Wall clock time and date at job start Wed Apr 1 2020 02:31:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86795 * 119.99995 * 2 1 4 4 H 1.48509 * 109.46939 * 179.97438 * 3 2 1 5 5 H 1.48494 * 109.47672 * 299.99696 * 3 2 1 6 6 H 1.48500 * 109.47173 * 60.00177 * 3 2 1 7 7 C 1.38809 * 119.99572 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99902 * 180.02562 * 7 2 1 9 9 N 1.36930 * 120.00350 * 0.02562 * 7 2 1 10 10 C 1.46503 * 120.00180 * 180.02562 * 9 7 2 11 11 H 1.08996 * 109.47287 * 35.00045 * 10 9 7 12 12 C 1.53003 * 109.47322 * 275.00065 * 10 9 7 13 13 C 1.52991 * 109.47160 * 179.97438 * 12 10 9 14 14 C 1.52996 * 109.47343 * 60.00382 * 13 12 10 15 15 C 1.53003 * 109.46835 * 299.99550 * 14 13 12 16 16 C 1.52995 * 109.47228 * 154.99968 * 10 9 7 17 17 H 1.09008 * 109.47261 * 60.00103 * 16 10 9 18 18 N 1.46496 * 109.47603 * 300.00095 * 16 10 9 19 19 C 1.34772 * 120.00442 * 154.99623 * 18 16 10 20 20 O 1.21604 * 120.00100 * 0.02562 * 19 18 16 21 21 C 1.47515 * 119.99948 * 180.02562 * 19 18 16 22 22 C 1.40146 * 119.94788 * 359.97438 * 21 19 18 23 23 C 1.36209 * 120.49385 * 180.02562 * 22 21 19 24 24 C 1.40022 * 120.08453 * 359.97438 * 23 22 21 25 25 N 1.35562 * 133.26780 * 179.97438 * 24 23 22 26 26 C 1.30915 * 109.71184 * 180.02562 * 25 24 23 27 27 O 1.35204 * 125.01515 * 180.02562 * 26 25 24 28 28 N 1.36255 * 109.97489 * 359.97438 * 26 25 24 29 29 H 0.97000 * 126.39776 * 179.73922 * 28 26 25 30 30 C 1.38563 * 107.20263 * 0.02562 * 28 26 25 31 31 C 1.38216 * 133.89454 * 179.97438 * 30 28 26 32 32 H 0.97003 * 119.99970 * 0.02562 * 1 2 3 33 33 H 0.97004 * 120.00111 * 0.02562 * 9 7 2 34 34 H 1.08996 * 109.46923 * 300.00203 * 12 10 9 35 35 H 1.09000 * 109.46986 * 59.99898 * 12 10 9 36 36 H 1.09010 * 109.47301 * 180.02562 * 13 12 10 37 37 H 1.09002 * 109.47394 * 299.99522 * 13 12 10 38 38 H 1.08991 * 109.47485 * 59.99746 * 14 13 12 39 39 H 1.09005 * 109.47179 * 180.02562 * 14 13 12 40 40 H 1.08996 * 109.47142 * 299.99890 * 15 14 13 41 41 H 1.09000 * 109.47141 * 179.97438 * 15 14 13 42 42 H 0.97002 * 119.99446 * 335.00399 * 18 16 10 43 43 H 1.08001 * 119.75918 * 0.02562 * 22 21 19 44 44 H 1.08000 * 119.96076 * 180.02562 * 23 22 21 45 45 H 0.96700 * 114.00257 * 269.97682 * 27 26 25 46 46 H 1.08001 * 120.20762 * 0.05223 * 31 30 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7103 1.3463 0.0006 5 1 1.8916 2.3964 -1.2124 6 1 1.8915 2.3964 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0001 9 7 1.3255 -2.3880 -0.0016 10 6 2.0580 -3.6568 -0.0016 11 1 2.9682 -3.5509 0.5886 12 6 2.4230 -4.0350 -1.4385 13 6 3.1884 -5.3597 -1.4384 14 6 2.3113 -6.4556 -0.8298 15 6 1.9463 -6.0774 0.6071 16 6 1.1803 -4.7524 0.6068 17 1 0.2700 -4.8584 0.0166 18 7 0.8308 -4.3903 1.9827 19 6 -0.2877 -4.8874 2.5469 20 8 -1.0066 -5.6368 1.9141 21 6 -0.6399 -4.5223 3.9321 22 6 0.1897 -3.6590 4.6606 23 6 -0.1245 -3.3150 5.9405 24 6 -1.2836 -3.8232 6.5395 25 7 -1.8423 -3.6652 7.7644 26 6 -2.9470 -4.3637 7.8394 27 8 -3.7519 -4.4285 8.9238 28 7 -3.1665 -5.0151 6.6629 29 1 -3.9127 -5.6007 6.4598 30 6 -2.1214 -4.6900 5.8133 31 6 -1.7990 -5.0363 4.5146 32 1 -0.4850 0.8401 -0.0004 33 1 0.3555 -2.3880 -0.0023 34 1 1.5128 -4.1409 -2.0287 35 1 3.0483 -3.2545 -1.8720 36 1 3.4489 -5.6290 -2.4621 37 1 4.0988 -5.2533 -0.8484 38 1 1.4011 -6.5620 -1.4199 39 1 2.8568 -7.3993 -0.8294 40 1 2.8565 -5.9711 1.1972 41 1 1.3210 -6.8579 1.0405 42 1 1.4043 -3.7928 2.4875 43 1 1.0849 -3.2635 4.2037 44 1 0.5207 -2.6487 6.4938 45 1 -3.5276 -5.1407 9.5382 46 1 -2.4401 -5.7006 3.9543 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001085348317.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:31:15 Heat of formation + Delta-G solvation = -26.236266 kcal Electronic energy + Delta-G solvation = -29794.144925 eV Core-core repulsion = 25683.357501 eV Total energy + Delta-G solvation = -4110.787424 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.164 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -43.29300 -41.20175 -39.52238 -38.81415 -37.26355 -35.77665 -35.14359 -34.38653 -32.95784 -31.27224 -31.13570 -29.98093 -28.97594 -25.64957 -25.04323 -23.92402 -23.24536 -22.73609 -22.44788 -21.51350 -20.86300 -20.08627 -19.36397 -18.89600 -18.46956 -17.71524 -17.17505 -16.91941 -16.57664 -15.99820 -15.81790 -15.54870 -15.37350 -15.14736 -15.03918 -15.00662 -14.67680 -14.57049 -14.25365 -14.02976 -13.60043 -13.48157 -13.06666 -12.88165 -12.83492 -12.67536 -12.64894 -12.16678 -12.12255 -11.99012 -11.97563 -11.91834 -11.61548 -11.39847 -11.21822 -11.13234 -10.99694 -10.77362 -9.97279 -9.58121 -9.26606 -8.95333 -7.87546 -5.16002 -0.54608 0.27389 1.16433 1.37148 1.50579 1.51555 1.60629 1.97131 2.24370 2.60040 2.67148 2.81649 3.39872 3.46450 3.69014 3.75666 3.87073 3.95692 4.07069 4.13714 4.18978 4.19803 4.29745 4.36475 4.45635 4.49235 4.55117 4.63926 4.74240 4.92452 4.99242 5.05851 5.09102 5.20813 5.24773 5.26167 5.28542 5.33691 5.35379 5.50671 5.56440 5.58763 5.61872 5.72608 5.86434 6.32156 6.56347 6.60502 6.63700 7.24242 7.39332 8.13451 8.37258 9.35598 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.009678 B = 0.003196 C = 0.002539 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2892.485163 B = 8759.781761 C =11024.711755 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.969 5.969 2 C -0.074 4.074 3 Si 0.965 3.035 4 H -0.262 1.262 5 H -0.302 1.302 6 H -0.298 1.298 7 C -0.226 4.226 8 H 0.081 0.919 9 N -0.732 5.732 10 C 0.171 3.829 11 H 0.061 0.939 12 C -0.128 4.128 13 C -0.110 4.110 14 C -0.110 4.110 15 C -0.115 4.115 16 C 0.148 3.852 17 H 0.055 0.945 18 N -0.696 5.696 19 C 0.560 3.440 20 O -0.582 6.582 21 C -0.128 4.128 22 C -0.082 4.082 23 C -0.077 4.077 24 C 0.067 3.933 25 N -0.525 5.525 26 C 0.475 3.525 27 O -0.439 6.439 28 N -0.582 5.582 29 H 0.441 0.559 30 C 0.036 3.964 31 C -0.040 4.040 32 H 0.246 0.754 33 H 0.368 0.632 34 H 0.040 0.960 35 H 0.050 0.950 36 H 0.072 0.928 37 H 0.073 0.927 38 H 0.053 0.947 39 H 0.087 0.913 40 H 0.080 0.920 41 H 0.058 0.942 42 H 0.409 0.591 43 H 0.149 0.851 44 H 0.153 0.847 45 H 0.438 0.562 46 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.202 -16.753 13.678 21.628 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.620 5.620 2 C -0.266 4.266 3 Si 0.795 3.205 4 H -0.187 1.187 5 H -0.230 1.230 6 H -0.225 1.225 7 C -0.358 4.358 8 H 0.098 0.902 9 N -0.370 5.370 10 C 0.063 3.937 11 H 0.079 0.921 12 C -0.169 4.169 13 C -0.148 4.148 14 C -0.148 4.148 15 C -0.154 4.154 16 C 0.043 3.957 17 H 0.073 0.927 18 N -0.345 5.345 19 C 0.349 3.651 20 O -0.464 6.464 21 C -0.133 4.133 22 C -0.103 4.103 23 C -0.096 4.096 24 C -0.052 4.052 25 N -0.257 5.257 26 C 0.170 3.830 27 O -0.245 6.245 28 N -0.208 5.208 29 H 0.284 0.716 30 C -0.073 4.073 31 C -0.061 4.061 32 H 0.055 0.945 33 H 0.200 0.800 34 H 0.059 0.941 35 H 0.069 0.931 36 H 0.090 0.910 37 H 0.091 0.909 38 H 0.071 0.929 39 H 0.105 0.895 40 H 0.099 0.901 41 H 0.077 0.923 42 H 0.246 0.754 43 H 0.167 0.833 44 H 0.171 0.829 45 H 0.301 0.699 46 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -0.104 -16.169 13.764 21.234 hybrid contribution -0.881 0.527 -0.430 1.113 sum -0.985 -15.642 13.334 20.578 Atomic orbital electron populations 1.69848 1.06659 1.25508 1.60007 1.25450 0.96082 1.00747 1.04316 0.85190 0.78550 0.80558 0.76167 1.18657 1.23004 1.22549 1.19601 0.91392 0.84769 1.40001 0.90153 1.42599 1.05180 1.00753 1.88502 1.20691 0.93935 0.84237 0.94879 0.92082 1.22090 0.99488 0.97488 0.97834 1.21517 0.98413 0.93336 1.01528 1.21477 0.99821 0.99045 0.94502 1.21826 1.00117 0.94962 0.98488 1.21220 0.97795 0.95074 0.81651 0.92707 1.45794 1.24846 1.48702 1.15173 1.18277 0.80601 0.79786 0.86463 1.90716 1.51982 1.38704 1.64974 1.19588 0.97646 1.02313 0.93769 1.20926 0.99780 0.96019 0.93618 1.20106 0.94889 1.00162 0.94461 1.19243 0.97041 0.98652 0.90304 1.70613 1.08343 1.26119 1.20671 1.20417 0.88293 0.90921 0.83352 1.84801 1.51332 1.58530 1.29872 1.43278 1.23223 1.42292 1.11988 0.71596 1.18375 0.91600 1.03492 0.93816 1.19969 0.96179 0.99214 0.90770 0.94488 0.80037 0.94136 0.93138 0.90973 0.90872 0.92853 0.89470 0.90115 0.92307 0.75436 0.83334 0.82918 0.69862 0.84026 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -58.91 13.06 21.65 0.28 -58.63 16 2 C -0.07 -4.11 5.50 84.86 0.47 -3.64 16 3 Si 0.96 45.27 29.55 68.60 2.03 47.30 16 4 H -0.26 -11.36 7.11 99.48 0.71 -10.65 16 5 H -0.30 -14.52 7.11 99.48 0.71 -13.82 16 6 H -0.30 -14.14 7.11 99.48 0.71 -13.43 16 7 C -0.23 -11.76 9.93 84.03 0.83 -10.92 16 8 H 0.08 3.97 7.83 -2.91 -0.02 3.95 16 9 N -0.73 -34.71 4.95 -322.95 -1.60 -36.31 16 10 C 0.17 6.19 2.29 44.99 0.10 6.29 16 11 H 0.06 2.11 8.08 -2.39 -0.02 2.09 16 12 C -0.13 -4.24 5.50 30.59 0.17 -4.08 16 13 C -0.11 -2.62 5.92 30.59 0.18 -2.44 16 14 C -0.11 -2.51 5.92 30.59 0.18 -2.33 16 15 C -0.11 -2.96 5.50 30.61 0.17 -2.79 16 16 C 0.15 4.89 1.98 45.01 0.09 4.98 16 17 H 0.05 2.16 7.58 -2.38 -0.02 2.15 16 18 N -0.70 -22.45 4.86 -445.63 -2.16 -24.62 16 19 C 0.56 19.17 7.73 86.69 0.67 19.84 16 20 O -0.58 -23.14 15.99 -4.04 -0.06 -23.20 16 21 C -0.13 -3.78 5.88 -20.06 -0.12 -3.90 16 22 C -0.08 -2.15 9.46 22.26 0.21 -1.94 16 23 C -0.08 -1.94 10.03 22.23 0.22 -1.72 16 24 C 0.07 1.81 7.22 39.61 0.29 2.09 16 25 N -0.52 -13.64 11.29 -306.25 -3.46 -17.09 16 26 C 0.47 9.08 9.39 179.75 1.69 10.77 16 27 O -0.44 -5.18 13.62 -84.84 -1.16 -6.33 16 28 N -0.58 -10.03 6.27 -302.69 -1.90 -11.93 16 29 H 0.44 4.39 8.96 -92.71 -0.83 3.56 16 30 C 0.04 0.88 7.28 38.68 0.28 1.16 16 31 C -0.04 -1.06 9.61 22.58 0.22 -0.84 16 32 H 0.25 14.73 8.31 -92.71 -0.77 13.96 16 33 H 0.37 19.87 7.80 -92.71 -0.72 19.15 16 34 H 0.04 1.46 8.14 -2.39 -0.02 1.44 16 35 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 36 H 0.07 1.52 8.14 -2.38 -0.02 1.50 16 37 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 38 H 0.05 1.32 8.14 -2.39 -0.02 1.30 16 39 H 0.09 1.55 8.14 -2.38 -0.02 1.53 16 40 H 0.08 1.81 8.14 -2.39 -0.02 1.79 16 41 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16 42 H 0.41 12.17 6.60 -92.71 -0.61 11.56 16 43 H 0.15 3.45 6.36 -2.91 -0.02 3.43 16 44 H 0.15 3.29 8.06 -2.91 -0.02 3.27 16 45 H 0.44 -0.13 9.06 -74.06 -0.67 -0.80 16 46 H 0.14 3.60 7.64 -2.91 -0.02 3.58 16 Total: -1.00 -75.68 381.46 -4.15 -79.83 By element: Atomic # 1 Polarization: 42.22 SS G_CDS: -1.77 Total: 40.45 kcal Atomic # 6 Polarization: 4.88 SS G_CDS: 5.65 Total: 10.53 kcal Atomic # 7 Polarization: -139.74 SS G_CDS: -8.84 Total: -148.58 kcal Atomic # 8 Polarization: -28.31 SS G_CDS: -1.22 Total: -29.53 kcal Atomic # 14 Polarization: 45.27 SS G_CDS: 2.03 Total: 47.30 kcal Total: -75.68 -4.15 -79.83 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085348317.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.593 kcal (2) G-P(sol) polarization free energy of solvation -75.682 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.089 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.147 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.829 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.236 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds