Wall clock time and date at job start Wed Apr 1 2020 02:27:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86796 * 120.00211 * 2 1 4 4 H 1.48504 * 109.47001 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.46998 * 299.99618 * 3 2 1 6 6 H 1.48507 * 109.47457 * 59.99715 * 3 2 1 7 7 C 1.38808 * 119.99889 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00381 * 197.37369 * 7 2 1 9 9 N 1.36941 * 120.00099 * 17.36818 * 7 2 1 10 10 C 1.46929 * 120.63502 * 207.69082 * 9 7 2 11 11 C 1.53182 * 108.77452 * 233.58994 * 10 9 7 12 12 C 1.53041 * 109.31478 * 305.36440 * 11 10 9 13 13 H 1.09004 * 109.44768 * 301.34946 * 12 11 10 14 14 N 1.46508 * 109.46256 * 181.39049 * 12 11 10 15 15 C 1.34775 * 120.00256 * 84.92633 * 14 12 11 16 16 O 1.21286 * 119.99545 * 0.02562 * 15 14 12 17 17 C 1.50697 * 120.00000 * 180.02562 * 15 14 12 18 18 C 1.50699 * 109.46917 * 180.02562 * 17 15 14 19 19 C 1.39686 * 119.13673 * 270.24867 * 18 17 15 20 20 C 1.35636 * 121.81395 * 180.26640 * 19 18 17 21 21 C 1.41150 * 119.59914 * 359.74778 * 20 19 18 22 22 N 1.32053 * 134.67986 * 180.02562 * 21 20 19 23 23 N 1.39960 * 108.96007 * 180.02562 * 22 21 20 24 24 H 0.97001 * 125.01943 * 179.97438 * 23 22 21 25 25 C 1.33984 * 109.95782 * 359.97438 * 23 22 21 26 26 C 1.38248 * 107.90500 * 0.02562 * 25 23 22 27 27 C 1.35652 * 119.13711 * 90.00247 * 18 17 15 28 28 C 1.53036 * 109.53814 * 61.36604 * 12 11 10 29 29 H 1.08998 * 109.49747 * 58.58923 * 28 12 11 30 30 O 1.42907 * 109.49712 * 178.68235 * 28 12 11 31 31 C 1.46934 * 120.62542 * 27.67460 * 9 7 2 32 32 H 0.97006 * 119.99869 * 0.02562 * 1 2 3 33 33 H 1.09001 * 109.58549 * 353.37759 * 10 9 7 34 34 H 1.09002 * 109.58337 * 113.80294 * 10 9 7 35 35 H 1.09008 * 109.49543 * 185.41314 * 11 10 9 36 36 H 1.09001 * 109.50425 * 65.31864 * 11 10 9 37 37 H 0.97000 * 119.99448 * 264.93874 * 14 12 11 38 38 H 1.08992 * 109.46957 * 60.00358 * 17 15 14 39 39 H 1.08996 * 109.47147 * 300.00310 * 17 15 14 40 40 H 1.08005 * 119.09156 * 359.97438 * 19 18 17 41 41 H 1.08009 * 120.20059 * 179.73322 * 20 19 18 42 42 H 1.07999 * 126.05028 * 179.97438 * 25 23 22 43 43 H 1.08000 * 120.23063 * 0.02562 * 27 18 17 44 44 H 0.96704 * 113.99465 * 179.97438 * 30 28 12 45 45 H 1.08994 * 109.58754 * 6.62173 * 31 9 7 46 46 H 1.09001 * 109.69767 * 246.26500 * 31 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3462 0.0006 5 1 1.8915 2.3963 -1.2126 6 1 1.8915 2.3965 1.2125 7 6 2.0102 -1.2021 0.0005 8 1 3.0532 -1.2234 0.2798 9 7 1.3723 -2.3612 -0.3530 10 6 1.8190 -3.6547 0.1819 11 6 2.0741 -4.6103 -0.9879 12 6 0.8185 -4.6902 -1.8592 13 1 -0.0206 -5.0365 -1.2557 14 7 1.0475 -5.6289 -2.9606 15 6 0.8471 -6.9485 -2.7740 16 8 0.4766 -7.3589 -1.6945 17 6 1.0833 -7.9140 -3.9067 18 6 0.7888 -9.3166 -3.4408 19 6 1.8163 -10.0751 -2.8750 20 6 1.6131 -11.3445 -2.4425 21 6 0.3309 -11.9234 -2.5576 22 7 -0.1899 -13.0960 -2.2451 23 7 -1.5439 -13.1012 -2.5995 24 1 -2.1496 -13.8482 -2.4729 25 6 -1.8798 -11.9219 -3.1395 26 6 -0.7520 -11.1223 -3.1495 27 6 -0.4683 -9.8077 -3.5773 28 6 0.5008 -3.3052 -2.4274 29 1 1.3495 -2.9478 -3.0105 30 8 -0.6539 -3.3869 -3.2655 31 6 0.2278 -2.3348 -1.2741 32 1 -0.4850 0.8401 -0.0004 33 1 2.7397 -3.5173 0.7489 34 1 1.0465 -4.0685 0.8300 35 1 2.3132 -5.6015 -0.6025 36 1 2.9080 -4.2406 -1.5846 37 1 1.3437 -5.3005 -3.8239 38 1 2.1223 -7.8486 -4.2292 39 1 0.4276 -7.6633 -4.7405 40 1 2.8007 -9.6404 -2.7836 41 1 2.4275 -11.9090 -2.0128 42 1 -2.8582 -11.6451 -3.5035 43 1 -1.2455 -9.1987 -4.0150 44 1 -0.9137 -2.5432 -3.6603 45 1 0.0987 -1.3266 -1.6676 46 1 -0.6758 -2.6396 -0.7462 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001090428918.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:27:11 Heat of formation + Delta-G solvation = 29.382496 kcal Electronic energy + Delta-G solvation = -29452.668822 eV Core-core repulsion = 25344.293209 eV Total energy + Delta-G solvation = -4108.375613 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.164 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.42709 -39.79027 -38.16660 -37.16539 -35.25965 -34.23993 -32.90791 -32.15395 -31.28237 -30.36601 -29.39401 -28.83975 -27.09847 -25.05231 -24.06424 -22.52347 -21.94513 -21.27396 -20.87382 -20.05313 -19.37384 -18.38961 -17.24531 -16.89502 -16.59653 -16.51299 -16.07957 -15.29898 -15.22575 -15.05276 -14.74567 -14.23839 -14.02226 -13.95393 -13.75542 -13.42806 -13.29129 -13.24944 -12.73645 -12.26772 -12.13870 -11.99856 -11.82986 -11.78437 -11.65769 -11.51896 -11.20816 -10.85093 -10.76145 -10.49181 -10.45156 -10.38230 -10.18731 -10.01125 -9.77694 -9.49518 -9.30905 -8.87548 -8.68845 -8.51691 -7.71467 -6.78125 -5.87306 -3.30524 0.46334 1.66257 2.27311 2.47318 2.92935 3.31439 3.40327 3.41314 3.42670 3.83622 4.07324 4.41059 4.42094 4.60779 4.67786 4.88862 4.98094 5.10824 5.19635 5.29582 5.30602 5.41568 5.43371 5.48977 5.52931 5.56514 5.63391 5.93224 6.01139 6.03062 6.11055 6.26861 6.29247 6.31886 6.47497 6.51206 6.57813 6.72225 6.74322 6.82656 6.90873 6.92928 7.12610 7.38407 7.46201 7.72227 7.83242 8.09951 8.35907 8.54675 9.11214 9.74167 10.30409 11.21108 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.027313 B = 0.002049 C = 0.002014 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1024.889492 B =13663.222085 C =13900.526762 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.001 3.999 3 Si 0.903 3.097 4 H -0.277 1.277 5 H -0.289 1.289 6 H -0.290 1.290 7 C -0.254 4.254 8 H 0.069 0.931 9 N -0.589 5.589 10 C 0.144 3.856 11 C -0.138 4.138 12 C 0.163 3.837 13 H 0.086 0.914 14 N -0.718 5.718 15 C 0.510 3.490 16 O -0.535 6.535 17 C -0.099 4.099 18 C -0.096 4.096 19 C -0.053 4.053 20 C -0.110 4.110 21 C 0.107 3.893 22 N -0.312 5.312 23 N -0.429 5.429 24 H 0.442 0.558 25 C 0.081 3.919 26 C -0.202 4.202 27 C -0.030 4.030 28 C 0.072 3.928 29 H 0.051 0.949 30 O -0.573 6.573 31 C 0.148 3.852 32 H 0.254 0.746 33 H 0.060 0.940 34 H 0.023 0.977 35 H 0.063 0.937 36 H 0.060 0.940 37 H 0.396 0.604 38 H 0.100 0.900 39 H 0.099 0.901 40 H 0.125 0.875 41 H 0.128 0.872 42 H 0.188 0.812 43 H 0.123 0.877 44 H 0.375 0.625 45 H 0.093 0.907 46 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.448 -20.337 -12.613 23.975 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.197 4.197 3 Si 0.733 3.267 4 H -0.202 1.202 5 H -0.215 1.215 6 H -0.217 1.217 7 C -0.383 4.383 8 H 0.087 0.913 9 N -0.313 5.313 10 C 0.018 3.982 11 C -0.179 4.179 12 C 0.059 3.941 13 H 0.104 0.896 14 N -0.368 5.368 15 C 0.295 3.705 16 O -0.411 6.411 17 C -0.139 4.139 18 C -0.098 4.098 19 C -0.076 4.076 20 C -0.131 4.131 21 C -0.046 4.046 22 N -0.141 5.141 23 N -0.130 5.130 24 H 0.286 0.714 25 C -0.076 4.076 26 C -0.212 4.212 27 C -0.050 4.050 28 C 0.011 3.989 29 H 0.069 0.931 30 O -0.378 6.378 31 C 0.021 3.979 32 H 0.064 0.936 33 H 0.079 0.921 34 H 0.041 0.959 35 H 0.082 0.918 36 H 0.079 0.921 37 H 0.229 0.771 38 H 0.118 0.882 39 H 0.118 0.882 40 H 0.143 0.857 41 H 0.146 0.854 42 H 0.204 0.796 43 H 0.141 0.859 44 H 0.222 0.778 45 H 0.111 0.889 46 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges -1.543 -22.312 -11.106 24.971 hybrid contribution -0.129 2.128 -0.786 2.272 sum -1.673 -20.184 -11.891 23.486 Atomic orbital electron populations 1.70044 1.05265 1.25553 1.53766 1.25080 0.95324 0.98563 1.00782 0.86211 0.79402 0.83773 0.77325 1.20178 1.21535 1.21653 1.19250 0.92867 0.84618 1.41568 0.91308 1.44027 1.35642 1.01809 1.49864 1.20946 0.98194 0.86321 0.92787 1.22401 0.96723 1.00167 0.98588 1.20946 0.98519 0.87037 0.87595 0.89589 1.46121 1.68889 1.06380 1.15433 1.20514 0.77519 0.82835 0.89592 1.90727 1.45709 1.77869 1.26810 1.20664 1.04299 0.91315 0.97620 1.18651 0.93835 0.94615 1.02668 1.20522 0.98814 0.93010 0.95234 1.19791 0.93257 0.95576 1.04455 1.20966 0.95426 0.91145 0.97109 1.77650 0.88541 1.20203 1.27682 1.46285 1.09627 1.12958 1.44085 0.71397 1.22689 0.99605 0.86665 0.98654 1.19578 0.93034 0.97238 1.11303 1.20024 0.95780 0.92062 0.97142 1.22970 0.86986 0.95589 0.93310 0.93086 1.86413 1.48375 1.36556 1.66407 1.21409 0.89794 0.98249 0.88472 0.93555 0.92150 0.95877 0.91813 0.92075 0.77072 0.88221 0.88245 0.85660 0.85433 0.79557 0.85943 0.77817 0.88866 0.95308 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.42 11.19 55.49 0.62 -24.80 16 2 C 0.00 0.03 4.91 -17.43 -0.09 -0.05 16 3 Si 0.90 21.00 29.59 -169.99 -5.03 15.97 16 4 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 5 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 6 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 7 C -0.25 -6.74 9.59 -15.06 -0.14 -6.88 16 8 H 0.07 1.80 7.89 -52.49 -0.41 1.38 16 9 N -0.59 -14.35 3.00 -172.32 -0.52 -14.87 16 10 C 0.14 3.05 6.52 -3.71 -0.02 3.02 16 11 C -0.14 -2.48 5.65 -26.62 -0.15 -2.63 16 12 C 0.16 2.89 2.12 -67.89 -0.14 2.75 16 13 H 0.09 1.80 7.58 -51.93 -0.39 1.40 16 14 N -0.72 -10.18 4.92 -53.76 -0.26 -10.44 16 15 C 0.51 7.35 7.79 -10.99 -0.09 7.26 16 16 O -0.53 -10.08 15.70 5.55 0.09 -10.00 16 17 C -0.10 -0.98 5.78 -29.04 -0.17 -1.15 16 18 C -0.10 -1.10 4.33 -105.01 -0.45 -1.55 16 19 C -0.05 -0.60 9.51 -39.97 -0.38 -0.98 16 20 C -0.11 -1.30 10.08 -39.41 -0.40 -1.70 16 21 C 0.11 1.39 7.49 -83.06 -0.62 0.77 16 22 N -0.31 -3.86 12.70 33.25 0.42 -3.44 16 23 N -0.43 -3.51 7.18 30.84 0.22 -3.29 16 24 H 0.44 1.80 8.96 -182.70 -1.64 0.16 16 25 C 0.08 0.64 12.08 -16.61 -0.20 0.44 16 26 C -0.20 -2.31 6.33 -105.19 -0.67 -2.98 16 27 C -0.03 -0.34 9.66 -39.41 -0.38 -0.72 16 28 C 0.07 1.32 3.14 -26.62 -0.08 1.24 16 29 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 30 O -0.57 -9.49 13.16 -35.23 -0.46 -9.95 16 31 C 0.15 3.39 4.94 -3.71 -0.02 3.37 16 32 H 0.25 6.91 8.31 -40.82 -0.34 6.58 16 33 H 0.06 1.23 7.93 -51.93 -0.41 0.82 16 34 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 35 H 0.06 1.12 8.14 -51.92 -0.42 0.69 16 36 H 0.06 1.06 8.14 -51.93 -0.42 0.63 16 37 H 0.40 4.55 8.60 -40.82 -0.35 4.20 16 38 H 0.10 0.74 8.07 -51.93 -0.42 0.32 16 39 H 0.10 0.78 8.06 -51.93 -0.42 0.36 16 40 H 0.13 1.16 8.06 -52.48 -0.42 0.73 16 41 H 0.13 1.28 8.06 -52.48 -0.42 0.86 16 42 H 0.19 0.66 8.06 -52.49 -0.42 0.24 16 43 H 0.12 1.15 8.06 -52.49 -0.42 0.73 16 44 H 0.38 4.96 9.08 45.56 0.41 5.38 16 45 H 0.09 2.33 6.04 -51.93 -0.31 2.02 16 46 H 0.03 0.73 8.14 -51.93 -0.42 0.30 16 LS Contribution 382.12 15.07 5.76 5.76 Total: -1.00 -36.04 382.12 -10.05 -46.10 By element: Atomic # 1 Polarization: 15.65 SS G_CDS: -6.89 Total: 8.76 kcal Atomic # 6 Polarization: 4.21 SS G_CDS: -4.01 Total: 0.21 kcal Atomic # 7 Polarization: -57.33 SS G_CDS: 0.48 Total: -56.85 kcal Atomic # 8 Polarization: -19.57 SS G_CDS: -0.38 Total: -19.95 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -5.03 Total: 15.97 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -36.04 -10.05 -46.10 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090428918.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.481 kcal (2) G-P(sol) polarization free energy of solvation -36.044 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.437 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.054 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.098 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.382 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds