Wall clock time and date at job start Wed Apr 1 2020 02:31:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86795 * 119.99995 * 2 1 4 4 H 1.48509 * 109.46939 * 179.97438 * 3 2 1 5 5 H 1.48494 * 109.47672 * 299.99696 * 3 2 1 6 6 H 1.48500 * 109.47173 * 60.00177 * 3 2 1 7 7 C 1.38809 * 119.99572 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99902 * 180.02562 * 7 2 1 9 9 N 1.36930 * 120.00350 * 0.02562 * 7 2 1 10 10 C 1.46503 * 120.00180 * 180.02562 * 9 7 2 11 11 H 1.08996 * 109.47287 * 35.00045 * 10 9 7 12 12 C 1.53003 * 109.47322 * 275.00065 * 10 9 7 13 13 C 1.52991 * 109.47160 * 179.97438 * 12 10 9 14 14 C 1.52996 * 109.47343 * 60.00382 * 13 12 10 15 15 C 1.53003 * 109.46835 * 299.99550 * 14 13 12 16 16 C 1.52995 * 109.47228 * 154.99968 * 10 9 7 17 17 H 1.09008 * 109.47261 * 60.00103 * 16 10 9 18 18 N 1.46496 * 109.47603 * 300.00095 * 16 10 9 19 19 C 1.34772 * 120.00442 * 154.99623 * 18 16 10 20 20 O 1.21604 * 120.00100 * 0.02562 * 19 18 16 21 21 C 1.47515 * 119.99948 * 180.02562 * 19 18 16 22 22 C 1.40146 * 119.94788 * 359.97438 * 21 19 18 23 23 C 1.36209 * 120.49385 * 180.02562 * 22 21 19 24 24 C 1.40022 * 120.08453 * 359.97438 * 23 22 21 25 25 N 1.35562 * 133.26780 * 179.97438 * 24 23 22 26 26 C 1.30915 * 109.71184 * 180.02562 * 25 24 23 27 27 O 1.35204 * 125.01515 * 180.02562 * 26 25 24 28 28 N 1.36255 * 109.97489 * 359.97438 * 26 25 24 29 29 H 0.97000 * 126.39776 * 179.73922 * 28 26 25 30 30 C 1.38563 * 107.20263 * 0.02562 * 28 26 25 31 31 C 1.38216 * 133.89454 * 179.97438 * 30 28 26 32 32 H 0.97003 * 119.99970 * 0.02562 * 1 2 3 33 33 H 0.97004 * 120.00111 * 0.02562 * 9 7 2 34 34 H 1.08996 * 109.46923 * 300.00203 * 12 10 9 35 35 H 1.09000 * 109.46986 * 59.99898 * 12 10 9 36 36 H 1.09010 * 109.47301 * 180.02562 * 13 12 10 37 37 H 1.09002 * 109.47394 * 299.99522 * 13 12 10 38 38 H 1.08991 * 109.47485 * 59.99746 * 14 13 12 39 39 H 1.09005 * 109.47179 * 180.02562 * 14 13 12 40 40 H 1.08996 * 109.47142 * 299.99890 * 15 14 13 41 41 H 1.09000 * 109.47141 * 179.97438 * 15 14 13 42 42 H 0.97002 * 119.99446 * 335.00399 * 18 16 10 43 43 H 1.08001 * 119.75918 * 0.02562 * 22 21 19 44 44 H 1.08000 * 119.96076 * 180.02562 * 23 22 21 45 45 H 0.96700 * 114.00257 * 269.97682 * 27 26 25 46 46 H 1.08001 * 120.20762 * 0.05223 * 31 30 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7103 1.3463 0.0006 5 1 1.8916 2.3964 -1.2124 6 1 1.8915 2.3964 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0001 9 7 1.3255 -2.3880 -0.0016 10 6 2.0580 -3.6568 -0.0016 11 1 2.9682 -3.5509 0.5886 12 6 2.4230 -4.0350 -1.4385 13 6 3.1884 -5.3597 -1.4384 14 6 2.3113 -6.4556 -0.8298 15 6 1.9463 -6.0774 0.6071 16 6 1.1803 -4.7524 0.6068 17 1 0.2700 -4.8584 0.0166 18 7 0.8308 -4.3903 1.9827 19 6 -0.2877 -4.8874 2.5469 20 8 -1.0066 -5.6368 1.9141 21 6 -0.6399 -4.5223 3.9321 22 6 0.1897 -3.6590 4.6606 23 6 -0.1245 -3.3150 5.9405 24 6 -1.2836 -3.8232 6.5395 25 7 -1.8423 -3.6652 7.7644 26 6 -2.9470 -4.3637 7.8394 27 8 -3.7519 -4.4285 8.9238 28 7 -3.1665 -5.0151 6.6629 29 1 -3.9127 -5.6007 6.4598 30 6 -2.1214 -4.6900 5.8133 31 6 -1.7990 -5.0363 4.5146 32 1 -0.4850 0.8401 -0.0004 33 1 0.3555 -2.3880 -0.0023 34 1 1.5128 -4.1409 -2.0287 35 1 3.0483 -3.2545 -1.8720 36 1 3.4489 -5.6290 -2.4621 37 1 4.0988 -5.2533 -0.8484 38 1 1.4011 -6.5620 -1.4199 39 1 2.8568 -7.3993 -0.8294 40 1 2.8565 -5.9711 1.1972 41 1 1.3210 -6.8579 1.0405 42 1 1.4043 -3.7928 2.4875 43 1 1.0849 -3.2635 4.2037 44 1 0.5207 -2.6487 6.4938 45 1 -3.5276 -5.1407 9.5382 46 1 -2.4401 -5.7006 3.9543 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001085348317.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:31:15 Heat of formation + Delta-G solvation = 1.619745 kcal Electronic energy + Delta-G solvation = -29792.936997 eV Core-core repulsion = 25683.357501 eV Total energy + Delta-G solvation = -4109.579497 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.164 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.38463 -39.92226 -38.47269 -37.76945 -36.29390 -34.04718 -33.80596 -33.45056 -31.14629 -30.23092 -30.04531 -28.70736 -27.51949 -24.07219 -23.68152 -22.96489 -22.11953 -21.74671 -21.06863 -20.25800 -19.63049 -19.30945 -18.08331 -17.55474 -17.18568 -16.63413 -15.95198 -15.78394 -15.07590 -14.74497 -14.57661 -14.25733 -14.18343 -14.07057 -13.87301 -13.64761 -13.46193 -13.27144 -12.95525 -12.64470 -12.29930 -12.20895 -12.07297 -11.69951 -11.65365 -11.07595 -10.98312 -10.92374 -10.82859 -10.75158 -10.56415 -10.32614 -10.26115 -10.13177 -9.79293 -9.65690 -9.58070 -8.92487 -8.68524 -8.58742 -8.25284 -6.98514 -5.77611 -3.07558 0.44507 1.27348 1.99966 2.26986 3.12615 3.38823 3.42133 3.47709 3.50411 3.55143 3.91311 4.27337 4.55870 4.79191 4.87052 5.01966 5.06685 5.12951 5.14809 5.18097 5.30014 5.40693 5.52960 5.55236 5.72022 5.81755 5.87337 5.89849 5.95705 5.98063 6.04448 6.11926 6.21712 6.27048 6.32734 6.39952 6.45949 6.48333 6.50583 6.57966 6.58625 6.85564 6.89618 7.08434 7.24975 7.46813 7.68380 7.89380 8.39233 8.53543 9.51314 10.07460 10.42604 11.44199 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.009678 B = 0.003196 C = 0.002539 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2892.485163 B = 8759.781761 C =11024.711755 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C -0.010 4.010 3 Si 0.903 3.097 4 H -0.281 1.281 5 H -0.293 1.293 6 H -0.292 1.292 7 C -0.241 4.241 8 H 0.071 0.929 9 N -0.722 5.722 10 C 0.173 3.827 11 H 0.051 0.949 12 C -0.133 4.133 13 C -0.120 4.120 14 C -0.114 4.114 15 C -0.124 4.124 16 C 0.141 3.859 17 H 0.085 0.915 18 N -0.699 5.699 19 C 0.562 3.438 20 O -0.549 6.549 21 C -0.107 4.107 22 C -0.084 4.084 23 C -0.070 4.070 24 C 0.079 3.921 25 N -0.487 5.487 26 C 0.454 3.546 27 O -0.442 6.442 28 N -0.597 5.597 29 H 0.424 0.576 30 C 0.043 3.957 31 C -0.044 4.044 32 H 0.254 0.746 33 H 0.385 0.615 34 H 0.057 0.943 35 H 0.065 0.935 36 H 0.054 0.946 37 H 0.058 0.942 38 H 0.062 0.938 39 H 0.057 0.943 40 H 0.062 0.938 41 H 0.062 0.938 42 H 0.403 0.597 43 H 0.140 0.860 44 H 0.139 0.861 45 H 0.410 0.590 46 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.137 -15.424 12.435 19.845 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.206 4.206 3 Si 0.735 3.265 4 H -0.206 1.206 5 H -0.220 1.220 6 H -0.219 1.219 7 C -0.372 4.372 8 H 0.088 0.912 9 N -0.362 5.362 10 C 0.062 3.938 11 H 0.069 0.931 12 C -0.174 4.174 13 C -0.158 4.158 14 C -0.152 4.152 15 C -0.163 4.163 16 C 0.036 3.964 17 H 0.104 0.896 18 N -0.348 5.348 19 C 0.349 3.651 20 O -0.428 6.428 21 C -0.112 4.112 22 C -0.105 4.105 23 C -0.090 4.090 24 C -0.040 4.040 25 N -0.218 5.218 26 C 0.150 3.850 27 O -0.244 6.244 28 N -0.222 5.222 29 H 0.264 0.736 30 C -0.065 4.065 31 C -0.066 4.066 32 H 0.064 0.936 33 H 0.219 0.781 34 H 0.076 0.924 35 H 0.084 0.916 36 H 0.073 0.927 37 H 0.076 0.924 38 H 0.080 0.920 39 H 0.076 0.924 40 H 0.080 0.920 41 H 0.081 0.919 42 H 0.240 0.760 43 H 0.157 0.843 44 H 0.156 0.844 45 H 0.269 0.731 46 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -1.486 -14.768 12.498 19.404 hybrid contribution -0.384 0.202 -0.160 0.462 sum -1.870 -14.566 12.338 19.181 Atomic orbital electron populations 1.69682 1.05070 1.25529 1.57248 1.24732 0.95424 0.97597 1.02876 0.86182 0.78776 0.84393 0.77184 1.20588 1.21980 1.21906 1.19225 0.90907 0.83959 1.43104 0.91153 1.42427 1.05829 0.99456 1.88534 1.20470 0.93918 0.85781 0.93642 0.93102 1.22218 0.99955 0.95528 0.99696 1.21583 0.98530 0.95693 0.99971 1.21471 0.99908 0.98013 0.95785 1.21886 1.00019 0.97219 0.97184 1.21348 0.99127 0.94084 0.81865 0.89647 1.45805 1.24799 1.48744 1.15424 1.17945 0.81044 0.80401 0.85725 1.90747 1.51041 1.37091 1.63937 1.19697 0.96301 1.00538 0.94632 1.20870 0.99699 0.96409 0.93544 1.19929 0.94631 0.99916 0.94508 1.18959 0.96640 0.98530 0.89881 1.70622 1.06602 1.24131 1.20494 1.20348 0.89305 0.92703 0.82627 1.84824 1.52199 1.57006 1.30365 1.43361 1.23433 1.42563 1.12806 0.73612 1.18443 0.90731 1.03384 0.93981 1.19949 0.96600 0.99589 0.90429 0.93560 0.78108 0.92449 0.91583 0.92712 0.92369 0.91965 0.92404 0.91956 0.91892 0.76042 0.84252 0.84353 0.73142 0.84314 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.39 13.06 55.49 0.72 -26.67 16 2 C -0.01 -0.27 5.50 -17.43 -0.10 -0.37 16 3 Si 0.90 21.81 29.55 -169.99 -5.02 16.78 16 4 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 5 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 6 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 7 C -0.24 -6.27 9.93 -15.06 -0.15 -6.42 16 8 H 0.07 1.78 7.83 -52.49 -0.41 1.37 16 9 N -0.72 -16.86 4.95 -53.43 -0.26 -17.12 16 10 C 0.17 3.15 2.29 -67.93 -0.16 2.99 16 11 H 0.05 0.92 8.08 -51.93 -0.42 0.50 16 12 C -0.13 -2.24 5.50 -26.73 -0.15 -2.39 16 13 C -0.12 -1.58 5.92 -26.74 -0.16 -1.74 16 14 C -0.11 -1.43 5.92 -26.73 -0.16 -1.59 16 15 C -0.12 -1.70 5.50 -26.70 -0.15 -1.84 16 16 C 0.14 2.32 1.98 -67.91 -0.13 2.19 16 17 H 0.09 1.62 7.58 -51.92 -0.39 1.22 16 18 N -0.70 -11.13 4.86 -54.83 -0.27 -11.40 16 19 C 0.56 9.37 7.73 -12.48 -0.10 9.27 16 20 O -0.55 -10.56 15.99 5.27 0.08 -10.47 16 21 C -0.11 -1.55 5.88 -104.92 -0.62 -2.16 16 22 C -0.08 -1.10 9.46 -39.60 -0.37 -1.47 16 23 C -0.07 -0.90 10.03 -39.64 -0.40 -1.30 16 24 C 0.08 1.09 7.22 -84.61 -0.61 0.48 16 25 N -0.49 -6.61 11.29 -12.18 -0.14 -6.74 16 26 C 0.45 4.79 9.39 -88.91 -0.83 3.95 16 27 O -0.44 -3.21 13.62 -17.31 -0.24 -3.45 16 28 N -0.60 -5.65 6.27 -11.94 -0.07 -5.72 16 29 H 0.42 2.55 8.96 -40.82 -0.37 2.18 16 30 C 0.04 0.54 7.28 -83.89 -0.61 -0.08 16 31 C -0.04 -0.58 9.61 -39.11 -0.38 -0.96 16 32 H 0.25 7.35 8.31 -40.82 -0.34 7.02 16 33 H 0.38 10.01 7.80 -40.82 -0.32 9.69 16 34 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 35 H 0.07 1.21 8.14 -51.93 -0.42 0.78 16 36 H 0.05 0.66 8.14 -51.92 -0.42 0.24 16 37 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 38 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 39 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 40 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 41 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 42 H 0.40 6.01 6.60 -40.82 -0.27 5.74 16 43 H 0.14 1.62 6.36 -52.49 -0.33 1.29 16 44 H 0.14 1.53 8.06 -52.49 -0.42 1.11 16 45 H 0.41 0.60 9.06 45.56 0.41 1.01 16 46 H 0.14 1.74 7.64 -52.49 -0.40 1.34 16 LS Contribution 381.46 15.07 5.75 5.75 Total: -1.00 -34.38 381.46 -9.95 -44.33 By element: Atomic # 1 Polarization: 21.61 SS G_CDS: -5.44 Total: 16.17 kcal Atomic # 6 Polarization: 3.62 SS G_CDS: -5.06 Total: -1.45 kcal Atomic # 7 Polarization: -67.64 SS G_CDS: -0.02 Total: -67.66 kcal Atomic # 8 Polarization: -13.77 SS G_CDS: -0.15 Total: -13.92 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.02 Total: 16.78 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -34.38 -9.95 -44.33 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085348317.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.945 kcal (2) G-P(sol) polarization free energy of solvation -34.377 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.568 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.948 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.325 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.620 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds