Wall clock time and date at job start Wed Apr 1 2020 02:52:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86800 * 119.99918 * 2 1 4 4 H 1.48501 * 109.47057 * 179.97438 * 3 2 1 5 5 H 1.48504 * 109.47102 * 299.99508 * 3 2 1 6 6 H 1.48500 * 109.47389 * 59.99856 * 3 2 1 7 7 C 1.38812 * 120.00227 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00285 * 179.97438 * 7 2 1 9 9 N 1.36945 * 119.99637 * 0.02562 * 7 2 1 10 10 C 1.46494 * 119.99612 * 179.97438 * 9 7 2 11 11 H 1.08999 * 110.67274 * 31.77236 * 10 9 7 12 12 C 1.54885 * 110.76220 * 268.32842 * 10 9 7 13 13 C 1.54263 * 104.19972 * 203.74728 * 12 10 9 14 14 C 1.53872 * 106.59900 * 23.61133 * 13 12 10 15 15 H 1.09008 * 110.03328 * 240.71741 * 14 13 12 16 16 C 1.52993 * 110.07347 * 119.30682 * 14 13 12 17 17 N 1.46507 * 109.47290 * 67.81104 * 16 14 13 18 18 C 1.34774 * 120.00199 * 180.02562 * 17 16 14 19 19 O 1.21591 * 120.00073 * 359.97438 * 18 17 16 20 20 C 1.47524 * 119.99834 * 180.02562 * 18 17 16 21 21 C 1.39528 * 120.24567 * 359.97438 * 20 18 17 22 22 C 1.38210 * 120.26741 * 179.97438 * 21 20 18 23 23 C 1.37974 * 120.70002 * 0.02562 * 22 21 20 24 24 C 1.39595 * 120.11902 * 359.97438 * 23 22 21 25 25 N 1.35981 * 133.39769 * 180.02562 * 24 23 22 26 26 C 1.30735 * 109.51749 * 179.97438 * 25 24 23 27 27 O 1.35280 * 125.05902 * 179.97438 * 26 25 24 28 28 N 1.36478 * 109.88838 * 359.97438 * 26 25 24 29 29 H 0.96998 * 126.32413 * 179.97438 * 28 26 25 30 30 C 1.37851 * 107.34788 * 359.78867 * 28 26 25 31 31 C 1.54264 * 106.59758 * 359.97438 * 14 13 12 32 32 H 0.97005 * 120.00046 * 0.02562 * 1 2 3 33 33 H 0.96995 * 120.00043 * 359.72565 * 9 7 2 34 34 H 1.08993 * 110.48700 * 322.43021 * 12 10 9 35 35 H 1.09004 * 110.48334 * 85.06845 * 12 10 9 36 36 H 1.09009 * 110.03267 * 264.32650 * 13 12 10 37 37 H 1.08998 * 110.07503 * 142.91787 * 13 12 10 38 38 H 1.09001 * 109.47395 * 187.80518 * 16 14 13 39 39 H 1.08996 * 109.47452 * 307.81141 * 16 14 13 40 40 H 0.97000 * 119.99541 * 359.97438 * 17 16 14 41 41 H 1.08004 * 119.87021 * 0.02562 * 21 20 18 42 42 H 1.07997 * 119.65011 * 180.02562 * 22 21 20 43 43 H 1.08006 * 119.93685 * 179.97438 * 23 22 21 44 44 H 0.96693 * 114.00313 * 90.02425 * 27 26 25 45 45 H 1.09005 * 110.48840 * 217.71210 * 31 14 13 46 46 H 1.08997 * 110.48668 * 95.06883 * 31 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8915 2.3964 -1.2126 6 1 1.8914 2.3965 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0001 9 7 1.3255 -2.3881 0.0005 10 6 2.0580 -3.6567 0.0005 11 1 3.0013 -3.5564 0.5375 12 6 2.2960 -4.1533 -1.4471 13 6 2.4851 -5.6771 -1.2982 14 6 1.7855 -6.0809 0.0114 15 1 2.5076 -6.5179 0.7012 16 6 0.6659 -7.0825 -0.2786 17 7 1.2480 -8.3467 -0.7362 18 6 0.4459 -9.3824 -1.0529 19 8 -0.7609 -9.2678 -0.9585 20 6 1.0322 -10.6555 -1.5131 21 6 2.4163 -10.7928 -1.6229 22 6 2.9661 -11.9856 -2.0535 23 6 2.1590 -13.0556 -2.3811 24 6 0.7713 -12.9431 -2.2797 25 7 -0.2558 -13.8000 -2.5243 26 6 -1.3915 -13.2046 -2.2695 27 8 -2.6130 -13.7696 -2.4063 28 7 -1.1615 -11.9281 -1.8449 29 1 -1.8342 -11.2765 -1.5925 30 6 0.2038 -11.7373 -1.8370 31 6 1.1962 -4.7884 0.6129 32 1 -0.4850 0.8401 -0.0004 33 1 0.3556 -2.3881 0.0042 34 1 1.4301 -3.9357 -2.0722 35 1 3.1934 -3.6965 -1.8644 36 1 3.5469 -5.9180 -1.2440 37 1 2.0275 -6.1950 -2.1410 38 1 0.0892 -7.2560 0.6299 39 1 0.0119 -6.6823 -1.0532 40 1 2.2108 -8.4380 -0.8119 41 1 3.0609 -9.9641 -1.3695 42 1 4.0388 -12.0810 -2.1344 43 1 2.6017 -13.9818 -2.7167 44 1 -2.9302 -14.2183 -1.6107 45 1 1.2906 -4.7953 1.6989 46 1 0.1525 -4.6729 0.3206 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001086719768.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:52:15 Heat of formation + Delta-G solvation = -0.131205 kcal Electronic energy + Delta-G solvation = -28652.278570 eV Core-core repulsion = 24542.623147 eV Total energy + Delta-G solvation = -4109.655423 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.164 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.66316 -40.09467 -38.56089 -38.07701 -36.86827 -35.06474 -33.62851 -33.42076 -31.18475 -30.44166 -29.43408 -28.92105 -27.31071 -25.00736 -23.77372 -23.11816 -22.77308 -22.44016 -20.90524 -19.83867 -19.51402 -19.25390 -18.19556 -18.06287 -17.16096 -16.92789 -16.30255 -16.23139 -15.74991 -15.22110 -14.95391 -14.93619 -14.66263 -14.34954 -14.17751 -13.84837 -13.40678 -13.05564 -12.93191 -12.82643 -12.54174 -12.29909 -12.12904 -12.07240 -11.87635 -11.21037 -11.17704 -10.92441 -10.82307 -10.71986 -10.64852 -10.61153 -10.32528 -10.18365 -10.13788 -9.85675 -9.68679 -9.32487 -8.90742 -8.86803 -8.63654 -6.96765 -5.78809 -3.07498 0.05924 0.96771 1.78844 2.12004 2.69403 2.87746 3.29331 3.41446 3.43883 3.46993 3.49349 4.06339 4.34068 4.39491 4.56532 4.64257 4.73118 4.77815 4.87077 4.87848 5.01121 5.18875 5.40491 5.47113 5.49568 5.61102 5.66125 5.70563 5.83667 5.84800 5.89723 5.91741 5.95959 5.99586 6.14557 6.21707 6.27459 6.29248 6.31956 6.41743 6.52958 6.67044 6.84083 7.07398 7.13734 7.22374 7.24988 7.68882 7.89332 8.40030 9.50979 10.09695 10.43504 11.43849 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.025720 B = 0.001761 C = 0.001679 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1088.377892 B =15891.993356 C =16675.702971 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.015 4.015 3 Si 0.906 3.094 4 H -0.280 1.280 5 H -0.292 1.292 6 H -0.292 1.292 7 C -0.239 4.239 8 H 0.071 0.929 9 N -0.721 5.721 10 C 0.177 3.823 11 H 0.056 0.944 12 C -0.144 4.144 13 C -0.121 4.121 14 C -0.101 4.101 15 H 0.074 0.926 16 C 0.126 3.874 17 N -0.716 5.716 18 C 0.559 3.441 19 O -0.551 6.551 20 C -0.127 4.127 21 C -0.060 4.060 22 C -0.134 4.134 23 C -0.034 4.034 24 C 0.046 3.954 25 N -0.484 5.484 26 C 0.453 3.547 27 O -0.441 6.441 28 N -0.584 5.584 29 H 0.435 0.565 30 C 0.111 3.889 31 C -0.123 4.123 32 H 0.255 0.745 33 H 0.384 0.616 34 H 0.063 0.937 35 H 0.056 0.944 36 H 0.058 0.942 37 H 0.057 0.943 38 H 0.069 0.931 39 H 0.073 0.927 40 H 0.401 0.599 41 H 0.137 0.863 42 H 0.141 0.859 43 H 0.138 0.862 44 H 0.412 0.588 45 H 0.064 0.936 46 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.857 -29.749 -2.012 30.065 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.211 4.211 3 Si 0.737 3.263 4 H -0.206 1.206 5 H -0.219 1.219 6 H -0.219 1.219 7 C -0.371 4.371 8 H 0.089 0.911 9 N -0.360 5.360 10 C 0.066 3.934 11 H 0.074 0.926 12 C -0.185 4.185 13 C -0.159 4.159 14 C -0.120 4.120 15 H 0.093 0.907 16 C 0.003 3.997 17 N -0.367 5.367 18 C 0.347 3.653 19 O -0.431 6.431 20 C -0.133 4.133 21 C -0.080 4.080 22 C -0.154 4.154 23 C -0.054 4.054 24 C -0.072 4.072 25 N -0.216 5.216 26 C 0.149 3.851 27 O -0.243 6.243 28 N -0.208 5.208 29 H 0.277 0.723 30 C -0.003 4.003 31 C -0.162 4.162 32 H 0.065 0.935 33 H 0.218 0.782 34 H 0.081 0.919 35 H 0.075 0.925 36 H 0.077 0.923 37 H 0.076 0.924 38 H 0.087 0.913 39 H 0.091 0.909 40 H 0.237 0.763 41 H 0.155 0.845 42 H 0.159 0.841 43 H 0.156 0.844 44 H 0.271 0.729 45 H 0.083 0.917 46 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 3.128 -30.168 -2.792 30.458 hybrid contribution -0.148 1.819 0.722 1.963 sum 2.980 -28.349 -2.070 28.581 Atomic orbital electron populations 1.69671 1.05111 1.25561 1.57729 1.24759 0.95527 0.97746 1.03044 0.86128 0.78772 0.84169 0.77181 1.20559 1.21893 1.21887 1.19308 0.91029 0.84152 1.42563 0.91110 1.42398 1.05773 0.99801 1.88055 1.21153 0.94318 0.85596 0.92301 0.92608 1.23073 1.01399 0.92706 1.01303 1.22220 0.99412 0.98152 0.96135 1.21970 0.96466 0.95606 0.98004 0.90727 1.21635 0.96143 0.81893 1.00021 1.45948 1.10295 1.13185 1.67280 1.18115 0.86506 0.83409 0.77317 1.90716 1.14398 1.83459 1.54492 1.18889 0.92984 0.92535 1.08899 1.21191 0.92210 0.98270 0.96306 1.20874 1.00407 0.92363 1.01754 1.20491 0.89117 0.99442 0.96358 1.18819 0.93914 0.89754 1.04716 1.70750 0.95836 1.30116 1.24877 1.20410 0.86693 0.81405 0.96630 1.84839 1.26691 1.71820 1.40908 1.43540 1.07310 1.14521 1.55412 0.72254 1.18327 0.82888 0.96463 1.02608 1.22612 1.00515 0.93293 0.99792 0.93547 0.78202 0.91856 0.92524 0.92332 0.92386 0.91285 0.90895 0.76346 0.84493 0.84136 0.84417 0.72935 0.91709 0.91249 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.05 13.06 55.49 0.72 -27.33 16 2 C -0.01 -0.42 5.50 -17.43 -0.10 -0.52 16 3 Si 0.91 22.23 29.55 -169.99 -5.02 17.20 16 4 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 5 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 6 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 7 C -0.24 -6.55 9.96 -15.06 -0.15 -6.70 16 8 H 0.07 1.88 7.83 -52.49 -0.41 1.47 16 9 N -0.72 -17.69 5.23 -51.51 -0.27 -17.96 16 10 C 0.18 3.33 3.56 -65.95 -0.23 3.10 16 11 H 0.06 1.07 8.09 -51.93 -0.42 0.65 16 12 C -0.14 -2.40 6.51 -25.08 -0.16 -2.56 16 13 C -0.12 -1.46 6.19 -25.62 -0.16 -1.62 16 14 C -0.10 -1.17 2.96 -89.51 -0.26 -1.43 16 15 H 0.07 0.74 8.14 -51.92 -0.42 0.32 16 16 C 0.13 1.44 4.69 -4.04 -0.02 1.42 16 17 N -0.72 -6.86 5.30 -61.35 -0.32 -7.18 16 18 C 0.56 6.41 7.76 -12.48 -0.10 6.32 16 19 O -0.55 -7.98 15.27 5.29 0.08 -7.90 16 20 C -0.13 -1.24 5.88 -104.95 -0.62 -1.85 16 21 C -0.06 -0.40 9.53 -39.11 -0.37 -0.77 16 22 C -0.13 -0.77 9.99 -39.69 -0.40 -1.16 16 23 C -0.03 -0.26 10.09 -39.17 -0.40 -0.65 16 24 C 0.05 0.48 7.22 -84.70 -0.61 -0.13 16 25 N -0.48 -5.48 11.32 -12.24 -0.14 -5.62 16 26 C 0.45 4.42 9.40 -88.85 -0.83 3.59 16 27 O -0.44 -3.03 13.63 -17.53 -0.24 -3.27 16 28 N -0.58 -5.89 6.03 -11.70 -0.07 -5.96 16 29 H 0.44 4.18 7.71 -40.82 -0.31 3.87 16 30 C 0.11 1.19 6.88 -83.65 -0.58 0.62 16 31 C -0.12 -1.87 5.98 -25.08 -0.15 -2.02 16 32 H 0.25 7.41 8.31 -40.82 -0.34 7.07 16 33 H 0.38 10.08 7.76 -40.82 -0.32 9.76 16 34 H 0.06 1.17 8.14 -51.93 -0.42 0.74 16 35 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 36 H 0.06 0.61 8.14 -51.92 -0.42 0.19 16 37 H 0.06 0.67 7.62 -51.93 -0.40 0.28 16 38 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 39 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 40 H 0.40 2.73 6.38 -40.82 -0.26 2.47 16 41 H 0.14 0.53 6.39 -52.48 -0.34 0.19 16 42 H 0.14 0.39 8.06 -52.49 -0.42 -0.03 16 43 H 0.14 0.77 8.06 -52.48 -0.42 0.34 16 44 H 0.41 0.51 9.06 45.56 0.41 0.92 16 45 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 46 H 0.07 1.12 7.73 -51.93 -0.40 0.72 16 LS Contribution 382.78 15.07 5.77 5.77 Total: -1.00 -35.48 382.78 -10.01 -45.49 By element: Atomic # 1 Polarization: 16.51 SS G_CDS: -5.38 Total: 11.13 kcal Atomic # 6 Polarization: 0.76 SS G_CDS: -5.14 Total: -4.38 kcal Atomic # 7 Polarization: -63.97 SS G_CDS: -0.08 Total: -64.05 kcal Atomic # 8 Polarization: -11.01 SS G_CDS: -0.16 Total: -11.17 kcal Atomic # 14 Polarization: 22.23 SS G_CDS: -5.02 Total: 17.20 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -35.48 -10.01 -45.49 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086719768.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.359 kcal (2) G-P(sol) polarization free energy of solvation -35.480 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.879 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.010 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.490 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.131 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds