501 * 109.47416 * 239.99805 * 3 2 1 5 5 H 1.48496 * 109.47125 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.46964 * 119.99751 * 3 2 1 7 7 C 1.38815 * 119.99456 * 179.97438 * 2 1 3 8 8 H 1.08009 * 119.99749 * 195.51022 * 7 2 1 9 9 N 1.36930 * 120.00487 * 15.51318 * 7 2 1 10 10 C 1.44457 * 118.51615 * 206.14357 * 9 7 2 11 11 C 1.54872 * 109.32823 * 268.93462 * 10 9 7 12 12 C 1.47687 * 109.67858 * 290.10023 * 11 10 9 13 13 O 1.42628 * 113.66969 * 60.78639 * 12 11 10 14 14 C 1.40526 * 113.54030 * 272.25912 * 13 12 11 15 15 H 1.09008 * 109.33276 * 335.19929 * 14 13 12 16 16 C 1.52998 * 109.40752 * 215.39851 * 14 13 12 17 17 N 1.46501 * 109.47213 * 64.59454 * 16 14 13 18 18 C 1.34771 * 119.99978 * 179.97438 * 17 16 14 19 19 O 1.21670 * 120.00182 * 359.97438 * 18 17 16 20 20 C 1.46933 * 120.00006 * 179.97438 * 18 17 16 21 21 C 1.36479 * 126.72695 * 359.97345 * 20 18 17 22 22 N 1.35351 * 109.77539 * 180.02562 * 21 20 18 23 23 H 0.97000 * 124.82701 * 179.97438 * 22 21 20 24 24 C 1.37863 * 110.34932 * 0.24256 * 22 21 20 25 25 C 1.39231 * 133.46905 * 180.42318 * 24 22 21 26 26 C 1.38342 * 118.29730 * 179.60422 * 25 24 22 27 27 C 1.38599 * 119.63934 * 359.73541 * 26 25 24 28 28 N 1.31632 * 121.19597 * 0.02562 * 27 26 25 29 29 C 1.32693 * 121.42688 * 359.97438 * 28 27 26 30 30 C 1.48178 * 118.51498 * 26.11671 * 9 7 2 31 31 H 0.97002 * 119.99657 * 0.02562 * 1 2 3 32 32 H 1.09005 * 109.49763 * 28.89284 * 10 9 7 33 33 H 1.09004 * 109.49901 * 148.94604 * 10 9 7 34 34 H 1.08995 * 109.43861 * 50.16289 * 11 10 9 35 35 H 1.09003 * 109.43364 * 170.04151 * 11 10 9 36 36 H 1.09000 * 108.64711 * 181.88798 * 12 11 10 37 37 H 1.09010 * 108.64681 * 299.85483 * 12 11 10 38 38 H 1.09001 * 109.47267 * 304.59140 * 16 14 13 39 39 H 1.09002 * 109.46448 * 184.59165 * 16 14 13 40 40 H 0.96997 * 119.99874 * 359.97438 * 17 16 14 41 41 H 1.08007 * 125.10795 * 0.04406 * 21 20 18 42 42 H 1.07993 * 120.85339 * 359.33599 * 25 24 22 43 43 H 1.07990 * 120.18083 * 179.76349 * 26 25 24 44 44 H 1.07996 * 119.40257 * 180.02562 * 27 26 25 45 45 H 1.09009 * 109.23179 * 18.46858 * 30 9 7 46 46 H 1.08994 * 109.23844 * 259.09380 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6176 0.0000 4 1 3.1040 1.6963 -1.2125 5 1 1.2853 2.7464 0.0006 6 1 3.1039 1.6962 1.2126 7 6 2.0101 -1.2022 0.0005 8 1 3.0607 -1.2192 0.2507 9 7 1.3629 -2.3666 -0.3161 10 6 1.8761 -3.6077 0.2160 11 6 2.8897 -4.2146 -0.7854 12 6 2.1763 -4.6917 -1.9874 13 8 1.4797 -3.6618 -2.6863 14 6 0.1730 -3.4486 -2.2151 15 1 -0.1922 -4.3590 -1.7397 16 6 -0.7384 -3.0875 -3.3897 17 7 -0.8283 -4.2269 -4.3063 18 6 -1.5822 -4.1380 -5.4198 19 8 -2.1885 -3.1117 -5.6638 20 6 -1.6719 -5.2805 -6.3394 21 6 -1.0533 -6.4893 -6.2020 22 7 -1.3731 -7.2886 -7.2464 23 1 -1.0525 -8.1960 -7.3680 24 6 -2.2143 -6.6278 -8.1160 25 6 -2.8307 -6.9873 -9.3116 26 6 -3.6407 -6.0568 -9.9375 27 6 -3.8206 -4.8082 -9.3635 28 7 -3.2332 -4.4879 -8.2298 29 6 -2.4472 -5.3455 -7.5914 30 6 0.1673 -2.2966 -1.1886 31 1 -0.4850 0.8401 -0.0004 32 1 2.3738 -3.4175 1.1670 33 1 1.0532 -4.3058 0.3695 34 1 3.6156 -3.4540 -1.0726 35 1 3.4077 -5.0506 -0.3154 36 1 2.8997 -5.1451 -2.6650 37 1 1.4571 -5.4535 -1.6863 38 1 -0.3267 -2.2277 -3.9182 39 1 -1.7326 -2.8425 -3.0160 40 1 -0.3452 -5.0451 -4.1116 41 1 -0.4062 -6.7664 -5.3829 42 1 -2.6768 -7.9659 -9.7415 43 1 -4.1306 -6.3021 -10.8681 44 1 -4.4541 -4.0848 -9.8552 45 1 0.1646 -1.3439 -1.7183 46 1 -0.7303 -2.3676 -0.5743 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001073854227.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:34:36 Heat of formation + Delta-G solvation = -6.070882 kcal Electronic energy + Delta-G solvation = -29752.857870 eV Core-core repulsion = 25642.944883 eV Total energy + Delta-G solvation = -4109.912987 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.164 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.66154 -40.71431 -39.84522 -38.84101 -36.85149 -35.89700 -34.14646 -33.75316 -32.90858 -31.37497 -30.71995 -29.92477 -27.21016 -27.01712 -24.82074 -24.66260 -23.45272 -23.35812 -22.32741 -21.52238 -20.57442 -19.33935 -18.80544 -17.97330 -17.72486 -17.57427 -17.07907 -16.93660 -16.58525 -16.32697 -16.15017 -15.76691 -15.62613 -15.51212 -15.21143 -14.56223 -14.44764 -14.19596 -14.02634 -13.86765 -13.82020 -13.64753 -13.57208 -13.27954 -13.22850 -12.99923 -12.71639 -12.45863 -12.27669 -11.99010 -11.77658 -11.42779 -11.31703 -11.27251 -11.06189 -10.54365 -10.25024 -10.16516 -10.10883 -9.50554 -9.17087 -8.65755 -7.84847 -5.29579 -0.06648 0.30865 0.99848 1.43182 1.47844 1.53097 1.92821 2.19757 2.39456 2.52297 2.96116 3.02178 3.28874 3.31638 3.60919 3.68685 3.82061 4.01301 4.07306 4.14069 4.16552 4.24395 4.30403 4.34361 4.47147 4.53114 4.62525 4.65365 4.66667 4.73810 4.84187 4.92400 4.95215 5.14665 5.18742 5.23801 5.25622 5.30338 5.33879 5.46335 5.55656 5.63458 5.73289 5.87880 6.40769 6.45555 6.62600 6.70129 7.18250 7.21354 7.40153 7.95297 8.32666 9.19586 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.018037 B = 0.002421 C = 0.002201 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1552.003602 B =11564.413036 C =12719.211615 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.051 4.051 3 Si 0.959 3.041 4 H -0.285 1.285 5 H -0.296 1.296 6 H -0.272 1.272 7 C -0.259 4.259 8 H 0.062 0.938 9 N -0.603 5.603 10 C 0.147 3.853 11 C -0.171 4.171 12 C 0.066 3.934 13 O -0.378 6.378 14 C 0.082 3.918 15 H 0.080 0.920 16 C 0.139 3.861 17 N -0.703 5.703 18 C 0.578 3.422 19 O -0.589 6.589 20 C -0.271 4.271 21 C 0.172 3.828 22 N -0.546 5.546 23 H 0.447 0.553 24 C 0.026 3.974 25 C -0.067 4.067 26 C -0.155 4.155 27 C 0.080 3.920 28 N -0.501 5.501 29 C 0.093 3.907 30 C 0.171 3.829 31 H 0.248 0.752 32 H 0.040 0.960 33 H 0.047 0.953 34 H 0.040 0.960 35 H 0.098 0.902 36 H 0.100 0.900 37 H 0.068 0.932 38 H 0.042 0.958 39 H 0.067 0.933 40 H 0.413 0.587 41 H 0.236 0.764 42 H 0.178 0.822 43 H 0.180 0.820 44 H 0.171 0.829 45 H 0.039 0.961 46 H 0.011 0.989 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.750 -26.684 -17.367 31.886 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.246 4.246 3 Si 0.788 3.212 4 H -0.211 1.211 5 H -0.222 1.222 6 H -0.198 1.198 7 C -0.390 4.390 8 H 0.080 0.920 9 N -0.325 5.325 10 C 0.020 3.980 11 C -0.211 4.211 12 C -0.010 4.010 13 O -0.297 6.297 14 C 0.022 3.978 15 H 0.098 0.902 16 C 0.014 3.986 17 N -0.356 5.356 18 C 0.368 3.632 19 O -0.470 6.470 20 C -0.283 4.283 21 C 0.035 3.965 22 N -0.150 5.150 23 H 0.290 0.710 24 C -0.082 4.082 25 C -0.095 4.095 26 C -0.176 4.176 27 C -0.085 4.085 28 N -0.209 5.209 29 C -0.040 4.040 30 C 0.045 3.955 31 H 0.057 0.943 32 H 0.058 0.942 33 H 0.066 0.934 34 H 0.059 0.941 35 H 0.116 0.884 36 H 0.118 0.882 37 H 0.086 0.914 38 H 0.060 0.940 39 H 0.086 0.914 40 H 0.250 0.750 41 H 0.253 0.747 42 H 0.196 0.804 43 H 0.197 0.803 44 H 0.188 0.812 45 H 0.057 0.943 46 H 0.029 0.971 Dipole moment (debyes) X Y Z Total from point charges -2.269 -25.049 -17.268 30.509 hybrid contribution 0.525 0.477 0.258 0.755 sum -1.744 -24.571 -17.010 29.936 Atomic orbital electron populations 1.70171 1.06386 1.25619 1.55881 1.25704 0.96052 1.01251 1.01599 0.85463 0.77685 0.79918 0.78153 1.21127 1.22200 1.19765 1.19404 0.92394 0.86396 1.40778 0.92003 1.43808 1.31627 1.02818 1.54223 1.20933 0.95253 0.86957 0.94840 1.22153 0.99679 1.01009 0.98250 1.21635 0.96535 0.88487 0.94298 1.87470 1.26110 1.58799 1.57311 1.22691 0.83403 0.99007 0.92712 0.90224 1.21142 0.98594 0.89065 0.89762 1.45450 1.49826 1.17585 1.22698 1.17684 0.78180 0.86779 0.80536 1.90804 1.47642 1.33098 1.75479 1.19906 1.12188 0.96985 0.99215 1.22785 0.94932 0.87251 0.91574 1.41323 1.39668 1.16179 1.17820 0.70975 1.19227 0.99341 0.93485 0.96139 1.21044 0.95355 1.01992 0.91124 1.22299 0.99627 0.93280 1.02397 1.23234 0.97303 0.97233 0.90711 1.67049 1.08082 1.36181 1.09620 1.19934 0.97801 0.90786 0.95503 1.21376 0.87984 0.96193 0.89941 0.94333 0.94177 0.93441 0.94139 0.88363 0.88248 0.91375 0.93953 0.91439 0.74964 0.74743 0.80426 0.80311 0.81225 0.94250 0.97061 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.12 10.98 21.65 0.24 -56.88 16 2 C -0.05 -2.95 4.88 84.86 0.41 -2.54 16 3 Si 0.96 47.26 29.58 68.60 2.03 49.29 16 4 H -0.28 -13.93 7.11 99.48 0.71 -13.22 16 5 H -0.30 -14.71 7.11 99.48 0.71 -14.00 16 6 H -0.27 -12.75 7.11 99.48 0.71 -12.04 16 7 C -0.26 -14.56 9.43 84.04 0.79 -13.77 16 8 H 0.06 3.42 7.88 -2.91 -0.02 3.39 16 9 N -0.60 -30.05 2.59 -696.45 -1.80 -31.85 16 10 C 0.15 5.69 5.68 87.40 0.50 6.18 16 11 C -0.17 -5.21 6.03 29.57 0.18 -5.03 16 12 C 0.07 1.72 6.05 70.32 0.43 2.15 16 13 O -0.38 -13.33 9.77 -144.92 -1.42 -14.74 16 14 C 0.08 2.96 2.35 31.03 0.07 3.04 16 15 H 0.08 2.37 7.20 -2.38 -0.02 2.35 16 16 C 0.14 5.16 5.24 86.38 0.45 5.61 16 17 N -0.70 -20.36 5.48 -466.84 -2.56 -22.92 16 18 C 0.58 20.23 7.80 86.52 0.67 20.90 16 19 O -0.59 -27.77 16.96 -4.25 -0.07 -27.84 16 20 C -0.27 -7.20 6.27 -18.99 -0.12 -7.32 16 21 C 0.17 2.11 11.33 83.74 0.95 3.06 16 22 N -0.55 -4.78 5.98 -187.00 -1.12 -5.90 16 23 H 0.45 -0.38 8.96 -92.71 -0.83 -1.21 16 24 C 0.03 0.44 7.27 38.98 0.28 0.73 16 25 C -0.07 -0.76 10.19 22.53 0.23 -0.53 16 26 C -0.16 -2.00 10.09 22.38 0.23 -1.77 16 27 C 0.08 1.75 11.16 84.81 0.95 2.70 16 28 N -0.50 -16.28 10.41 -184.62 -1.92 -18.20 16 29 C 0.09 2.66 7.35 41.98 0.31 2.97 16 30 C 0.17 8.37 4.50 86.50 0.39 8.76 16 31 H 0.25 14.88 8.31 -92.71 -0.77 14.11 16 32 H 0.04 1.60 7.97 -2.38 -0.02 1.58 16 33 H 0.05 1.65 8.10 -2.39 -0.02 1.63 16 34 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 35 H 0.10 2.23 8.14 -2.39 -0.02 2.21 16 36 H 0.10 2.01 8.14 -2.39 -0.02 1.99 16 37 H 0.07 1.36 7.27 -2.38 -0.02 1.34 16 38 H 0.04 1.85 8.14 -2.39 -0.02 1.84 16 39 H 0.07 2.65 8.14 -2.39 -0.02 2.63 16 40 H 0.41 8.01 7.33 -92.71 -0.68 7.33 16 41 H 0.24 0.35 7.38 -2.91 -0.02 0.33 16 42 H 0.18 0.38 8.06 -2.91 -0.02 0.35 16 43 H 0.18 0.79 8.06 -2.92 -0.02 0.77 16 44 H 0.17 2.86 8.06 -2.91 -0.02 2.84 16 45 H 0.04 2.26 6.24 -2.38 -0.01 2.24 16 46 H 0.01 0.60 8.02 -2.39 -0.02 0.58 16 Total: -1.00 -95.02 378.22 -0.38 -95.40 By element: Atomic # 1 Polarization: 8.98 SS G_CDS: -0.48 Total: 8.50 kcal Atomic # 6 Polarization: 18.43 SS G_CDS: 6.72 Total: 25.15 kcal Atomic # 7 Polarization: -128.59 SS G_CDS: -7.16 Total: -135.76 kcal Atomic # 8 Polarization: -41.10 SS G_CDS: -1.49 Total: -42.59 kcal Atomic # 14 Polarization: 47.26 SS G_CDS: 2.03 Total: 49.29 kcal Total: -95.02 -0.38 -95.40 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001073854227.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.331 kcal (2) G-P(sol) polarization free energy of solvation -95.022 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.692 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.379 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -95.402 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.071 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds