Wall clock time and date at job start Wed Apr 1 2020 02:52:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86800 * 119.99918 * 2 1 4 4 H 1.48501 * 109.47057 * 179.97438 * 3 2 1 5 5 H 1.48504 * 109.47102 * 299.99508 * 3 2 1 6 6 H 1.48500 * 109.47389 * 59.99856 * 3 2 1 7 7 C 1.38812 * 120.00227 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00285 * 179.97438 * 7 2 1 9 9 N 1.36945 * 119.99637 * 0.02562 * 7 2 1 10 10 C 1.46494 * 119.99612 * 179.97438 * 9 7 2 11 11 H 1.08999 * 110.67274 * 31.77236 * 10 9 7 12 12 C 1.54885 * 110.76220 * 268.32842 * 10 9 7 13 13 C 1.54263 * 104.19972 * 203.74728 * 12 10 9 14 14 C 1.53872 * 106.59900 * 23.61133 * 13 12 10 15 15 H 1.09008 * 110.03328 * 240.71741 * 14 13 12 16 16 C 1.52993 * 110.07347 * 119.30682 * 14 13 12 17 17 N 1.46507 * 109.47290 * 67.81104 * 16 14 13 18 18 C 1.34774 * 120.00199 * 180.02562 * 17 16 14 19 19 O 1.21591 * 120.00073 * 359.97438 * 18 17 16 20 20 C 1.47524 * 119.99834 * 180.02562 * 18 17 16 21 21 C 1.39528 * 120.24567 * 359.97438 * 20 18 17 22 22 C 1.38210 * 120.26741 * 179.97438 * 21 20 18 23 23 C 1.37974 * 120.70002 * 0.02562 * 22 21 20 24 24 C 1.39595 * 120.11902 * 359.97438 * 23 22 21 25 25 N 1.35981 * 133.39769 * 180.02562 * 24 23 22 26 26 C 1.30735 * 109.51749 * 179.97438 * 25 24 23 27 27 O 1.35280 * 125.05902 * 179.97438 * 26 25 24 28 28 N 1.36478 * 109.88838 * 359.97438 * 26 25 24 29 29 H 0.96998 * 126.32413 * 179.97438 * 28 26 25 30 30 C 1.37851 * 107.34788 * 359.78867 * 28 26 25 31 31 C 1.54264 * 106.59758 * 359.97438 * 14 13 12 32 32 H 0.97005 * 120.00046 * 0.02562 * 1 2 3 33 33 H 0.96995 * 120.00043 * 359.72565 * 9 7 2 34 34 H 1.08993 * 110.48700 * 322.43021 * 12 10 9 35 35 H 1.09004 * 110.48334 * 85.06845 * 12 10 9 36 36 H 1.09009 * 110.03267 * 264.32650 * 13 12 10 37 37 H 1.08998 * 110.07503 * 142.91787 * 13 12 10 38 38 H 1.09001 * 109.47395 * 187.80518 * 16 14 13 39 39 H 1.08996 * 109.47452 * 307.81141 * 16 14 13 40 40 H 0.97000 * 119.99541 * 359.97438 * 17 16 14 41 41 H 1.08004 * 119.87021 * 0.02562 * 21 20 18 42 42 H 1.07997 * 119.65011 * 180.02562 * 22 21 20 43 43 H 1.08006 * 119.93685 * 179.97438 * 23 22 21 44 44 H 0.96693 * 114.00313 * 90.02425 * 27 26 25 45 45 H 1.09005 * 110.48840 * 217.71210 * 31 14 13 46 46 H 1.08997 * 110.48668 * 95.06883 * 31 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8915 2.3964 -1.2126 6 1 1.8914 2.3965 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0001 9 7 1.3255 -2.3881 0.0005 10 6 2.0580 -3.6567 0.0005 11 1 3.0013 -3.5564 0.5375 12 6 2.2960 -4.1533 -1.4471 13 6 2.4851 -5.6771 -1.2982 14 6 1.7855 -6.0809 0.0114 15 1 2.5076 -6.5179 0.7012 16 6 0.6659 -7.0825 -0.2786 17 7 1.2480 -8.3467 -0.7362 18 6 0.4459 -9.3824 -1.0529 19 8 -0.7609 -9.2678 -0.9585 20 6 1.0322 -10.6555 -1.5131 21 6 2.4163 -10.7928 -1.6229 22 6 2.9661 -11.9856 -2.0535 23 6 2.1590 -13.0556 -2.3811 24 6 0.7713 -12.9431 -2.2797 25 7 -0.2558 -13.8000 -2.5243 26 6 -1.3915 -13.2046 -2.2695 27 8 -2.6130 -13.7696 -2.4063 28 7 -1.1615 -11.9281 -1.8449 29 1 -1.8342 -11.2765 -1.5925 30 6 0.2038 -11.7373 -1.8370 31 6 1.1962 -4.7884 0.6129 32 1 -0.4850 0.8401 -0.0004 33 1 0.3556 -2.3881 0.0042 34 1 1.4301 -3.9357 -2.0722 35 1 3.1934 -3.6965 -1.8644 36 1 3.5469 -5.9180 -1.2440 37 1 2.0275 -6.1950 -2.1410 38 1 0.0892 -7.2560 0.6299 39 1 0.0119 -6.6823 -1.0532 40 1 2.2108 -8.4380 -0.8119 41 1 3.0609 -9.9641 -1.3695 42 1 4.0388 -12.0810 -2.1344 43 1 2.6017 -13.9818 -2.7167 44 1 -2.9302 -14.2183 -1.6107 45 1 1.2906 -4.7953 1.6989 46 1 0.1525 -4.6729 0.3206 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001086719768.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:52:14 Heat of formation + Delta-G solvation = -29.471933 kcal Electronic energy + Delta-G solvation = -28653.550880 eV Core-core repulsion = 24542.623147 eV Total energy + Delta-G solvation = -4110.927733 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.164 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -43.31916 -40.95241 -39.49573 -38.94984 -37.44490 -36.36071 -35.02805 -34.27973 -32.66657 -31.48430 -30.19996 -29.88771 -28.73688 -26.18058 -25.01565 -24.41706 -23.42156 -23.13434 -21.80778 -21.10076 -20.64299 -19.92625 -19.21752 -18.85287 -18.66205 -17.61011 -17.25789 -16.97397 -16.77014 -16.56692 -16.10527 -15.68250 -15.56382 -15.33133 -15.22779 -14.94869 -14.86781 -14.26829 -14.06012 -13.62991 -13.55937 -13.31949 -13.09232 -12.98558 -12.68703 -12.66899 -12.65428 -12.37933 -12.08176 -11.96301 -11.88994 -11.77030 -11.64929 -11.52740 -11.45926 -11.22243 -10.95890 -10.90246 -10.20623 -9.47910 -9.27158 -8.97427 -7.94054 -5.21936 -0.54740 0.36660 1.16120 1.45899 1.47099 1.47678 1.57691 1.94167 2.06055 2.56708 2.70948 2.81077 3.38261 3.41488 3.64563 3.74877 3.80839 3.82944 3.92094 4.08747 4.16831 4.31543 4.34599 4.40646 4.49941 4.64550 4.66403 4.70385 4.80844 4.81790 4.85128 4.92763 5.11060 5.13515 5.14820 5.22596 5.31099 5.32018 5.37662 5.46940 5.51332 5.57627 5.65602 5.74315 5.81569 6.29074 6.47144 6.56680 6.59670 7.11746 7.34041 8.13408 8.34129 9.29920 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.025720 B = 0.001761 C = 0.001679 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1088.377892 B =15891.993356 C =16675.702971 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.973 5.973 2 C -0.082 4.082 3 Si 0.972 3.028 4 H -0.263 1.263 5 H -0.296 1.296 6 H -0.295 1.295 7 C -0.235 4.235 8 H 0.078 0.922 9 N -0.737 5.737 10 C 0.163 3.837 11 H 0.058 0.942 12 C -0.140 4.140 13 C -0.108 4.108 14 C -0.083 4.083 15 H 0.108 0.892 16 C 0.134 3.866 17 N -0.701 5.701 18 C 0.556 3.444 19 O -0.591 6.591 20 C -0.149 4.149 21 C -0.043 4.043 22 C -0.121 4.121 23 C -0.037 4.037 24 C 0.021 3.979 25 N -0.511 5.511 26 C 0.450 3.550 27 O -0.444 6.444 28 N -0.588 5.588 29 H 0.433 0.567 30 C 0.086 3.914 31 C -0.118 4.118 32 H 0.249 0.751 33 H 0.370 0.630 34 H 0.036 0.964 35 H 0.051 0.949 36 H 0.091 0.909 37 H 0.066 0.934 38 H 0.062 0.938 39 H 0.050 0.950 40 H 0.418 0.582 41 H 0.172 0.828 42 H 0.182 0.818 43 H 0.156 0.844 44 H 0.434 0.566 45 H 0.070 0.930 46 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.400 -31.372 -1.932 32.291 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.624 5.624 2 C -0.274 4.274 3 Si 0.801 3.199 4 H -0.187 1.187 5 H -0.224 1.224 6 H -0.222 1.222 7 C -0.367 4.367 8 H 0.096 0.904 9 N -0.376 5.376 10 C 0.055 3.945 11 H 0.076 0.924 12 C -0.181 4.181 13 C -0.146 4.146 14 C -0.102 4.102 15 H 0.126 0.874 16 C 0.010 3.990 17 N -0.353 5.353 18 C 0.345 3.655 19 O -0.473 6.473 20 C -0.156 4.156 21 C -0.063 4.063 22 C -0.141 4.141 23 C -0.056 4.056 24 C -0.097 4.097 25 N -0.243 5.243 26 C 0.145 3.855 27 O -0.250 6.250 28 N -0.212 5.212 29 H 0.275 0.725 30 C -0.027 4.027 31 C -0.157 4.157 32 H 0.058 0.942 33 H 0.202 0.798 34 H 0.055 0.945 35 H 0.070 0.930 36 H 0.110 0.890 37 H 0.085 0.915 38 H 0.081 0.919 39 H 0.069 0.931 40 H 0.257 0.743 41 H 0.189 0.811 42 H 0.199 0.801 43 H 0.174 0.826 44 H 0.296 0.704 45 H 0.088 0.912 46 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 6.749 -31.854 -2.703 32.673 hybrid contribution -1.206 2.227 0.692 2.625 sum 5.543 -29.627 -2.011 30.208 Atomic orbital electron populations 1.69833 1.06687 1.25829 1.60040 1.25584 0.96378 1.01200 1.04230 0.85086 0.78390 0.79924 0.76472 1.18729 1.22395 1.22225 1.19716 0.91507 0.85283 1.40203 0.90381 1.42645 1.05377 1.01258 1.88276 1.21487 0.94457 0.84457 0.94108 0.92412 1.22904 0.99937 0.96357 0.98879 1.22158 1.01658 0.94209 0.96579 1.21837 0.96622 0.93630 0.98151 0.87402 1.21381 0.95873 0.82634 0.99091 1.45708 1.11026 1.11948 1.66582 1.18455 0.86126 0.84191 0.76734 1.90697 1.16234 1.84180 1.56234 1.18911 0.94291 0.91444 1.10929 1.21658 0.91017 0.99615 0.93981 1.21339 1.02109 0.91029 0.99615 1.20913 0.88081 1.00950 0.95695 1.19268 0.95041 0.89630 1.05779 1.70707 0.96604 1.31005 1.26012 1.20521 0.87188 0.81452 0.96304 1.84797 1.25638 1.71910 1.42634 1.43583 1.07462 1.14563 1.55605 0.72517 1.18681 0.83154 0.97248 1.03573 1.22508 0.99098 0.93950 1.00156 0.94200 0.79815 0.94544 0.93032 0.89007 0.91513 0.91939 0.93140 0.74320 0.81074 0.80114 0.82642 0.70350 0.91159 0.93001 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -60.19 13.06 21.65 0.28 -59.90 16 2 C -0.08 -4.73 5.50 84.86 0.47 -4.27 16 3 Si 0.97 46.14 29.55 68.60 2.03 48.17 16 4 H -0.26 -11.58 7.11 99.48 0.71 -10.87 16 5 H -0.30 -14.18 7.11 99.48 0.71 -13.47 16 6 H -0.29 -14.03 7.11 99.48 0.71 -13.32 16 7 C -0.24 -12.94 9.96 84.03 0.84 -12.10 16 8 H 0.08 4.09 7.83 -2.91 -0.02 4.07 16 9 N -0.74 -36.81 5.23 -316.89 -1.66 -38.47 16 10 C 0.16 6.04 3.56 46.28 0.16 6.20 16 11 H 0.06 2.11 8.09 -2.39 -0.02 2.10 16 12 C -0.14 -4.52 6.51 31.67 0.21 -4.31 16 13 C -0.11 -2.24 6.19 31.32 0.19 -2.04 16 14 C -0.08 -1.66 2.96 -10.07 -0.03 -1.69 16 15 H 0.11 1.57 8.14 -2.38 -0.02 1.55 16 16 C 0.13 2.84 4.69 86.38 0.41 3.25 16 17 N -0.70 -11.53 5.30 -466.28 -2.47 -14.00 16 18 C 0.56 12.14 7.76 86.69 0.67 12.81 16 19 O -0.59 -17.45 15.27 -4.00 -0.06 -17.51 16 20 C -0.15 -2.67 5.88 -20.08 -0.12 -2.78 16 21 C -0.04 -0.40 9.53 22.57 0.22 -0.18 16 22 C -0.12 -0.87 9.99 22.20 0.22 -0.64 16 23 C -0.04 -0.46 10.09 22.53 0.23 -0.24 16 24 C 0.02 0.42 7.22 39.36 0.28 0.70 16 25 N -0.51 -11.67 11.32 -306.47 -3.47 -15.13 16 26 C 0.45 9.07 9.40 179.73 1.69 10.76 16 27 O -0.44 -6.25 13.63 -85.65 -1.17 -7.42 16 28 N -0.59 -12.40 6.03 -301.78 -1.82 -14.22 16 29 H 0.43 9.00 7.71 -92.71 -0.71 8.29 16 30 C 0.09 1.85 6.88 39.17 0.27 2.12 16 31 C -0.12 -3.47 5.98 31.66 0.19 -3.28 16 32 H 0.25 14.97 8.31 -92.70 -0.77 14.19 16 33 H 0.37 20.19 7.76 -92.71 -0.72 19.47 16 34 H 0.04 1.35 8.14 -2.39 -0.02 1.33 16 35 H 0.05 1.68 8.14 -2.38 -0.02 1.66 16 36 H 0.09 1.39 8.14 -2.38 -0.02 1.37 16 37 H 0.07 1.32 7.62 -2.39 -0.02 1.30 16 38 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 39 H 0.05 1.32 8.14 -2.39 -0.02 1.30 16 40 H 0.42 3.74 6.38 -92.71 -0.59 3.15 16 41 H 0.17 0.31 6.39 -2.91 -0.02 0.29 16 42 H 0.18 -0.13 8.06 -2.91 -0.02 -0.15 16 43 H 0.16 1.30 8.06 -2.91 -0.02 1.28 16 44 H 0.43 1.09 9.06 -74.06 -0.67 0.42 16 45 H 0.07 1.98 8.14 -2.38 -0.02 1.96 16 46 H 0.05 1.71 7.73 -2.39 -0.02 1.69 16 Total: -1.00 -81.11 382.78 -4.06 -85.17 By element: Atomic # 1 Polarization: 30.65 SS G_CDS: -1.63 Total: 29.02 kcal Atomic # 6 Polarization: -1.60 SS G_CDS: 5.89 Total: 4.29 kcal Atomic # 7 Polarization: -132.60 SS G_CDS: -9.13 Total: -141.73 kcal Atomic # 8 Polarization: -23.70 SS G_CDS: -1.23 Total: -24.93 kcal Atomic # 14 Polarization: 46.14 SS G_CDS: 2.03 Total: 48.17 kcal Total: -81.11 -4.06 -85.17 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086719768.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.699 kcal (2) G-P(sol) polarization free energy of solvation -81.108 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.409 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.063 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.171 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.472 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds