Wall clock time and date at job start Wed Apr 1 2020 02:27:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86796 * 120.00211 * 2 1 4 4 H 1.48504 * 109.47001 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.46998 * 299.99618 * 3 2 1 6 6 H 1.48507 * 109.47457 * 59.99715 * 3 2 1 7 7 C 1.38808 * 119.99889 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00381 * 197.37369 * 7 2 1 9 9 N 1.36941 * 120.00099 * 17.36818 * 7 2 1 10 10 C 1.46929 * 120.63502 * 207.69082 * 9 7 2 11 11 C 1.53182 * 108.77452 * 233.58994 * 10 9 7 12 12 C 1.53041 * 109.31478 * 305.36440 * 11 10 9 13 13 H 1.09004 * 109.44768 * 301.34946 * 12 11 10 14 14 N 1.46508 * 109.46256 * 181.39049 * 12 11 10 15 15 C 1.34775 * 120.00256 * 84.92633 * 14 12 11 16 16 O 1.21286 * 119.99545 * 0.02562 * 15 14 12 17 17 C 1.50697 * 120.00000 * 180.02562 * 15 14 12 18 18 C 1.50699 * 109.46917 * 180.02562 * 17 15 14 19 19 C 1.39686 * 119.13673 * 270.24867 * 18 17 15 20 20 C 1.35636 * 121.81395 * 180.26640 * 19 18 17 21 21 C 1.41150 * 119.59914 * 359.74778 * 20 19 18 22 22 N 1.32053 * 134.67986 * 180.02562 * 21 20 19 23 23 N 1.39960 * 108.96007 * 180.02562 * 22 21 20 24 24 H 0.97001 * 125.01943 * 179.97438 * 23 22 21 25 25 C 1.33984 * 109.95782 * 359.97438 * 23 22 21 26 26 C 1.38248 * 107.90500 * 0.02562 * 25 23 22 27 27 C 1.35652 * 119.13711 * 90.00247 * 18 17 15 28 28 C 1.53036 * 109.53814 * 61.36604 * 12 11 10 29 29 H 1.08998 * 109.49747 * 58.58923 * 28 12 11 30 30 O 1.42907 * 109.49712 * 178.68235 * 28 12 11 31 31 C 1.46934 * 120.62542 * 27.67460 * 9 7 2 32 32 H 0.97006 * 119.99869 * 0.02562 * 1 2 3 33 33 H 1.09001 * 109.58549 * 353.37759 * 10 9 7 34 34 H 1.09002 * 109.58337 * 113.80294 * 10 9 7 35 35 H 1.09008 * 109.49543 * 185.41314 * 11 10 9 36 36 H 1.09001 * 109.50425 * 65.31864 * 11 10 9 37 37 H 0.97000 * 119.99448 * 264.93874 * 14 12 11 38 38 H 1.08992 * 109.46957 * 60.00358 * 17 15 14 39 39 H 1.08996 * 109.47147 * 300.00310 * 17 15 14 40 40 H 1.08005 * 119.09156 * 359.97438 * 19 18 17 41 41 H 1.08009 * 120.20059 * 179.73322 * 20 19 18 42 42 H 1.07999 * 126.05028 * 179.97438 * 25 23 22 43 43 H 1.08000 * 120.23063 * 0.02562 * 27 18 17 44 44 H 0.96704 * 113.99465 * 179.97438 * 30 28 12 45 45 H 1.08994 * 109.58754 * 6.62173 * 31 9 7 46 46 H 1.09001 * 109.69767 * 246.26500 * 31 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3462 0.0006 5 1 1.8915 2.3963 -1.2126 6 1 1.8915 2.3965 1.2125 7 6 2.0102 -1.2021 0.0005 8 1 3.0532 -1.2234 0.2798 9 7 1.3723 -2.3612 -0.3530 10 6 1.8190 -3.6547 0.1819 11 6 2.0741 -4.6103 -0.9879 12 6 0.8185 -4.6902 -1.8592 13 1 -0.0206 -5.0365 -1.2557 14 7 1.0475 -5.6289 -2.9606 15 6 0.8471 -6.9485 -2.7740 16 8 0.4766 -7.3589 -1.6945 17 6 1.0833 -7.9140 -3.9067 18 6 0.7888 -9.3166 -3.4408 19 6 1.8163 -10.0751 -2.8750 20 6 1.6131 -11.3445 -2.4425 21 6 0.3309 -11.9234 -2.5576 22 7 -0.1899 -13.0960 -2.2451 23 7 -1.5439 -13.1012 -2.5995 24 1 -2.1496 -13.8482 -2.4729 25 6 -1.8798 -11.9219 -3.1395 26 6 -0.7520 -11.1223 -3.1495 27 6 -0.4683 -9.8077 -3.5773 28 6 0.5008 -3.3052 -2.4274 29 1 1.3495 -2.9478 -3.0105 30 8 -0.6539 -3.3869 -3.2655 31 6 0.2278 -2.3348 -1.2741 32 1 -0.4850 0.8401 -0.0004 33 1 2.7397 -3.5173 0.7489 34 1 1.0465 -4.0685 0.8300 35 1 2.3132 -5.6015 -0.6025 36 1 2.9080 -4.2406 -1.5846 37 1 1.3437 -5.3005 -3.8239 38 1 2.1223 -7.8486 -4.2292 39 1 0.4276 -7.6633 -4.7405 40 1 2.8007 -9.6404 -2.7836 41 1 2.4275 -11.9090 -2.0128 42 1 -2.8582 -11.6451 -3.5035 43 1 -1.2455 -9.1987 -4.0150 44 1 -0.9137 -2.5432 -3.6603 45 1 0.0987 -1.3266 -1.6676 46 1 -0.6758 -2.6396 -0.7462 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001090428918.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:27:10 Heat of formation + Delta-G solvation = 1.477376 kcal Electronic energy + Delta-G solvation = -29453.878879 eV Core-core repulsion = 25344.293209 eV Total energy + Delta-G solvation = -4109.585670 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.164 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.16921 -41.01677 -39.51310 -38.12828 -36.85530 -35.68802 -33.99977 -33.59415 -32.15159 -31.40316 -30.82357 -30.42135 -28.07549 -26.73167 -24.94161 -24.10345 -23.46804 -22.30507 -21.62574 -21.30580 -20.85832 -19.08129 -18.93488 -18.06998 -17.80656 -17.68810 -17.33106 -16.70697 -16.23884 -16.05044 -15.81575 -15.58729 -15.43512 -15.28402 -14.94530 -14.78449 -14.60642 -14.39816 -13.94645 -13.81868 -13.53915 -13.33626 -13.07140 -12.82132 -12.77974 -12.67029 -12.57490 -12.48931 -12.29710 -12.04228 -11.97084 -11.85729 -11.34634 -11.27229 -11.24701 -10.95768 -10.68064 -10.59951 -9.92073 -9.65762 -8.75851 -8.50228 -7.90037 -5.37117 -0.26689 0.84176 1.48063 1.50821 1.50939 1.61343 1.83596 1.89711 2.31920 2.50374 2.95436 3.15401 3.28727 3.33223 3.65949 3.79323 3.87435 3.96111 4.10475 4.20088 4.26179 4.28283 4.34439 4.45673 4.49186 4.50982 4.60946 4.68016 4.76203 4.77764 4.84851 4.95179 5.00162 5.06861 5.18178 5.26150 5.35825 5.49339 5.52850 5.57889 5.61913 5.65034 5.77755 5.99080 6.30228 6.34115 6.62191 6.75535 6.86147 7.11018 7.46367 7.78412 8.31440 9.16725 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.027313 B = 0.002049 C = 0.002014 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1024.889492 B =13663.222085 C =13900.526762 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.050 4.050 3 Si 0.970 3.030 4 H -0.265 1.265 5 H -0.286 1.286 6 H -0.296 1.296 7 C -0.263 4.263 8 H 0.073 0.927 9 N -0.605 5.605 10 C 0.140 3.860 11 C -0.121 4.121 12 C 0.171 3.829 13 H 0.050 0.950 14 N -0.707 5.707 15 C 0.509 3.491 16 O -0.584 6.584 17 C -0.085 4.085 18 C -0.120 4.120 19 C -0.055 4.055 20 C -0.136 4.136 21 C 0.082 3.918 22 N -0.355 5.355 23 N -0.417 5.417 24 H 0.459 0.541 25 C 0.110 3.890 26 C -0.239 4.239 27 C -0.030 4.030 28 C 0.094 3.906 29 H 0.068 0.932 30 O -0.572 6.572 31 C 0.156 3.844 32 H 0.251 0.749 33 H 0.065 0.935 34 H 0.005 0.995 35 H 0.069 0.931 36 H 0.076 0.924 37 H 0.414 0.586 38 H 0.130 0.870 39 H 0.128 0.872 40 H 0.141 0.859 41 H 0.132 0.868 42 H 0.236 0.764 43 H 0.141 0.859 44 H 0.391 0.609 45 H 0.070 0.930 46 H -0.008 1.008 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.118 -20.669 -15.035 25.583 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.245 4.245 3 Si 0.798 3.202 4 H -0.189 1.189 5 H -0.212 1.212 6 H -0.224 1.224 7 C -0.393 4.393 8 H 0.090 0.910 9 N -0.329 5.329 10 C 0.014 3.986 11 C -0.162 4.162 12 C 0.066 3.934 13 H 0.068 0.932 14 N -0.358 5.358 15 C 0.297 3.703 16 O -0.464 6.464 17 C -0.124 4.124 18 C -0.122 4.122 19 C -0.078 4.078 20 C -0.157 4.157 21 C -0.071 4.071 22 N -0.185 5.185 23 N -0.118 5.118 24 H 0.306 0.694 25 C -0.048 4.048 26 C -0.249 4.249 27 C -0.050 4.050 28 C 0.033 3.967 29 H 0.086 0.914 30 O -0.379 6.379 31 C 0.029 3.971 32 H 0.061 0.939 33 H 0.084 0.916 34 H 0.023 0.977 35 H 0.087 0.913 36 H 0.095 0.905 37 H 0.250 0.750 38 H 0.148 0.852 39 H 0.146 0.854 40 H 0.159 0.841 41 H 0.150 0.850 42 H 0.253 0.747 43 H 0.158 0.842 44 H 0.241 0.759 45 H 0.089 0.911 46 H 0.010 0.990 Dipole moment (debyes) X Y Z Total from point charges -1.193 -22.680 -13.571 26.457 hybrid contribution -0.385 2.150 0.017 2.185 sum -1.578 -20.529 -13.554 24.651 Atomic orbital electron populations 1.70202 1.06735 1.26004 1.55212 1.25845 0.96045 1.01650 1.01000 0.85171 0.78690 0.79565 0.76766 1.18913 1.21246 1.22376 1.19583 0.93187 0.85559 1.40962 0.90971 1.44279 1.35693 1.02353 1.50611 1.21047 0.97644 0.85802 0.94080 1.22180 0.97236 0.99346 0.97396 1.20549 0.97104 0.87415 0.88347 0.93211 1.45903 1.68737 1.05996 1.15164 1.21344 0.75941 0.82966 0.90076 1.90717 1.47848 1.78573 1.29215 1.20665 1.06877 0.88788 0.96067 1.18879 0.94115 0.95472 1.03752 1.20778 0.99705 0.92772 0.94502 1.19999 0.93594 0.96347 1.05771 1.21290 0.96361 0.91781 0.97640 1.77560 0.90561 1.20664 1.29706 1.46345 1.08761 1.13816 1.42913 0.69351 1.23450 1.00433 0.85308 0.95641 1.19995 0.93956 0.97990 1.12916 1.20344 0.96237 0.92166 0.96285 1.22525 0.87973 0.94557 0.91693 0.91434 1.86390 1.47793 1.37883 1.65792 1.21235 0.88189 0.98233 0.89482 0.93936 0.91630 0.97734 0.91273 0.90522 0.74980 0.85159 0.85412 0.84136 0.85036 0.74736 0.84173 0.75946 0.91123 0.99018 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -53.94 11.19 21.65 0.24 -53.70 16 2 C -0.05 -2.70 4.91 84.86 0.42 -2.29 16 3 Si 0.97 43.23 29.59 68.60 2.03 45.26 16 4 H -0.26 -11.17 7.11 99.48 0.71 -10.46 16 5 H -0.29 -12.52 7.11 99.48 0.71 -11.82 16 6 H -0.30 -13.46 7.11 99.48 0.71 -12.75 16 7 C -0.26 -14.01 9.59 84.03 0.81 -13.20 16 8 H 0.07 3.73 7.89 -2.91 -0.02 3.70 16 9 N -0.60 -29.83 3.00 -699.11 -2.09 -31.92 16 10 C 0.14 5.99 6.52 86.36 0.56 6.55 16 11 C -0.12 -4.23 5.65 30.67 0.17 -4.05 16 12 C 0.17 5.94 2.12 45.02 0.10 6.04 16 13 H 0.05 2.12 7.58 -2.39 -0.02 2.10 16 14 N -0.71 -18.32 4.92 -442.39 -2.18 -20.50 16 15 C 0.51 13.63 7.79 87.66 0.68 14.31 16 16 O -0.58 -21.78 15.70 -3.05 -0.05 -21.82 16 17 C -0.08 -1.41 5.78 29.10 0.17 -1.24 16 18 C -0.12 -2.56 4.33 -20.11 -0.09 -2.64 16 19 C -0.06 -1.21 9.51 22.02 0.21 -1.00 16 20 C -0.14 -3.31 10.08 22.38 0.23 -3.09 16 21 C 0.08 2.14 7.49 42.16 0.32 2.45 16 22 N -0.36 -8.81 12.70 -48.71 -0.62 -9.43 16 23 N -0.42 -6.15 7.18 -56.34 -0.40 -6.56 16 24 H 0.46 2.86 8.96 -213.41 -1.91 0.95 16 25 C 0.11 1.47 12.08 84.37 1.02 2.49 16 26 C -0.24 -5.17 6.33 -20.23 -0.13 -5.30 16 27 C -0.03 -0.63 9.66 22.38 0.22 -0.41 16 28 C 0.09 3.32 3.14 30.67 0.10 3.41 16 29 H 0.07 2.23 8.14 -2.39 -0.02 2.22 16 30 O -0.57 -18.03 13.16 -148.98 -1.96 -19.99 16 31 C 0.16 7.28 4.94 86.36 0.43 7.71 16 32 H 0.25 13.98 8.31 -92.70 -0.77 13.21 16 33 H 0.07 2.67 7.93 -2.39 -0.02 2.66 16 34 H 0.00 0.21 8.14 -2.39 -0.02 0.19 16 35 H 0.07 2.35 8.14 -2.38 -0.02 2.33 16 36 H 0.08 2.46 8.14 -2.39 -0.02 2.44 16 37 H 0.41 7.95 8.60 -92.71 -0.80 7.16 16 38 H 0.13 1.39 8.07 -2.39 -0.02 1.37 16 39 H 0.13 1.43 8.06 -2.39 -0.02 1.41 16 40 H 0.14 2.44 8.06 -2.91 -0.02 2.42 16 41 H 0.13 2.83 8.06 -2.91 -0.02 2.81 16 42 H 0.24 0.58 8.06 -2.91 -0.02 0.56 16 43 H 0.14 2.26 8.06 -2.91 -0.02 2.23 16 44 H 0.39 9.68 9.08 -74.05 -0.67 9.01 16 45 H 0.07 3.61 6.04 -2.39 -0.01 3.60 16 46 H -0.01 -0.44 8.14 -2.39 -0.02 -0.46 16 Total: -1.00 -81.89 382.12 -2.17 -84.05 By element: Atomic # 1 Polarization: 27.22 SS G_CDS: -2.34 Total: 24.88 kcal Atomic # 6 Polarization: 4.54 SS G_CDS: 5.20 Total: 9.74 kcal Atomic # 7 Polarization: -117.07 SS G_CDS: -5.05 Total: -122.12 kcal Atomic # 8 Polarization: -39.81 SS G_CDS: -2.01 Total: -41.82 kcal Atomic # 14 Polarization: 43.23 SS G_CDS: 2.03 Total: 45.26 kcal Total: -81.89 -2.17 -84.05 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090428918.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.532 kcal (2) G-P(sol) polarization free energy of solvation -81.885 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.647 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.169 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.055 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.477 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds