Wall clock time and date at job start Wed Apr 1 2020 02:29:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86795 * 119.99825 * 2 1 4 4 H 1.48498 * 109.47385 * 270.00049 * 3 2 1 5 5 H 1.48502 * 109.47151 * 30.00326 * 3 2 1 6 6 H 1.48503 * 109.47177 * 149.99882 * 3 2 1 7 7 C 1.38812 * 120.00285 * 180.02562 * 2 1 3 8 8 H 1.07992 * 120.00349 * 179.97438 * 7 2 1 9 9 N 1.36940 * 119.99753 * 359.97438 * 7 2 1 10 10 C 1.46495 * 119.99908 * 174.59777 * 9 7 2 11 11 C 1.52998 * 109.47447 * 62.82493 * 10 9 7 12 12 N 1.46510 * 109.46672 * 54.57593 * 11 10 9 13 13 C 1.34777 * 119.99824 * 176.37916 * 12 11 10 14 14 O 1.21564 * 119.99704 * 0.02562 * 13 12 11 15 15 C 1.47792 * 119.99895 * 180.02562 * 13 12 11 16 16 C 1.41159 * 118.95300 * 359.97438 * 15 13 12 17 17 C 1.35390 * 121.76584 * 179.97438 * 16 15 13 18 18 C 1.45287 * 119.09968 * 0.02562 * 17 16 15 19 19 N 1.30885 * 138.54150 * 180.02562 * 18 17 16 20 20 O 1.21485 * 109.07496 * 179.97438 * 19 18 17 21 21 N 1.21477 * 116.30127 * 359.97438 * 20 19 18 22 22 C 1.31069 * 109.08055 * 359.97438 * 21 20 19 23 23 C 1.37768 * 118.95004 * 179.73484 * 15 13 12 24 24 C 1.53000 * 109.47069 * 302.82746 * 10 9 7 25 25 C 1.53003 * 109.47328 * 300.00478 * 24 10 9 26 26 C 1.53003 * 109.46788 * 299.99710 * 25 24 10 27 27 C 1.53001 * 109.47253 * 59.99831 * 26 25 24 28 28 C 1.53001 * 109.47326 * 300.00210 * 27 26 25 29 29 H 0.97004 * 120.00348 * 359.97438 * 1 2 3 30 30 H 0.97001 * 120.00183 * 354.31845 * 9 7 2 31 31 H 1.09004 * 109.47011 * 174.57032 * 11 10 9 32 32 H 1.08990 * 109.47492 * 294.57448 * 11 10 9 33 33 H 0.96991 * 119.99808 * 356.38227 * 12 11 10 34 34 H 1.08004 * 119.10998 * 359.96014 * 16 15 13 35 35 H 1.08006 * 120.44997 * 180.02562 * 17 16 15 36 36 H 1.07995 * 120.14880 * 0.02562 * 23 15 13 37 37 H 1.09007 * 109.47426 * 60.00229 * 24 10 9 38 38 H 1.09002 * 109.47517 * 179.97438 * 24 10 9 39 39 H 1.09002 * 109.47056 * 179.97438 * 25 24 10 40 40 H 1.08996 * 109.47343 * 59.99549 * 25 24 10 41 41 H 1.09004 * 109.47348 * 300.00110 * 26 25 24 42 42 H 1.09000 * 109.46885 * 180.02562 * 26 25 24 43 43 H 1.08994 * 109.47100 * 179.97438 * 27 26 25 44 44 H 1.09004 * 109.46715 * 59.99893 * 27 26 25 45 45 H 1.09003 * 109.46738 * 300.00463 * 28 27 26 46 46 H 1.08995 * 109.47429 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4976 2.0465 -1.4000 5 1 1.4475 2.6526 0.7001 6 1 3.5477 1.4402 0.7001 7 6 2.0103 -1.2021 -0.0005 8 1 3.0902 -1.2021 -0.0010 9 7 1.3256 -2.3881 -0.0005 10 6 2.0532 -3.6539 -0.1205 11 6 2.9809 -3.8252 1.0840 12 7 2.2036 -3.7039 2.3200 13 6 2.8013 -3.8931 3.5131 14 8 3.9853 -4.1640 3.5636 15 6 2.0171 -3.7713 4.7599 16 6 0.6439 -3.4554 4.6755 17 6 -0.1280 -3.3305 5.7807 18 6 0.4736 -3.5264 7.0886 19 7 0.1145 -3.5025 8.3470 20 8 1.0801 -3.7533 9.0402 21 7 2.1233 -3.9637 8.4543 22 6 1.9186 -3.8592 7.1640 23 6 2.6486 -3.9747 5.9674 24 6 2.8829 -3.6453 -1.4060 25 6 1.9553 -3.4740 -2.6107 26 6 0.9578 -4.6333 -2.6552 27 6 0.1281 -4.6420 -1.3697 28 6 1.0557 -4.8132 -0.1651 29 1 -0.4851 0.8401 0.0004 30 1 0.3592 -2.3902 0.0830 31 1 3.4496 -4.8085 1.0446 32 1 3.7510 -3.0543 1.0620 33 1 1.2590 -3.4874 2.2796 34 1 0.1973 -3.3092 3.7030 35 1 -1.1768 -3.0885 5.6913 36 1 3.7003 -4.2185 5.9952 37 1 3.5935 -2.8194 -1.3744 38 1 3.4246 -4.5870 -1.4952 39 1 2.5464 -3.4674 -3.5264 40 1 1.4139 -2.5322 -2.5213 41 1 1.4992 -5.5752 -2.7445 42 1 0.2973 -4.5115 -3.5137 43 1 -0.5827 -5.4676 -1.4017 44 1 -0.4132 -3.7001 -1.2804 45 1 1.5972 -5.7550 -0.2545 46 1 0.4647 -4.8189 0.7507 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001115703531.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:29:41 Heat of formation + Delta-G solvation = 105.781860 kcal Electronic energy + Delta-G solvation = -30466.746322 eV Core-core repulsion = 26361.683634 eV Total energy + Delta-G solvation = -4105.062688 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.164 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -46.84799 -40.15795 -38.87980 -37.74934 -35.00662 -34.65604 -33.64869 -33.21132 -31.27230 -31.21769 -30.31192 -28.74641 -26.94494 -25.14273 -24.79088 -23.87040 -22.25901 -21.47805 -21.33411 -20.47072 -19.12898 -19.03727 -18.37341 -18.13306 -17.53084 -17.10949 -15.80271 -15.25728 -15.04062 -14.78269 -14.59802 -14.45045 -14.17926 -14.07320 -13.66719 -13.59379 -13.37256 -13.06747 -12.87621 -12.81983 -12.18121 -12.02060 -12.01802 -11.95989 -11.77562 -11.64529 -11.44216 -11.20616 -10.93733 -10.84674 -10.61288 -10.23948 -10.11137 -10.09252 -9.98672 -9.80432 -9.67412 -9.39899 -8.96974 -8.86542 -8.60425 -7.10660 -5.89198 -3.18514 -0.32686 0.73210 1.63229 2.57290 2.78337 3.10293 3.36114 3.42968 3.43600 3.45007 3.49891 3.54034 4.36583 4.48193 4.50413 4.67235 4.84439 4.97101 5.11376 5.17895 5.21013 5.30881 5.48900 5.51651 5.56266 5.64297 5.74395 5.77977 5.86564 5.90420 5.96295 6.04367 6.06059 6.09149 6.11872 6.22366 6.37884 6.40611 6.51396 6.66185 6.72484 6.74606 6.86254 6.94929 7.14157 7.63904 7.78145 8.21236 8.28709 8.38100 9.41837 9.93185 10.29804 11.32455 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.011138 B = 0.003311 C = 0.002916 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2513.359300 B = 8454.596632 C = 9599.763045 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C -0.005 4.005 3 Si 0.898 3.102 4 H -0.290 1.290 5 H -0.293 1.293 6 H -0.283 1.283 7 C -0.233 4.233 8 H 0.069 0.931 9 N -0.710 5.710 10 C 0.190 3.810 11 C 0.113 3.887 12 N -0.687 5.687 13 C 0.550 3.450 14 O -0.544 6.544 15 C -0.087 4.087 16 C -0.065 4.065 17 C -0.062 4.062 18 C 0.025 3.975 19 N -0.345 5.345 20 O 0.374 5.626 21 N -0.337 5.337 22 C 0.014 3.986 23 C -0.007 4.007 24 C -0.114 4.114 25 C -0.110 4.110 26 C -0.113 4.113 27 C -0.115 4.115 28 C -0.114 4.114 29 H 0.255 0.745 30 H 0.384 0.616 31 H 0.058 0.942 32 H 0.068 0.932 33 H 0.404 0.596 34 H 0.153 0.847 35 H 0.155 0.845 36 H 0.160 0.840 37 H 0.064 0.936 38 H 0.045 0.955 39 H 0.044 0.956 40 H 0.083 0.917 41 H 0.049 0.951 42 H 0.051 0.949 43 H 0.049 0.951 44 H 0.075 0.925 45 H 0.060 0.940 46 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.168 -10.925 5.915 12.478 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.202 4.202 3 Si 0.729 3.271 4 H -0.218 1.218 5 H -0.219 1.219 6 H -0.209 1.209 7 C -0.364 4.364 8 H 0.087 0.913 9 N -0.352 5.352 10 C 0.098 3.902 11 C -0.013 4.013 12 N -0.337 5.337 13 C 0.335 3.665 14 O -0.423 6.423 15 C -0.094 4.094 16 C -0.087 4.087 17 C -0.082 4.082 18 C -0.130 4.130 19 N -0.067 5.067 20 O 0.136 5.864 21 N -0.057 5.057 22 C -0.139 4.139 23 C -0.028 4.028 24 C -0.154 4.154 25 C -0.147 4.147 26 C -0.150 4.150 27 C -0.153 4.153 28 C -0.152 4.152 29 H 0.065 0.935 30 H 0.219 0.781 31 H 0.076 0.924 32 H 0.086 0.914 33 H 0.241 0.759 34 H 0.170 0.830 35 H 0.173 0.827 36 H 0.177 0.823 37 H 0.083 0.917 38 H 0.063 0.937 39 H 0.062 0.938 40 H 0.102 0.898 41 H 0.068 0.932 42 H 0.070 0.930 43 H 0.067 0.933 44 H 0.093 0.907 45 H 0.078 0.922 46 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -0.288 -10.998 7.061 13.072 hybrid contribution -0.191 1.316 -0.870 1.589 sum -0.479 -9.681 6.191 11.502 Atomic orbital electron populations 1.69630 1.04944 1.25669 1.57544 1.24647 0.95363 0.97376 1.02768 0.86333 0.78871 0.84312 0.77541 1.21756 1.21932 1.20851 1.19065 0.90978 0.83715 1.42636 0.91267 1.42461 1.06086 0.99410 1.87286 1.19828 0.91286 0.87596 0.91471 1.21989 0.95077 1.00417 0.83811 1.45720 1.14252 1.68583 1.05183 1.17952 0.86854 0.78291 0.83414 1.90772 1.15134 1.49199 1.87217 1.19983 0.94145 1.01381 0.93911 1.21136 0.92216 0.95635 0.99714 1.20858 1.00775 1.01045 0.85510 1.24171 0.92686 1.02634 0.93494 1.75184 1.10603 1.17562 1.03389 1.85400 1.08761 1.57577 1.34664 1.75261 1.07025 1.16915 1.06519 1.22692 0.94281 1.04645 0.92232 1.20205 1.00638 0.95628 0.86369 1.21786 0.98070 1.00186 0.95390 1.21373 0.97183 0.99753 0.96405 1.21472 0.97912 0.98435 0.97204 1.21473 0.97496 1.01894 0.94446 1.21700 0.97652 0.97788 0.98059 0.93549 0.78050 0.92409 0.91358 0.75866 0.82959 0.82714 0.82288 0.91698 0.93669 0.93751 0.89797 0.93229 0.93017 0.93255 0.90684 0.92165 0.92534 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -24.80 13.07 55.49 0.73 -24.08 16 2 C -0.01 -0.13 5.50 -17.43 -0.10 -0.23 16 3 Si 0.90 21.04 29.55 -169.99 -5.02 16.02 16 4 H -0.29 -6.88 7.11 56.52 0.40 -6.47 16 5 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 6 H -0.28 -6.63 7.11 56.52 0.40 -6.22 16 7 C -0.23 -5.47 8.70 -15.06 -0.13 -5.60 16 8 H 0.07 1.66 6.77 -52.49 -0.36 1.31 16 9 N -0.71 -14.02 3.39 -47.24 -0.16 -14.18 16 10 C 0.19 3.04 0.41 -131.82 -0.05 2.99 16 11 C 0.11 1.83 4.37 -4.04 -0.02 1.81 16 12 N -0.69 -10.39 5.03 -61.26 -0.31 -10.70 16 13 C 0.55 8.57 7.75 -12.35 -0.10 8.47 16 14 O -0.54 -10.07 16.21 5.31 0.09 -9.98 16 15 C -0.09 -1.13 5.86 -105.05 -0.62 -1.75 16 16 C -0.07 -0.72 9.39 -39.49 -0.37 -1.09 16 17 C -0.06 -0.64 10.27 -37.80 -0.39 -1.03 16 18 C 0.02 0.30 7.94 -81.25 -0.65 -0.34 16 19 N -0.34 -4.28 12.28 32.76 0.40 -3.87 16 20 O 0.37 4.45 11.67 26.94 0.31 4.77 16 21 N -0.34 -4.31 12.29 31.88 0.39 -3.92 16 22 C 0.01 0.18 7.75 -83.07 -0.64 -0.46 16 23 C -0.01 -0.09 9.60 -38.85 -0.37 -0.46 16 24 C -0.11 -1.82 4.52 -26.73 -0.12 -1.94 16 25 C -0.11 -1.73 5.77 -26.73 -0.15 -1.88 16 26 C -0.11 -1.53 5.92 -26.73 -0.16 -1.69 16 27 C -0.12 -1.58 5.75 -26.73 -0.15 -1.74 16 28 C -0.11 -1.54 4.65 -26.73 -0.12 -1.66 16 29 H 0.25 6.79 8.31 -40.82 -0.34 6.45 16 30 H 0.38 8.14 6.64 -40.82 -0.27 7.87 16 31 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 32 H 0.07 1.28 7.51 -51.93 -0.39 0.89 16 33 H 0.40 5.70 5.28 -40.82 -0.22 5.48 16 34 H 0.15 1.49 6.23 -52.48 -0.33 1.16 16 35 H 0.16 1.24 8.06 -52.48 -0.42 0.81 16 36 H 0.16 2.00 7.52 -52.49 -0.39 1.61 16 37 H 0.06 1.15 7.23 -51.93 -0.38 0.77 16 38 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 39 H 0.04 0.65 8.14 -51.93 -0.42 0.22 16 40 H 0.08 1.62 7.60 -51.93 -0.39 1.22 16 41 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 42 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 43 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 44 H 0.07 1.21 6.93 -51.93 -0.36 0.85 16 45 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 46 H 0.06 0.72 7.29 -51.93 -0.38 0.34 16 LS Contribution 371.33 15.07 5.60 5.60 Total: -1.00 -27.60 371.33 -8.10 -35.70 By element: Atomic # 1 Polarization: 17.23 SS G_CDS: -5.98 Total: 11.25 kcal Atomic # 6 Polarization: -2.47 SS G_CDS: -4.14 Total: -6.61 kcal Atomic # 7 Polarization: -57.79 SS G_CDS: 1.05 Total: -56.74 kcal Atomic # 8 Polarization: -5.62 SS G_CDS: 0.40 Total: -5.22 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -5.02 Total: 16.02 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -27.60 -8.10 -35.70 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001115703531.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 141.484 kcal (2) G-P(sol) polarization free energy of solvation -27.605 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 113.880 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.098 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.703 kcal (6) G-S(sol) free energy of system = (1) + (5) 105.782 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds