Wall clock time and date at job start Wed Apr 1 2020 02:34:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86801 * 119.99886 * 2 1 4 4 H 1.48498 * 109.47094 * 275.55234 * 3 2 1 5 5 H 1.48497 * 109.47077 * 35.55521 * 3 2 1 6 6 H 1.48500 * 109.47134 * 155.55410 * 3 2 1 7 7 C 1.38817 * 119.99943 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99830 * 336.54825 * 7 2 1 9 9 N 1.36944 * 119.99855 * 156.55383 * 7 2 1 10 10 C 1.43424 * 120.63206 * 320.49282 * 9 7 2 11 11 C 1.55318 * 116.23994 * 269.37709 * 10 9 7 12 12 C 1.55193 * 108.87539 * 319.46548 * 11 10 9 13 13 O 1.39636 * 110.56746 * 322.14579 * 12 11 10 14 14 C 1.42384 * 108.63745 * 101.16921 * 13 12 11 15 15 H 1.09005 * 108.61620 * 28.42500 * 14 13 12 16 16 C 1.52995 * 108.61979 * 146.33638 * 14 13 12 17 17 N 1.46493 * 109.47598 * 299.99905 * 16 14 13 18 18 C 1.34781 * 120.00490 * 180.02562 * 17 16 14 19 19 O 1.21661 * 119.99442 * 0.02562 * 18 17 16 20 20 C 1.46924 * 120.00446 * 180.02562 * 18 17 16 21 21 C 1.36484 * 126.72278 * 359.97438 * 20 18 17 22 22 N 1.35362 * 109.77413 * 180.02562 * 21 20 18 23 23 H 0.96991 * 124.82868 * 179.97438 * 22 21 20 24 24 C 1.37867 * 110.34663 * 0.02562 * 22 21 20 25 25 C 1.39226 * 133.47271 * 180.02562 * 24 22 21 26 26 C 1.38336 * 118.30140 * 179.97438 * 25 24 22 27 27 C 1.38601 * 119.63842 * 359.97438 * 26 25 24 28 28 N 1.31635 * 121.19291 * 359.75618 * 27 26 25 29 29 C 1.32686 * 121.42797 * 0.49282 * 28 27 26 30 30 C 1.46916 * 113.78619 * 267.45541 * 14 13 12 31 31 H 0.96996 * 120.00204 * 359.97438 * 1 2 3 32 32 H 1.09005 * 108.12370 * 147.61692 * 10 9 7 33 33 H 1.08999 * 107.96607 * 31.01318 * 10 9 7 34 34 H 1.09005 * 109.57055 * 199.65234 * 11 10 9 35 35 H 1.08999 * 109.57157 * 79.28716 * 11 10 9 36 36 H 1.08996 * 109.25693 * 201.85704 * 12 11 10 37 37 H 1.08999 * 109.25194 * 82.42680 * 12 11 10 38 38 H 1.09006 * 109.46820 * 180.02562 * 16 14 13 39 39 H 1.08996 * 109.47019 * 60.00772 * 16 14 13 40 40 H 0.97007 * 119.99788 * 0.02562 * 17 16 14 41 41 H 1.07996 * 125.11553 * 0.02937 * 21 20 18 42 42 H 1.08008 * 120.85039 * 359.97169 * 25 24 22 43 43 H 1.07998 * 120.18147 * 179.97438 * 26 25 24 44 44 H 1.07999 * 119.39975 * 179.97438 * 27 26 25 45 45 H 1.09005 * 109.98495 * 176.12059 * 30 14 13 46 46 H 1.09000 * 109.99208 * 297.47911 * 30 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.3803 2.1142 -1.3935 5 1 1.5112 2.6159 0.8141 6 1 3.6015 1.4092 0.5794 7 6 2.0103 -1.2022 -0.0005 8 1 1.5371 -2.0990 0.3713 9 7 3.2949 -1.2509 -0.4724 10 6 3.6758 -0.5002 -1.6336 11 6 3.5337 -1.2275 -2.9986 12 6 3.9997 -2.6986 -2.8346 13 8 5.1012 -2.7719 -1.9795 14 6 4.6537 -3.1973 -0.6965 15 1 3.7622 -3.8113 -0.8249 16 6 5.7478 -4.0545 -0.0571 17 7 6.0129 -5.2199 -0.9042 18 6 6.9451 -6.1216 -0.5376 19 8 7.5661 -5.9680 0.4972 20 6 7.2113 -7.2901 -1.3876 21 6 6.5996 -7.5967 -2.5685 22 7 7.1078 -8.7503 -3.0616 23 1 6.8289 -9.1686 -3.8910 24 6 8.0776 -9.2467 -2.2167 25 6 8.8927 -10.3748 -2.2520 26 6 9.7816 -10.5746 -1.2110 27 6 9.8381 -9.6583 -0.1726 28 7 9.0630 -8.5945 -0.1591 29 6 8.1911 -8.3614 -1.1318 30 6 4.3311 -2.0914 0.2153 31 1 -0.4850 0.8400 0.0004 32 1 4.7170 -0.1993 -1.5164 33 1 3.0660 0.4027 -1.6653 34 1 4.1535 -0.7291 -3.7441 35 1 2.4911 -1.2079 -3.3159 36 1 4.2746 -3.0995 -3.8102 37 1 3.1832 -3.2903 -2.4207 38 1 5.4190 -4.3885 0.9271 39 1 6.6586 -3.4645 0.0447 40 1 5.5174 -5.3426 -1.7292 41 1 5.8264 -7.0074 -3.0389 42 1 8.8326 -11.0761 -3.0712 43 1 10.4280 -11.4398 -1.2074 44 1 10.5332 -9.8183 0.6384 45 1 3.9318 -2.4841 1.1505 46 1 5.2236 -1.4970 0.4106 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001073854228.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:34:39 Heat of formation + Delta-G solvation = 1.148886 kcal Electronic energy + Delta-G solvation = -29677.909321 eV Core-core repulsion = 25568.309406 eV Total energy + Delta-G solvation = -4109.599914 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.164 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.65531 -41.03906 -39.94591 -38.83359 -37.02768 -35.90668 -33.94381 -33.79189 -33.44980 -31.37261 -30.73746 -30.09172 -27.41450 -27.11437 -24.80013 -24.62797 -23.44801 -23.30456 -22.51664 -21.81922 -20.62786 -19.33970 -18.82669 -18.03715 -17.73540 -17.42916 -17.32815 -17.03208 -16.85054 -16.33694 -16.04977 -15.78732 -15.71970 -15.53484 -15.46838 -14.92615 -14.43738 -14.28671 -14.07519 -14.03054 -13.88676 -13.72900 -13.64687 -13.56986 -13.24582 -13.12402 -12.75719 -12.62572 -12.32256 -11.99734 -11.73277 -11.59973 -11.29471 -11.26774 -11.06630 -10.59609 -10.40641 -10.18251 -10.06359 -9.50151 -9.16312 -8.74161 -8.23340 -5.63052 -0.06590 0.31505 1.00433 1.29168 1.39776 1.50939 1.93621 2.24348 2.40341 2.40816 2.95600 3.02317 3.04745 3.22599 3.31405 3.69237 3.83404 3.99447 4.02409 4.05253 4.14188 4.24611 4.30917 4.33717 4.40222 4.51962 4.59473 4.61186 4.65587 4.70799 4.73638 4.75906 4.90410 5.00853 5.11219 5.14252 5.15505 5.20758 5.24549 5.29918 5.34740 5.48487 5.88270 5.93664 6.14607 6.34436 6.44395 6.70112 6.97023 7.20839 7.40494 7.59062 8.07306 8.95621 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.027284 B = 0.002182 C = 0.002108 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1025.999599 B =12830.326202 C =13277.334826 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.939 5.939 2 C -0.010 4.010 3 Si 0.936 3.064 4 H -0.278 1.278 5 H -0.307 1.307 6 H -0.267 1.267 7 C -0.255 4.255 8 H 0.048 0.952 9 N -0.610 5.610 10 C 0.143 3.857 11 C -0.167 4.167 12 C 0.068 3.932 13 O -0.354 6.354 14 C 0.078 3.922 15 H 0.072 0.928 16 C 0.130 3.870 17 N -0.707 5.707 18 C 0.582 3.418 19 O -0.586 6.586 20 C -0.271 4.271 21 C 0.168 3.832 22 N -0.549 5.549 23 H 0.446 0.554 24 C 0.024 3.976 25 C -0.069 4.069 26 C -0.156 4.156 27 C 0.081 3.919 28 N -0.497 5.497 29 C 0.094 3.906 30 C 0.109 3.891 31 H 0.263 0.737 32 H 0.040 0.960 33 H 0.017 0.983 34 H 0.079 0.921 35 H 0.052 0.948 36 H 0.103 0.897 37 H 0.051 0.949 38 H 0.075 0.925 39 H 0.061 0.939 40 H 0.412 0.588 41 H 0.233 0.767 42 H 0.176 0.824 43 H 0.179 0.821 44 H 0.172 0.828 45 H 0.080 0.920 46 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.494 -23.394 -13.579 31.681 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.208 4.208 3 Si 0.766 3.234 4 H -0.205 1.205 5 H -0.236 1.236 6 H -0.192 1.192 7 C -0.385 4.385 8 H 0.066 0.934 9 N -0.334 5.334 10 C 0.016 3.984 11 C -0.207 4.207 12 C -0.009 4.009 13 O -0.272 6.272 14 C 0.019 3.981 15 H 0.090 0.910 16 C 0.005 3.995 17 N -0.359 5.359 18 C 0.371 3.629 19 O -0.467 6.467 20 C -0.282 4.282 21 C 0.031 3.969 22 N -0.152 5.152 23 H 0.289 0.711 24 C -0.084 4.084 25 C -0.097 4.097 26 C -0.176 4.176 27 C -0.084 4.084 28 N -0.206 5.206 29 C -0.039 4.039 30 C -0.015 4.015 31 H 0.073 0.927 32 H 0.058 0.942 33 H 0.035 0.965 34 H 0.098 0.902 35 H 0.071 0.929 36 H 0.121 0.879 37 H 0.069 0.931 38 H 0.093 0.907 39 H 0.080 0.920 40 H 0.248 0.752 41 H 0.249 0.751 42 H 0.193 0.807 43 H 0.196 0.804 44 H 0.189 0.811 45 H 0.099 0.901 46 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 16.969 -22.557 -12.297 30.789 hybrid contribution -0.748 0.711 -0.654 1.222 sum 16.220 -21.846 -12.951 30.134 Atomic orbital electron populations 1.69977 1.07433 1.27448 1.53410 1.26049 0.95524 1.00764 0.98416 0.85952 0.79314 0.81030 0.77147 1.20505 1.23564 1.19192 1.18602 0.88011 0.93121 1.38762 0.93425 1.44201 1.06823 1.55902 1.26451 1.20727 0.97058 0.93278 0.87317 1.23454 1.00668 0.98527 0.98098 1.22491 0.88388 0.95229 0.94841 1.87630 1.31016 1.88517 1.20076 1.21663 0.95696 0.94926 0.85863 0.91004 1.21394 0.98229 0.85950 0.93940 1.45491 1.40209 1.23565 1.26654 1.17552 0.78859 0.81913 0.84556 1.90789 1.51250 1.77460 1.27154 1.19943 1.07366 0.99811 1.01090 1.22781 0.95845 0.86886 0.91413 1.41351 1.31278 1.20465 1.22103 0.71132 1.19249 0.96793 0.98727 0.93591 1.21037 0.93572 0.94473 1.00613 1.22298 0.99985 1.01575 0.93779 1.23243 0.96570 0.89259 0.99326 1.67051 1.05316 1.21415 1.26785 1.19915 0.96595 0.95392 0.91966 1.21200 0.91910 0.92715 0.95653 0.92747 0.94177 0.96465 0.90218 0.92933 0.87921 0.93089 0.90677 0.92031 0.75157 0.75119 0.80677 0.80398 0.81051 0.90148 0.93268 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.18 13.97 21.65 0.30 -56.88 16 2 C -0.01 -0.57 5.27 84.86 0.45 -0.12 16 3 Si 0.94 46.44 25.24 68.60 1.73 48.17 16 4 H -0.28 -13.26 6.74 99.48 0.67 -12.59 16 5 H -0.31 -15.40 7.11 99.48 0.71 -14.69 16 6 H -0.27 -13.02 7.11 99.48 0.71 -12.31 16 7 C -0.26 -13.88 9.93 84.03 0.83 -13.05 16 8 H 0.05 2.83 8.06 -2.91 -0.02 2.80 16 9 N -0.61 -27.61 2.16 -706.03 -1.52 -29.14 16 10 C 0.14 6.00 4.30 87.74 0.38 6.38 16 11 C -0.17 -5.61 6.75 32.14 0.22 -5.39 16 12 C 0.07 1.86 6.38 72.73 0.46 2.33 16 13 O -0.35 -10.38 9.54 -137.14 -1.31 -11.69 16 14 C 0.08 2.36 2.10 28.70 0.06 2.42 16 15 H 0.07 2.17 6.77 -2.38 -0.02 2.16 16 16 C 0.13 3.73 5.24 86.38 0.45 4.18 16 17 N -0.71 -17.51 5.42 -466.87 -2.53 -20.04 16 18 C 0.58 18.00 7.80 86.52 0.67 18.68 16 19 O -0.59 -24.41 16.96 -4.22 -0.07 -24.48 16 20 C -0.27 -6.60 6.27 -19.00 -0.12 -6.72 16 21 C 0.17 1.94 11.33 83.74 0.95 2.89 16 22 N -0.55 -4.60 5.98 -187.00 -1.12 -5.71 16 23 H 0.45 -0.30 8.96 -92.72 -0.83 -1.13 16 24 C 0.02 0.39 7.27 38.98 0.28 0.67 16 25 C -0.07 -0.72 10.19 22.53 0.23 -0.50 16 26 C -0.16 -1.81 10.09 22.38 0.23 -1.59 16 27 C 0.08 1.61 11.16 84.81 0.95 2.56 16 28 N -0.50 -14.95 10.41 -184.62 -1.92 -16.87 16 29 C 0.09 2.53 7.35 41.98 0.31 2.83 16 30 C 0.11 4.07 5.58 83.79 0.47 4.54 16 31 H 0.26 15.27 8.31 -92.71 -0.77 14.50 16 32 H 0.04 1.61 7.99 -2.38 -0.02 1.59 16 33 H 0.02 0.81 3.44 -2.39 -0.01 0.80 16 34 H 0.08 2.28 8.14 -2.38 -0.02 2.26 16 35 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 36 H 0.10 2.02 8.14 -2.39 -0.02 2.00 16 37 H 0.05 1.49 6.66 -2.39 -0.02 1.48 16 38 H 0.08 2.23 8.14 -2.38 -0.02 2.22 16 39 H 0.06 1.94 8.14 -2.39 -0.02 1.92 16 40 H 0.41 7.17 7.20 -92.70 -0.67 6.50 16 41 H 0.23 0.37 7.38 -2.91 -0.02 0.35 16 42 H 0.18 0.32 8.06 -2.91 -0.02 0.30 16 43 H 0.18 0.61 8.06 -2.91 -0.02 0.59 16 44 H 0.17 2.52 8.06 -2.91 -0.02 2.50 16 45 H 0.08 2.99 8.00 -2.38 -0.02 2.97 16 46 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 Total: -1.00 -88.55 373.42 -0.12 -88.67 By element: Atomic # 1 Polarization: 8.35 SS G_CDS: -0.50 Total: 7.86 kcal Atomic # 6 Polarization: 13.30 SS G_CDS: 6.82 Total: 20.12 kcal Atomic # 7 Polarization: -121.86 SS G_CDS: -6.79 Total: -128.65 kcal Atomic # 8 Polarization: -34.79 SS G_CDS: -1.38 Total: -36.17 kcal Atomic # 14 Polarization: 46.44 SS G_CDS: 1.73 Total: 48.17 kcal Total: -88.55 -0.12 -88.67 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001073854228.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.816 kcal (2) G-P(sol) polarization free energy of solvation -88.551 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.264 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.116 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.667 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.149 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds