Wall clock time and date at job start Wed Apr 1 2020 02:15:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42899 * 113.99748 * 2 1 4 4 H 1.09005 * 110.78176 * 31.79002 * 3 2 1 5 5 C 1.54320 * 110.72330 * 268.54715 * 3 2 1 6 6 N 1.47026 * 107.40273 * 219.52269 * 5 3 2 7 7 C 1.36936 * 125.64687 * 178.82120 * 6 5 3 8 8 H 1.08003 * 119.99609 * 174.91637 * 7 6 5 9 9 C 1.38809 * 120.00139 * 354.92806 * 7 6 5 10 10 N 1.31620 * 120.00245 * 7.07121 * 9 7 6 11 11 Si 1.86804 * 119.99872 * 187.07024 * 9 7 6 12 12 H 1.48495 * 109.46955 * 94.98548 * 11 9 7 13 13 H 1.48503 * 109.46745 * 214.98676 * 11 9 7 14 14 H 1.48498 * 109.46999 * 334.98274 * 11 9 7 15 15 C 1.47419 * 108.69996 * 358.86516 * 6 5 3 16 16 C 1.54903 * 104.83704 * 24.12919 * 15 6 5 17 17 H 1.08994 * 111.00866 * 81.06515 * 16 15 6 18 18 N 1.46503 * 111.00566 * 204.88017 * 16 15 6 19 19 C 1.34774 * 119.99954 * 273.54343 * 18 16 15 20 20 O 1.21287 * 120.00002 * 359.97438 * 19 18 16 21 21 C 1.50697 * 120.00271 * 179.97438 * 19 18 16 22 22 C 1.50700 * 109.47539 * 180.02562 * 21 19 18 23 23 C 1.33993 * 124.92498 * 89.99425 * 22 21 19 24 24 C 1.46781 * 106.18650 * 179.97438 * 23 22 21 25 25 C 1.39406 * 134.36870 * 180.02562 * 24 23 22 26 26 C 1.36747 * 119.71468 * 179.97438 * 25 24 23 27 27 C 1.38741 * 120.41371 * 0.08200 * 26 25 24 28 28 C 1.37841 * 120.69115 * 359.93436 * 27 26 25 29 29 C 1.38942 * 119.81702 * 0.02562 * 28 27 26 30 30 O 1.34452 * 124.92261 * 269.69768 * 22 21 19 31 31 H 1.09001 * 109.46989 * 59.99533 * 1 2 3 32 32 H 1.08996 * 109.46949 * 179.97438 * 1 2 3 33 33 H 1.08999 * 109.47209 * 299.99531 * 1 2 3 34 34 H 1.08994 * 109.88209 * 100.02811 * 5 3 2 35 35 H 1.09004 * 109.88353 * 339.01838 * 5 3 2 36 36 H 0.96994 * 119.99994 * 180.02562 * 10 9 7 37 37 H 1.09004 * 110.36581 * 142.96535 * 15 6 5 38 38 H 1.09001 * 110.36512 * 265.17458 * 15 6 5 39 39 H 0.96999 * 119.99805 * 93.53974 * 18 16 15 40 40 H 1.08999 * 109.47341 * 300.00090 * 21 19 18 41 41 H 1.09001 * 109.47241 * 60.00081 * 21 19 18 42 42 H 1.08001 * 126.90677 * 359.97438 * 23 22 21 43 43 H 1.07994 * 120.14763 * 359.97438 * 25 24 23 44 44 H 1.07991 * 119.79092 * 180.02562 * 26 25 24 45 45 H 1.07998 * 119.65399 * 179.97438 * 27 26 25 46 46 H 1.08002 * 120.09694 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3761 2.0111 0.5369 5 6 2.2657 1.7895 -1.4429 6 7 3.5567 2.4930 -1.4486 7 6 4.1550 3.0540 -2.5452 8 1 5.0668 3.6217 -2.4315 9 6 3.5895 2.8933 -3.8026 10 7 2.4095 2.3234 -3.9257 11 14 4.5033 3.4860 -5.3203 12 1 5.2682 2.3578 -5.9095 13 1 3.5283 3.9972 -6.3169 14 1 5.4397 4.5742 -4.9407 15 6 4.1008 2.4935 -0.0785 16 6 3.4385 1.2751 0.6118 17 1 3.9535 0.3506 0.3509 18 7 3.3929 1.4554 2.0649 19 6 4.4462 1.0906 2.8226 20 8 5.4315 0.6126 2.3014 21 6 4.3996 1.2766 4.3173 22 6 5.6918 0.7939 4.9242 23 6 6.7778 1.5537 5.1212 24 6 7.7856 0.6770 5.7295 25 6 9.0972 0.8561 6.1666 26 6 9.7826 -0.1983 6.7039 27 6 9.1812 -1.4437 6.8147 28 6 7.8854 -1.6397 6.3876 29 6 7.1711 -0.5816 5.8394 30 8 5.9202 -0.4603 5.3516 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3633 -1.0276 -0.0005 33 1 -0.3633 0.5138 0.8900 34 1 1.4718 2.4692 -1.7519 35 1 2.3061 0.9352 -2.1188 36 1 2.0146 2.2108 -4.8044 37 1 5.1841 2.3745 -0.1004 38 1 3.8316 3.4159 0.4362 39 1 2.6047 1.8374 2.4818 40 1 4.2627 2.3331 4.5479 41 1 3.5684 0.7042 4.7290 42 1 6.8891 2.6007 4.8807 43 1 9.5701 1.8232 6.0814 44 1 10.7985 -0.0608 7.0433 45 1 9.7340 -2.2679 7.2406 46 1 7.4265 -2.6132 6.4787 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001082005980.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:15:12 Heat of formation + Delta-G solvation = -14.519064 kcal Electronic energy + Delta-G solvation = -29314.609593 eV Core-core repulsion = 25172.037514 eV Total energy + Delta-G solvation = -4142.572079 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.157 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.59400 -39.76941 -38.26096 -37.93153 -35.92790 -34.09978 -33.46636 -32.01136 -31.36847 -30.57439 -28.89644 -27.88296 -26.74067 -26.15852 -24.25272 -23.17543 -22.18011 -21.50347 -20.68709 -20.51628 -19.92418 -17.62977 -17.49715 -17.13769 -16.83316 -16.42701 -15.92691 -15.78690 -15.41267 -15.15070 -14.75715 -14.44688 -14.30224 -14.22082 -13.90598 -13.62755 -13.30332 -13.25431 -13.01820 -12.84323 -12.42276 -12.41087 -12.22446 -11.93321 -11.91533 -11.55021 -11.24219 -11.10547 -11.04060 -10.82425 -10.77537 -10.29641 -10.15706 -10.00869 -9.86451 -9.79306 -9.13656 -8.82489 -8.77517 -8.59976 -8.28725 -6.90711 -5.76579 -3.10176 0.72805 1.20260 2.13863 2.50028 2.69497 3.29753 3.40583 3.45980 3.47212 3.55864 4.09607 4.11739 4.48912 4.49527 4.72165 4.74206 4.84670 4.92548 4.94815 5.06541 5.10032 5.20186 5.27524 5.36227 5.45925 5.54501 5.55506 5.62578 5.68156 5.68960 5.82727 5.91609 6.01639 6.04094 6.07282 6.12426 6.24594 6.28093 6.47480 6.49150 6.61695 6.81152 7.04759 7.21675 7.45004 7.58599 7.70200 7.83234 8.18057 8.30957 9.15414 9.75815 10.39020 11.35362 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.014021 B = 0.002353 C = 0.002109 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1996.584951 B =11895.252110 C =13276.284325 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.378 6.378 3 C 0.056 3.944 4 H 0.063 0.937 5 C 0.162 3.838 6 N -0.600 5.600 7 C -0.230 4.230 8 H 0.081 0.919 9 C -0.006 4.006 10 N -0.920 5.920 11 Si 0.913 3.087 12 H -0.288 1.288 13 H -0.291 1.291 14 H -0.280 1.280 15 C 0.131 3.869 16 C 0.135 3.865 17 H 0.104 0.896 18 N -0.714 5.714 19 C 0.513 3.487 20 O -0.524 6.524 21 C -0.069 4.069 22 C 0.060 3.940 23 C -0.193 4.193 24 C -0.126 4.126 25 C -0.071 4.071 26 C -0.139 4.139 27 C -0.098 4.098 28 C -0.107 4.107 29 C 0.056 3.944 30 O -0.188 6.188 31 H 0.046 0.954 32 H 0.079 0.921 33 H 0.033 0.967 34 H 0.047 0.953 35 H 0.064 0.936 36 H 0.253 0.747 37 H 0.051 0.949 38 H 0.023 0.977 39 H 0.397 0.603 40 H 0.128 0.872 41 H 0.115 0.885 42 H 0.158 0.842 43 H 0.127 0.873 44 H 0.128 0.872 45 H 0.133 0.867 46 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.098 -3.350 23.740 24.174 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.297 6.297 3 C -0.003 4.003 4 H 0.081 0.919 5 C 0.037 3.963 6 N -0.328 5.328 7 C -0.358 4.358 8 H 0.099 0.901 9 C -0.202 4.202 10 N -0.568 5.568 11 Si 0.743 3.257 12 H -0.215 1.215 13 H -0.218 1.218 14 H -0.205 1.205 15 C 0.004 3.996 16 C 0.030 3.970 17 H 0.122 0.878 18 N -0.365 5.365 19 C 0.297 3.703 20 O -0.399 6.399 21 C -0.108 4.108 22 C 0.012 3.988 23 C -0.212 4.212 24 C -0.127 4.127 25 C -0.089 4.089 26 C -0.157 4.157 27 C -0.116 4.116 28 C -0.125 4.125 29 C 0.009 3.991 30 O -0.090 6.090 31 H 0.065 0.935 32 H 0.098 0.902 33 H 0.052 0.948 34 H 0.065 0.935 35 H 0.082 0.918 36 H 0.064 0.936 37 H 0.069 0.931 38 H 0.040 0.960 39 H 0.231 0.769 40 H 0.146 0.854 41 H 0.133 0.867 42 H 0.176 0.824 43 H 0.145 0.855 44 H 0.146 0.854 45 H 0.151 0.849 46 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 3.686 -4.070 23.098 23.742 hybrid contribution -0.215 0.812 -0.737 1.118 sum 3.471 -3.258 22.361 22.862 Atomic orbital electron populations 1.22705 0.81629 1.02072 0.99852 1.87908 1.19188 1.27487 1.95075 1.23854 0.92523 0.84139 0.99779 0.91880 1.21599 0.88524 0.97074 0.89136 1.44253 1.19784 1.65918 1.02840 1.19071 1.06003 1.26504 0.84178 0.90117 1.24839 0.97078 1.00751 0.97539 1.69945 1.15590 1.48845 1.22377 0.86086 0.78730 0.78111 0.82783 1.21472 1.21751 1.20549 1.21823 0.97570 0.93503 0.86729 1.22421 0.96189 1.01131 0.77221 0.87828 1.45882 1.18300 1.64479 1.07859 1.20193 0.83434 0.78482 0.88160 1.90791 1.31839 1.43060 1.74177 1.20263 0.93617 1.04125 0.92828 1.21368 0.96973 0.81721 0.98768 1.22177 0.91885 1.00807 1.06331 1.19939 0.95856 0.93513 1.03420 1.20301 0.91986 0.99522 0.97107 1.20760 1.00350 0.92902 1.01700 1.20898 0.93552 0.97694 0.99428 1.19948 0.94083 0.96818 1.01683 1.19602 0.83516 0.96125 0.99888 1.83922 1.29392 1.30437 1.65231 0.93514 0.90241 0.94813 0.93535 0.91826 0.93633 0.93053 0.95956 0.76874 0.85412 0.86685 0.82420 0.85539 0.85446 0.84893 0.85112 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.47 10.88 101.05 1.10 1.57 16 2 O -0.38 -6.83 10.44 -35.23 -0.37 -7.20 16 3 C 0.06 1.03 3.04 -24.76 -0.08 0.96 16 4 H 0.06 1.00 7.75 -51.93 -0.40 0.60 16 5 C 0.16 3.89 5.15 -3.06 -0.02 3.88 16 6 N -0.60 -15.40 3.39 -170.08 -0.58 -15.98 16 7 C -0.23 -6.44 10.27 -15.06 -0.15 -6.60 16 8 H 0.08 2.20 7.84 -52.48 -0.41 1.79 16 9 C -0.01 -0.16 5.48 -17.43 -0.10 -0.25 16 10 N -0.92 -26.89 10.36 55.49 0.57 -26.31 16 11 Si 0.91 22.22 29.56 -169.99 -5.02 17.19 16 12 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 13 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 14 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 15 C 0.13 2.78 6.93 -2.54 -0.02 2.76 16 16 C 0.14 2.50 3.05 -65.65 -0.20 2.30 16 17 H 0.10 2.23 7.73 -51.93 -0.40 1.83 16 18 N -0.71 -9.75 5.23 -51.60 -0.27 -10.02 16 19 C 0.51 7.36 7.82 -10.99 -0.09 7.27 16 20 O -0.52 -10.23 15.78 5.55 0.09 -10.15 16 21 C -0.07 -0.66 6.20 -29.04 -0.18 -0.84 16 22 C 0.06 0.76 5.72 -35.80 -0.20 0.55 16 23 C -0.19 -2.38 11.01 -37.62 -0.41 -2.80 16 24 C -0.13 -1.62 6.40 -105.16 -0.67 -2.30 16 25 C -0.07 -0.74 10.05 -39.69 -0.40 -1.14 16 26 C -0.14 -1.23 9.98 -39.93 -0.40 -1.63 16 27 C -0.10 -0.86 10.01 -39.54 -0.40 -1.25 16 28 C -0.11 -1.14 10.07 -39.47 -0.40 -1.54 16 29 C 0.06 0.75 7.42 -38.47 -0.29 0.47 16 30 O -0.19 -2.69 10.58 3.90 0.04 -2.64 16 31 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 32 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 33 H 0.03 0.38 8.11 -51.93 -0.42 -0.04 16 34 H 0.05 1.20 7.61 -51.93 -0.40 0.81 16 35 H 0.06 1.75 7.20 -51.93 -0.37 1.38 16 36 H 0.25 7.18 8.31 -40.82 -0.34 6.84 16 37 H 0.05 1.15 8.14 -51.93 -0.42 0.73 16 38 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 39 H 0.40 3.93 8.52 -40.82 -0.35 3.58 16 40 H 0.13 0.77 8.14 -51.93 -0.42 0.35 16 41 H 0.11 0.82 8.14 -51.93 -0.42 0.40 16 42 H 0.16 1.59 8.06 -52.49 -0.42 1.16 16 43 H 0.13 1.05 8.06 -52.49 -0.42 0.63 16 44 H 0.13 0.78 8.06 -52.49 -0.42 0.36 16 45 H 0.13 0.76 8.06 -52.49 -0.42 0.34 16 46 H 0.13 1.13 8.06 -52.49 -0.42 0.71 16 LS Contribution 388.35 15.07 5.85 5.85 Total: -1.00 -36.05 388.35 -9.12 -45.17 By element: Atomic # 1 Polarization: 9.21 SS G_CDS: -6.54 Total: 2.67 kcal Atomic # 6 Polarization: 4.31 SS G_CDS: -2.89 Total: 1.41 kcal Atomic # 7 Polarization: -52.04 SS G_CDS: -0.27 Total: -52.31 kcal Atomic # 8 Polarization: -19.75 SS G_CDS: -0.24 Total: -19.99 kcal Atomic # 14 Polarization: 22.22 SS G_CDS: -5.02 Total: 17.19 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -36.05 -9.12 -45.17 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001082005980.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.648 kcal (2) G-P(sol) polarization free energy of solvation -36.052 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.403 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.116 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.168 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.519 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds