Wall clock time and date at job start Wed Apr 1 2020 03:14:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86799 * 119.99503 * 2 1 4 4 H 1.48498 * 109.46911 * 269.99472 * 3 2 1 5 5 H 1.48500 * 109.47673 * 29.99404 * 3 2 1 6 6 H 1.48498 * 109.47441 * 149.99578 * 3 2 1 7 7 C 1.38802 * 120.00245 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00441 * 0.02562 * 7 2 1 9 9 N 1.36941 * 119.99794 * 180.28032 * 7 2 1 10 10 C 1.46504 * 119.99751 * 173.52403 * 9 7 2 11 11 C 1.52996 * 109.47702 * 63.15769 * 10 9 7 12 12 N 1.46509 * 109.46897 * 54.66056 * 11 10 9 13 13 C 1.34777 * 119.99800 * 176.25423 * 12 11 10 14 14 O 1.21284 * 120.00062 * 0.02562 * 13 12 11 15 15 C 1.50700 * 119.99631 * 180.02562 * 13 12 11 16 16 H 1.09000 * 110.28302 * 337.11274 * 15 13 12 17 17 C 1.54167 * 110.31354 * 215.00089 * 15 13 12 18 18 C 1.53885 * 108.70223 * 213.18769 * 17 15 13 19 19 C 1.55048 * 106.62366 * 47.18205 * 18 17 15 20 20 S 1.82914 * 110.31944 * 99.33872 * 15 13 12 21 21 O 1.42098 * 109.35585 * 234.41940 * 20 15 13 22 22 O 1.42100 * 109.35643 * 7.62872 * 20 15 13 23 23 C 1.53004 * 109.46804 * 303.15372 * 10 9 7 24 24 C 1.52989 * 109.47562 * 300.00226 * 23 10 9 25 25 C 1.53001 * 109.47305 * 300.00423 * 24 23 10 26 26 C 1.52996 * 109.47327 * 59.99485 * 25 24 23 27 27 C 1.52989 * 109.47349 * 300.00488 * 26 25 24 28 28 H 0.96996 * 120.00356 * 0.02562 * 1 2 3 29 29 H 0.96994 * 120.00420 * 353.51961 * 9 7 2 30 30 H 1.08994 * 109.47541 * 174.66510 * 11 10 9 31 31 H 1.09003 * 109.46970 * 294.67259 * 11 10 9 32 32 H 0.97002 * 119.99923 * 356.26537 * 12 11 10 33 33 H 1.09002 * 109.65003 * 333.03727 * 17 15 13 34 34 H 1.08994 * 109.64868 * 93.33790 * 17 15 13 35 35 H 1.08998 * 110.02755 * 166.46966 * 18 17 15 36 36 H 1.08999 * 110.02343 * 287.84441 * 18 17 15 37 37 H 1.08996 * 110.79109 * 75.83124 * 19 18 17 38 38 H 1.08997 * 110.78976 * 199.10880 * 19 18 17 39 39 H 1.09001 * 109.46948 * 60.00609 * 23 10 9 40 40 H 1.09001 * 109.46699 * 179.97438 * 23 10 9 41 41 H 1.09003 * 109.47684 * 179.97438 * 24 23 10 42 42 H 1.09003 * 109.46970 * 59.99833 * 24 23 10 43 43 H 1.09003 * 109.46625 * 299.99621 * 25 24 23 44 44 H 1.09001 * 109.46806 * 180.02562 * 25 24 23 45 45 H 1.09001 * 109.47119 * 180.02562 * 26 25 24 46 46 H 1.09003 * 109.47157 * 60.00462 * 26 25 24 47 47 H 1.09001 * 109.47447 * 299.99873 * 27 26 25 48 48 H 1.09003 * 109.47684 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0464 -1.4001 5 1 1.4475 2.6528 0.6999 6 1 3.5476 1.4405 0.7001 7 6 2.0103 -1.2020 0.0005 8 1 1.4704 -2.1374 0.0005 9 7 3.3797 -1.2019 0.0063 10 6 4.1116 -2.4628 0.1500 11 6 3.8077 -3.3682 -1.0453 12 7 4.1043 -2.6517 -2.2884 13 6 3.9834 -3.2809 -3.4741 14 8 3.6288 -4.4401 -3.5121 15 6 4.2890 -2.5440 -4.7526 16 1 4.1940 -1.4688 -4.6010 17 6 3.3451 -3.0114 -5.8784 18 6 4.1059 -2.9560 -7.2149 19 6 5.4800 -3.6316 -6.9715 20 16 5.9713 -2.9593 -5.3386 21 8 6.7135 -1.7623 -5.5263 22 8 6.5033 -4.0066 -4.5390 23 6 3.6779 -3.1600 1.4411 24 6 3.9818 -2.2548 2.6364 25 6 5.4839 -1.9690 2.6909 26 6 5.9177 -1.2719 1.3999 27 6 5.6137 -2.1771 0.2046 28 1 -0.4850 0.8400 -0.0004 29 1 3.8650 -0.3671 -0.0847 30 1 4.4237 -4.2655 -0.9874 31 1 2.7545 -3.6487 -1.0302 32 1 4.3877 -1.7245 -2.2579 33 1 3.0204 -4.0336 -5.6837 34 1 2.4760 -2.3553 -5.9240 35 1 3.5535 -3.4992 -7.9817 36 1 4.2477 -1.9195 -7.5210 37 1 5.3758 -4.7157 -6.9280 38 1 6.1946 -3.3438 -7.7426 39 1 2.6078 -3.3635 1.4023 40 1 4.2222 -4.0983 1.5478 41 1 3.6724 -2.7512 3.5562 42 1 3.4372 -1.3166 2.5295 43 1 6.0285 -2.9072 2.7979 44 1 5.7005 -1.3245 3.5429 45 1 6.9879 -1.0688 1.4386 46 1 5.3731 -0.3338 1.2930 47 1 6.1583 -3.1153 0.3115 48 1 5.9231 -1.6807 -0.7152 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001120169867.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:14:51 Heat of formation + Delta-G solvation = -104.914658 kcal Electronic energy + Delta-G solvation = -30249.291142 eV Core-core repulsion = 26238.243167 eV Total energy + Delta-G solvation = -4011.047975 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 344.160 amu Computer time = 2.49 seconds Orbital eigenvalues (eV) -39.88871 -38.73246 -37.25923 -36.40477 -35.98603 -34.59622 -33.39974 -31.55071 -30.56930 -30.34263 -29.12380 -26.37882 -24.89607 -23.51816 -22.30167 -21.82844 -20.76726 -20.29943 -19.05505 -18.34829 -17.81905 -17.54891 -17.24949 -16.55124 -15.78001 -15.41735 -15.08224 -14.88337 -14.48364 -14.37649 -14.21561 -14.10639 -13.87880 -13.52489 -13.43359 -12.71323 -12.65074 -12.50696 -12.40234 -12.27408 -12.25307 -12.21017 -12.05071 -11.92895 -11.67376 -11.29397 -11.26491 -11.02967 -10.92349 -10.86242 -10.62570 -10.52616 -10.31802 -10.07502 -9.95350 -9.74511 -9.68164 -9.39846 -8.95004 -8.63118 -7.36702 -5.83255 -3.20617 -0.29288 2.19054 2.80658 3.16523 3.28386 3.31733 3.39012 3.39394 3.86931 4.07190 4.28434 4.38767 4.51017 4.61888 4.68832 4.98346 5.00769 5.13430 5.14175 5.19315 5.24939 5.32324 5.47168 5.48999 5.61046 5.62734 5.70019 5.84235 5.86844 5.92101 6.01477 6.05926 6.11615 6.17413 6.34029 6.42515 6.47657 6.60354 6.66652 6.70127 6.84478 6.95551 7.07825 7.75062 7.92887 8.34571 8.38738 9.12317 9.84087 10.03612 11.34642 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.011998 B = 0.004082 C = 0.003580 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2333.251876 B = 6857.364077 C = 7819.982650 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.009 3.991 3 Si 0.875 3.125 4 H -0.286 1.286 5 H -0.293 1.293 6 H -0.275 1.275 7 C -0.236 4.236 8 H 0.092 0.908 9 N -0.737 5.737 10 C 0.196 3.804 11 C 0.114 3.886 12 N -0.693 5.693 13 C 0.538 3.462 14 O -0.528 6.528 15 C -0.590 4.590 16 H 0.159 0.841 17 C -0.104 4.104 18 C -0.119 4.119 19 C -0.585 4.585 20 S 2.396 3.604 21 O -0.930 6.930 22 O -0.918 6.918 23 C -0.113 4.113 24 C -0.109 4.109 25 C -0.114 4.114 26 C -0.117 4.117 27 C -0.121 4.121 28 H 0.259 0.741 29 H 0.361 0.639 30 H 0.062 0.938 31 H 0.074 0.926 32 H 0.401 0.599 33 H 0.103 0.897 34 H 0.099 0.901 35 H 0.102 0.898 36 H 0.088 0.912 37 H 0.142 0.858 38 H 0.138 0.862 39 H 0.071 0.929 40 H 0.048 0.952 41 H 0.048 0.952 42 H 0.079 0.921 43 H 0.053 0.947 44 H 0.052 0.948 45 H 0.052 0.948 46 H 0.066 0.934 47 H 0.067 0.933 48 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.774 -5.246 -10.195 16.434 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.187 4.187 3 Si 0.705 3.295 4 H -0.213 1.213 5 H -0.219 1.219 6 H -0.201 1.201 7 C -0.365 4.365 8 H 0.109 0.891 9 N -0.380 5.380 10 C 0.104 3.896 11 C -0.011 4.011 12 N -0.343 5.343 13 C 0.320 3.680 14 O -0.405 6.405 15 C -0.700 4.700 16 H 0.177 0.823 17 C -0.143 4.143 18 C -0.157 4.157 19 C -0.716 4.716 20 S 2.576 3.424 21 O -0.927 6.927 22 O -0.915 6.915 23 C -0.153 4.153 24 C -0.147 4.147 25 C -0.152 4.152 26 C -0.154 4.154 27 C -0.159 4.159 28 H 0.069 0.931 29 H 0.195 0.805 30 H 0.081 0.919 31 H 0.092 0.908 32 H 0.236 0.764 33 H 0.122 0.878 34 H 0.117 0.883 35 H 0.120 0.880 36 H 0.107 0.893 37 H 0.160 0.840 38 H 0.156 0.844 39 H 0.089 0.911 40 H 0.067 0.933 41 H 0.067 0.933 42 H 0.097 0.903 43 H 0.072 0.928 44 H 0.071 0.929 45 H 0.071 0.929 46 H 0.085 0.915 47 H 0.086 0.914 48 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 12.141 -6.008 -9.713 16.668 hybrid contribution -0.249 1.882 -0.396 1.939 sum 11.892 -4.126 -10.110 16.145 Atomic orbital electron populations 1.69689 1.05098 1.25707 1.57326 1.24645 0.95067 0.96879 1.02076 0.86722 0.79508 0.85586 0.77680 1.21331 1.21915 1.20054 1.18927 0.80351 0.94503 1.42768 0.89065 1.42845 1.04047 1.02448 1.88694 1.19808 0.90260 0.87457 0.92051 1.21977 1.01557 0.94536 0.83040 1.45714 1.67099 1.15911 1.05539 1.18809 0.79069 0.86622 0.83461 1.90688 1.46923 1.16397 1.86509 1.30630 1.24205 1.11301 1.03913 0.82315 1.21974 0.98152 1.05474 0.88679 1.22242 0.92629 1.01992 0.98871 1.30627 1.07425 1.12216 1.21298 1.09180 0.77310 0.76424 0.79456 1.93632 1.66830 1.46475 1.85757 1.93650 1.75516 1.55931 1.66445 1.21750 1.01869 0.96944 0.94716 1.21368 0.95063 1.01427 0.96844 1.21497 0.97197 0.99591 0.96895 1.21492 0.99742 0.99385 0.94820 1.21782 0.95985 1.00081 0.98048 0.93114 0.80519 0.91934 0.90816 0.76367 0.87847 0.88283 0.87979 0.89349 0.83998 0.84357 0.91077 0.93303 0.93331 0.90259 0.92819 0.92945 0.92893 0.91523 0.91409 0.92475 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 42. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.70 13.97 55.49 0.78 -26.92 16 2 C 0.01 0.25 5.50 -17.43 -0.10 0.15 16 3 Si 0.87 20.57 27.68 -169.99 -4.71 15.86 16 4 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 5 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 6 H -0.27 -6.03 6.61 56.52 0.37 -5.65 16 7 C -0.24 -5.88 9.18 -15.06 -0.14 -6.02 16 8 H 0.09 2.52 7.01 -52.49 -0.37 2.15 16 9 N -0.74 -14.91 3.19 -47.23 -0.15 -15.06 16 10 C 0.20 3.34 0.41 -131.82 -0.05 3.29 16 11 C 0.11 2.02 4.37 -4.04 -0.02 2.00 16 12 N -0.69 -11.55 5.09 -60.29 -0.31 -11.86 16 13 C 0.54 8.79 6.30 -10.99 -0.07 8.72 16 14 O -0.53 -10.02 15.85 5.55 0.09 -9.93 16 15 C -0.59 -6.99 3.60 -27.27 -0.10 -7.09 16 16 H 0.16 1.57 8.11 -51.93 -0.42 1.14 16 17 C -0.10 -0.99 5.91 -25.66 -0.15 -1.14 16 18 C -0.12 -0.78 6.48 -25.19 -0.16 -0.94 16 19 C -0.59 -4.19 7.31 38.24 0.28 -3.91 16 20 S 2.40 27.44 5.95 -107.50 -0.64 26.80 16 21 O -0.93 -12.65 18.15 -57.71 -1.05 -13.69 16 22 O -0.92 -14.09 17.29 -57.71 -1.00 -15.08 16 23 C -0.11 -1.89 4.51 -26.73 -0.12 -2.01 16 24 C -0.11 -1.78 5.77 -26.74 -0.15 -1.93 16 25 C -0.11 -1.59 5.92 -26.73 -0.16 -1.75 16 26 C -0.12 -1.67 5.75 -26.74 -0.15 -1.83 16 27 C -0.12 -1.78 4.64 -26.74 -0.12 -1.90 16 28 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 29 H 0.36 7.29 4.57 -40.82 -0.19 7.10 16 30 H 0.06 1.06 8.14 -51.93 -0.42 0.63 16 31 H 0.07 1.48 7.51 -51.93 -0.39 1.09 16 32 H 0.40 6.20 7.37 -40.82 -0.30 5.90 16 33 H 0.10 1.11 6.96 -51.93 -0.36 0.74 16 34 H 0.10 0.86 8.14 -51.93 -0.42 0.44 16 35 H 0.10 0.49 8.14 -51.93 -0.42 0.07 16 36 H 0.09 0.46 8.14 -51.93 -0.42 0.03 16 37 H 0.14 0.90 8.14 -51.93 -0.42 0.47 16 38 H 0.14 0.69 8.14 -51.93 -0.42 0.27 16 39 H 0.07 1.35 7.23 -51.93 -0.38 0.97 16 40 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 41 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 42 H 0.08 1.53 7.60 -51.93 -0.39 1.13 16 43 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 44 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 45 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 46 H 0.07 1.08 6.93 -51.93 -0.36 0.72 16 47 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 48 H 0.06 0.80 7.29 -51.93 -0.38 0.43 16 LS Contribution 380.22 15.07 5.73 5.73 Total: -1.00 -34.77 380.22 -10.25 -45.01 By element: Atomic # 1 Polarization: 21.28 SS G_CDS: -7.77 Total: 13.51 kcal Atomic # 6 Polarization: -13.14 SS G_CDS: -1.22 Total: -14.36 kcal Atomic # 7 Polarization: -54.16 SS G_CDS: 0.32 Total: -53.85 kcal Atomic # 8 Polarization: -36.76 SS G_CDS: -1.96 Total: -38.71 kcal Atomic # 14 Polarization: 20.57 SS G_CDS: -4.71 Total: 15.86 kcal Atomic # 16 Polarization: 27.44 SS G_CDS: -0.64 Total: 26.80 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -34.77 -10.25 -45.01 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001120169867.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.901 kcal (2) G-P(sol) polarization free energy of solvation -34.769 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.669 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.245 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.014 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.915 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.49 seconds