Wall clock time and date at job start Wed Apr 1 2020 02:15:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42899 * 113.99748 * 2 1 4 4 H 1.09005 * 110.78176 * 31.79002 * 3 2 1 5 5 C 1.54320 * 110.72330 * 268.54715 * 3 2 1 6 6 N 1.47026 * 107.40273 * 219.52269 * 5 3 2 7 7 C 1.36936 * 125.64687 * 178.82120 * 6 5 3 8 8 H 1.08003 * 119.99609 * 174.91637 * 7 6 5 9 9 C 1.38809 * 120.00139 * 354.92806 * 7 6 5 10 10 N 1.31620 * 120.00245 * 7.07121 * 9 7 6 11 11 Si 1.86804 * 119.99872 * 187.07024 * 9 7 6 12 12 H 1.48495 * 109.46955 * 94.98548 * 11 9 7 13 13 H 1.48503 * 109.46745 * 214.98676 * 11 9 7 14 14 H 1.48498 * 109.46999 * 334.98274 * 11 9 7 15 15 C 1.47419 * 108.69996 * 358.86516 * 6 5 3 16 16 C 1.54903 * 104.83704 * 24.12919 * 15 6 5 17 17 H 1.08994 * 111.00866 * 81.06515 * 16 15 6 18 18 N 1.46503 * 111.00566 * 204.88017 * 16 15 6 19 19 C 1.34774 * 119.99954 * 273.54343 * 18 16 15 20 20 O 1.21287 * 120.00002 * 359.97438 * 19 18 16 21 21 C 1.50697 * 120.00271 * 179.97438 * 19 18 16 22 22 C 1.50700 * 109.47539 * 180.02562 * 21 19 18 23 23 C 1.33993 * 124.92498 * 89.99425 * 22 21 19 24 24 C 1.46781 * 106.18650 * 179.97438 * 23 22 21 25 25 C 1.39406 * 134.36870 * 180.02562 * 24 23 22 26 26 C 1.36747 * 119.71468 * 179.97438 * 25 24 23 27 27 C 1.38741 * 120.41371 * 0.08200 * 26 25 24 28 28 C 1.37841 * 120.69115 * 359.93436 * 27 26 25 29 29 C 1.38942 * 119.81702 * 0.02562 * 28 27 26 30 30 O 1.34452 * 124.92261 * 269.69768 * 22 21 19 31 31 H 1.09001 * 109.46989 * 59.99533 * 1 2 3 32 32 H 1.08996 * 109.46949 * 179.97438 * 1 2 3 33 33 H 1.08999 * 109.47209 * 299.99531 * 1 2 3 34 34 H 1.08994 * 109.88209 * 100.02811 * 5 3 2 35 35 H 1.09004 * 109.88353 * 339.01838 * 5 3 2 36 36 H 0.96994 * 119.99994 * 180.02562 * 10 9 7 37 37 H 1.09004 * 110.36581 * 142.96535 * 15 6 5 38 38 H 1.09001 * 110.36512 * 265.17458 * 15 6 5 39 39 H 0.96999 * 119.99805 * 93.53974 * 18 16 15 40 40 H 1.08999 * 109.47341 * 300.00090 * 21 19 18 41 41 H 1.09001 * 109.47241 * 60.00081 * 21 19 18 42 42 H 1.08001 * 126.90677 * 359.97438 * 23 22 21 43 43 H 1.07994 * 120.14763 * 359.97438 * 25 24 23 44 44 H 1.07991 * 119.79092 * 180.02562 * 26 25 24 45 45 H 1.07998 * 119.65399 * 179.97438 * 27 26 25 46 46 H 1.08002 * 120.09694 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3761 2.0111 0.5369 5 6 2.2657 1.7895 -1.4429 6 7 3.5567 2.4930 -1.4486 7 6 4.1550 3.0540 -2.5452 8 1 5.0668 3.6217 -2.4315 9 6 3.5895 2.8933 -3.8026 10 7 2.4095 2.3234 -3.9257 11 14 4.5033 3.4860 -5.3203 12 1 5.2682 2.3578 -5.9095 13 1 3.5283 3.9972 -6.3169 14 1 5.4397 4.5742 -4.9407 15 6 4.1008 2.4935 -0.0785 16 6 3.4385 1.2751 0.6118 17 1 3.9535 0.3506 0.3509 18 7 3.3929 1.4554 2.0649 19 6 4.4462 1.0906 2.8226 20 8 5.4315 0.6126 2.3014 21 6 4.3996 1.2766 4.3173 22 6 5.6918 0.7939 4.9242 23 6 6.7778 1.5537 5.1212 24 6 7.7856 0.6770 5.7295 25 6 9.0972 0.8561 6.1666 26 6 9.7826 -0.1983 6.7039 27 6 9.1812 -1.4437 6.8147 28 6 7.8854 -1.6397 6.3876 29 6 7.1711 -0.5816 5.8394 30 8 5.9202 -0.4603 5.3516 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3633 -1.0276 -0.0005 33 1 -0.3633 0.5138 0.8900 34 1 1.4718 2.4692 -1.7519 35 1 2.3061 0.9352 -2.1188 36 1 2.0146 2.2108 -4.8044 37 1 5.1841 2.3745 -0.1004 38 1 3.8316 3.4159 0.4362 39 1 2.6047 1.8374 2.4818 40 1 4.2627 2.3331 4.5479 41 1 3.5684 0.7042 4.7290 42 1 6.8891 2.6007 4.8807 43 1 9.5701 1.8232 6.0814 44 1 10.7985 -0.0608 7.0433 45 1 9.7340 -2.2679 7.2406 46 1 7.4265 -2.6132 6.4787 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001082005980.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:15:11 Heat of formation + Delta-G solvation = -39.784242 kcal Electronic energy + Delta-G solvation = -29315.705174 eV Core-core repulsion = 25172.037514 eV Total energy + Delta-G solvation = -4143.667659 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.157 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -43.45137 -41.07901 -39.65543 -38.76920 -37.50714 -35.64178 -34.37748 -33.71122 -32.40628 -31.34730 -30.57237 -29.18057 -28.06902 -27.52510 -26.00785 -24.04173 -23.12825 -22.54035 -22.21129 -21.88978 -21.29124 -19.20851 -18.40911 -18.31599 -18.04872 -17.62837 -17.24915 -16.88927 -16.73267 -16.21180 -16.14969 -15.83700 -15.72570 -15.18351 -15.07110 -14.94240 -14.63407 -14.52315 -14.10663 -14.04076 -13.78363 -13.63762 -13.25920 -13.20168 -13.07671 -12.96104 -12.80107 -12.64439 -12.57895 -12.31009 -12.07475 -11.89381 -11.85382 -11.61441 -11.25224 -10.98792 -10.77452 -10.56806 -10.15453 -9.58750 -9.11238 -8.98059 -7.90996 -5.27332 -0.06909 0.40296 1.24967 1.43555 1.46941 1.54930 1.57030 1.70387 2.15843 2.45125 2.76211 2.77933 3.28807 3.30516 3.50482 3.67125 3.73235 3.90064 3.92752 4.06310 4.09407 4.14597 4.20937 4.24048 4.37257 4.39208 4.45706 4.50648 4.58752 4.60624 4.65864 4.77542 4.82847 4.89079 4.94065 4.98737 5.24931 5.30971 5.34705 5.36189 5.45760 5.48594 5.51087 5.64234 5.76450 6.12147 6.20111 6.31190 6.51609 7.02894 7.23112 7.68133 8.30737 9.19077 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.014021 B = 0.002353 C = 0.002109 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1996.584951 B =11895.252110 C =13276.284325 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.398 6.398 3 C 0.078 3.922 4 H 0.103 0.897 5 C 0.171 3.829 6 N -0.623 5.623 7 C -0.247 4.247 8 H 0.082 0.918 9 C -0.061 4.061 10 N -0.947 5.947 11 Si 0.978 3.022 12 H -0.290 1.290 13 H -0.290 1.290 14 H -0.266 1.266 15 C 0.132 3.868 16 C 0.153 3.847 17 H 0.067 0.933 18 N -0.696 5.696 19 C 0.512 3.488 20 O -0.582 6.582 21 C -0.054 4.054 22 C 0.038 3.962 23 C -0.203 4.203 24 C -0.155 4.155 25 C -0.085 4.085 26 C -0.137 4.137 27 C -0.091 4.091 28 C -0.124 4.124 29 C 0.021 3.979 30 O -0.210 6.210 31 H 0.033 0.967 32 H 0.099 0.901 33 H 0.068 0.932 34 H 0.022 0.978 35 H 0.016 0.984 36 H 0.249 0.751 37 H 0.031 0.969 38 H 0.047 0.953 39 H 0.422 0.578 40 H 0.172 0.828 41 H 0.147 0.853 42 H 0.175 0.825 43 H 0.144 0.856 44 H 0.160 0.840 45 H 0.168 0.832 46 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.279 -2.683 26.367 26.706 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.317 6.317 3 C 0.019 3.981 4 H 0.121 0.879 5 C 0.045 3.955 6 N -0.351 5.351 7 C -0.376 4.376 8 H 0.100 0.900 9 C -0.254 4.254 10 N -0.595 5.595 11 Si 0.806 3.194 12 H -0.218 1.218 13 H -0.216 1.216 14 H -0.191 1.191 15 C 0.006 3.994 16 C 0.046 3.954 17 H 0.085 0.915 18 N -0.349 5.349 19 C 0.300 3.700 20 O -0.461 6.461 21 C -0.093 4.093 22 C -0.009 4.009 23 C -0.222 4.222 24 C -0.156 4.156 25 C -0.103 4.103 26 C -0.154 4.154 27 C -0.109 4.109 28 C -0.142 4.142 29 C -0.026 4.026 30 O -0.113 6.113 31 H 0.051 0.949 32 H 0.117 0.883 33 H 0.087 0.913 34 H 0.040 0.960 35 H 0.035 0.965 36 H 0.058 0.942 37 H 0.050 0.950 38 H 0.065 0.935 39 H 0.260 0.740 40 H 0.190 0.810 41 H 0.165 0.835 42 H 0.192 0.808 43 H 0.162 0.838 44 H 0.178 0.822 45 H 0.185 0.815 46 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 3.835 -3.382 25.789 26.292 hybrid contribution -0.190 0.544 -1.493 1.601 sum 3.646 -2.839 24.296 24.731 Atomic orbital electron populations 1.22982 0.79241 1.03847 1.00873 1.87894 1.21833 1.27011 1.94957 1.23521 0.93215 0.85263 0.96144 0.87938 1.21344 0.87293 0.94619 0.92225 1.44527 1.20687 1.65761 1.04078 1.19428 1.06152 1.26542 0.85462 0.89988 1.25679 0.97943 1.01487 1.00337 1.70156 1.16807 1.50019 1.22500 0.85069 0.77593 0.77734 0.79005 1.21758 1.21593 1.19060 1.21927 0.96545 0.95679 0.85288 1.21794 0.95425 0.98104 0.80056 0.91509 1.45579 1.19421 1.64334 1.05535 1.21052 0.82181 0.76716 0.90096 1.90779 1.34121 1.45571 1.75652 1.20391 0.93360 1.07205 0.88317 1.21922 0.98359 0.81378 0.99269 1.22542 0.91908 1.01693 1.06090 1.20331 0.97104 0.93690 1.04491 1.20661 0.91395 1.01042 0.97169 1.21218 1.01578 0.92364 1.00268 1.21380 0.92810 0.98804 0.97909 1.20349 0.94977 0.96980 1.01931 1.20146 0.83713 0.97420 1.01280 1.83875 1.30093 1.31454 1.65861 0.94851 0.88258 0.91304 0.95990 0.96531 0.94160 0.95045 0.93510 0.73986 0.81032 0.83508 0.80755 0.83827 0.82250 0.81496 0.83842 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.68 10.88 113.37 1.23 1.91 16 2 O -0.40 -14.08 10.44 -148.98 -1.56 -15.64 16 3 C 0.08 2.81 3.04 31.87 0.10 2.90 16 4 H 0.10 2.92 7.75 -2.38 -0.02 2.90 16 5 C 0.17 8.50 5.15 86.73 0.45 8.94 16 6 N -0.62 -32.88 3.39 -692.01 -2.35 -35.23 16 7 C -0.25 -14.24 10.27 84.03 0.86 -13.38 16 8 H 0.08 4.55 7.84 -2.91 -0.02 4.53 16 9 C -0.06 -3.53 5.48 84.86 0.46 -3.07 16 10 N -0.95 -57.34 10.36 21.65 0.22 -57.12 16 11 Si 0.98 46.59 29.56 68.60 2.03 48.62 16 12 H -0.29 -13.87 7.11 99.48 0.71 -13.16 16 13 H -0.29 -13.62 7.11 99.48 0.71 -12.91 16 14 H -0.27 -11.94 7.11 99.48 0.71 -11.24 16 15 C 0.13 5.65 6.93 86.85 0.60 6.25 16 16 C 0.15 5.62 3.05 46.47 0.14 5.77 16 17 H 0.07 2.99 7.73 -2.39 -0.02 2.97 16 18 N -0.70 -17.51 5.23 -435.56 -2.28 -19.79 16 19 C 0.51 14.02 7.82 87.66 0.69 14.70 16 20 O -0.58 -23.22 15.78 -3.05 -0.05 -23.27 16 21 C -0.05 -0.89 6.20 29.10 0.18 -0.71 16 22 C 0.04 0.94 5.72 24.72 0.14 1.09 16 23 C -0.20 -4.95 11.01 23.54 0.26 -4.69 16 24 C -0.16 -3.99 6.40 -20.21 -0.13 -4.12 16 25 C -0.08 -1.68 10.05 22.20 0.22 -1.46 16 26 C -0.14 -2.11 9.98 22.04 0.22 -1.89 16 27 C -0.09 -1.42 10.01 22.30 0.22 -1.19 16 28 C -0.12 -2.59 10.07 22.34 0.23 -2.37 16 29 C 0.02 0.58 7.42 22.99 0.17 0.75 16 30 O -0.21 -6.10 10.58 -8.95 -0.09 -6.19 16 31 H 0.03 0.94 8.14 -2.39 -0.02 0.92 16 32 H 0.10 2.15 8.14 -2.39 -0.02 2.13 16 33 H 0.07 1.30 8.11 -2.39 -0.02 1.28 16 34 H 0.02 1.18 7.61 -2.39 -0.02 1.16 16 35 H 0.02 0.96 7.20 -2.39 -0.02 0.94 16 36 H 0.25 14.62 8.31 -92.71 -0.77 13.85 16 37 H 0.03 1.45 8.14 -2.39 -0.02 1.43 16 38 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 39 H 0.42 6.60 8.52 -92.71 -0.79 5.81 16 40 H 0.17 1.31 8.14 -2.39 -0.02 1.29 16 41 H 0.15 1.53 8.14 -2.39 -0.02 1.51 16 42 H 0.18 3.34 8.06 -2.91 -0.02 3.32 16 43 H 0.14 2.18 8.06 -2.91 -0.02 2.16 16 44 H 0.16 1.38 8.06 -2.92 -0.02 1.36 16 45 H 0.17 1.35 8.06 -2.91 -0.02 1.33 16 46 H 0.14 2.43 8.06 -2.91 -0.02 2.41 16 Total: -1.00 -85.61 388.35 2.19 -83.42 By element: Atomic # 1 Polarization: 15.54 SS G_CDS: 0.21 Total: 15.75 kcal Atomic # 6 Polarization: 3.39 SS G_CDS: 6.05 Total: 9.44 kcal Atomic # 7 Polarization: -107.74 SS G_CDS: -4.40 Total: -112.14 kcal Atomic # 8 Polarization: -43.40 SS G_CDS: -1.70 Total: -45.10 kcal Atomic # 14 Polarization: 46.59 SS G_CDS: 2.03 Total: 48.62 kcal Total: -85.61 2.19 -83.42 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001082005980.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.640 kcal (2) G-P(sol) polarization free energy of solvation -85.610 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.970 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.186 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.424 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.784 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds