Wall clock time and date at job start Wed Apr 1 2020 03:14:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86799 * 119.99503 * 2 1 4 4 H 1.48498 * 109.46911 * 269.99472 * 3 2 1 5 5 H 1.48500 * 109.47673 * 29.99404 * 3 2 1 6 6 H 1.48498 * 109.47441 * 149.99578 * 3 2 1 7 7 C 1.38802 * 120.00245 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00441 * 0.02562 * 7 2 1 9 9 N 1.36941 * 119.99794 * 180.28032 * 7 2 1 10 10 C 1.46504 * 119.99751 * 173.52403 * 9 7 2 11 11 C 1.52996 * 109.47702 * 63.15769 * 10 9 7 12 12 N 1.46509 * 109.46897 * 54.66056 * 11 10 9 13 13 C 1.34777 * 119.99800 * 176.25423 * 12 11 10 14 14 O 1.21284 * 120.00062 * 0.02562 * 13 12 11 15 15 C 1.50700 * 119.99631 * 180.02562 * 13 12 11 16 16 H 1.09000 * 110.28302 * 337.11274 * 15 13 12 17 17 C 1.54167 * 110.31354 * 215.00089 * 15 13 12 18 18 C 1.53885 * 108.70223 * 213.18769 * 17 15 13 19 19 C 1.55048 * 106.62366 * 47.18205 * 18 17 15 20 20 S 1.82914 * 110.31944 * 99.33872 * 15 13 12 21 21 O 1.42098 * 109.35585 * 234.41940 * 20 15 13 22 22 O 1.42100 * 109.35643 * 7.62872 * 20 15 13 23 23 C 1.53004 * 109.46804 * 303.15372 * 10 9 7 24 24 C 1.52989 * 109.47562 * 300.00226 * 23 10 9 25 25 C 1.53001 * 109.47305 * 300.00423 * 24 23 10 26 26 C 1.52996 * 109.47327 * 59.99485 * 25 24 23 27 27 C 1.52989 * 109.47349 * 300.00488 * 26 25 24 28 28 H 0.96996 * 120.00356 * 0.02562 * 1 2 3 29 29 H 0.96994 * 120.00420 * 353.51961 * 9 7 2 30 30 H 1.08994 * 109.47541 * 174.66510 * 11 10 9 31 31 H 1.09003 * 109.46970 * 294.67259 * 11 10 9 32 32 H 0.97002 * 119.99923 * 356.26537 * 12 11 10 33 33 H 1.09002 * 109.65003 * 333.03727 * 17 15 13 34 34 H 1.08994 * 109.64868 * 93.33790 * 17 15 13 35 35 H 1.08998 * 110.02755 * 166.46966 * 18 17 15 36 36 H 1.08999 * 110.02343 * 287.84441 * 18 17 15 37 37 H 1.08996 * 110.79109 * 75.83124 * 19 18 17 38 38 H 1.08997 * 110.78976 * 199.10880 * 19 18 17 39 39 H 1.09001 * 109.46948 * 60.00609 * 23 10 9 40 40 H 1.09001 * 109.46699 * 179.97438 * 23 10 9 41 41 H 1.09003 * 109.47684 * 179.97438 * 24 23 10 42 42 H 1.09003 * 109.46970 * 59.99833 * 24 23 10 43 43 H 1.09003 * 109.46625 * 299.99621 * 25 24 23 44 44 H 1.09001 * 109.46806 * 180.02562 * 25 24 23 45 45 H 1.09001 * 109.47119 * 180.02562 * 26 25 24 46 46 H 1.09003 * 109.47157 * 60.00462 * 26 25 24 47 47 H 1.09001 * 109.47447 * 299.99873 * 27 26 25 48 48 H 1.09003 * 109.47684 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0464 -1.4001 5 1 1.4475 2.6528 0.6999 6 1 3.5476 1.4405 0.7001 7 6 2.0103 -1.2020 0.0005 8 1 1.4704 -2.1374 0.0005 9 7 3.3797 -1.2019 0.0063 10 6 4.1116 -2.4628 0.1500 11 6 3.8077 -3.3682 -1.0453 12 7 4.1043 -2.6517 -2.2884 13 6 3.9834 -3.2809 -3.4741 14 8 3.6288 -4.4401 -3.5121 15 6 4.2890 -2.5440 -4.7526 16 1 4.1940 -1.4688 -4.6010 17 6 3.3451 -3.0114 -5.8784 18 6 4.1059 -2.9560 -7.2149 19 6 5.4800 -3.6316 -6.9715 20 16 5.9713 -2.9593 -5.3386 21 8 6.7135 -1.7623 -5.5263 22 8 6.5033 -4.0066 -4.5390 23 6 3.6779 -3.1600 1.4411 24 6 3.9818 -2.2548 2.6364 25 6 5.4839 -1.9690 2.6909 26 6 5.9177 -1.2719 1.3999 27 6 5.6137 -2.1771 0.2046 28 1 -0.4850 0.8400 -0.0004 29 1 3.8650 -0.3671 -0.0847 30 1 4.4237 -4.2655 -0.9874 31 1 2.7545 -3.6487 -1.0302 32 1 4.3877 -1.7245 -2.2579 33 1 3.0204 -4.0336 -5.6837 34 1 2.4760 -2.3553 -5.9240 35 1 3.5535 -3.4992 -7.9817 36 1 4.2477 -1.9195 -7.5210 37 1 5.3758 -4.7157 -6.9280 38 1 6.1946 -3.3438 -7.7426 39 1 2.6078 -3.3635 1.4023 40 1 4.2222 -4.0983 1.5478 41 1 3.6724 -2.7512 3.5562 42 1 3.4372 -1.3166 2.5295 43 1 6.0285 -2.9072 2.7979 44 1 5.7005 -1.3245 3.5429 45 1 6.9879 -1.0688 1.4386 46 1 5.3731 -0.3338 1.2930 47 1 6.1583 -3.1153 0.3115 48 1 5.9231 -1.6807 -0.7152 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001120169867.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:14:50 Heat of formation + Delta-G solvation = -131.770410 kcal Electronic energy + Delta-G solvation = -30250.455695 eV Core-core repulsion = 26238.243167 eV Total energy + Delta-G solvation = -4012.212528 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 344.160 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.22922 -40.07371 -38.22800 -37.31641 -36.84299 -35.97740 -35.16208 -33.20040 -31.70378 -31.62106 -30.58726 -27.37679 -25.98089 -25.42741 -23.57171 -22.63772 -21.91718 -21.64155 -20.09164 -19.76553 -19.69681 -18.70137 -18.17443 -17.46946 -17.00988 -16.60211 -16.43230 -16.30634 -15.96647 -15.62081 -15.25072 -15.10299 -15.01979 -14.87382 -14.74980 -14.31305 -13.97285 -13.68116 -13.54303 -13.40834 -13.31365 -13.22431 -13.13251 -12.98291 -12.87724 -12.80905 -12.70407 -12.40152 -12.12639 -11.96256 -11.92767 -11.72884 -11.70117 -11.37164 -11.34401 -11.21613 -11.11809 -10.79196 -10.76687 -10.06522 -9.27445 -7.94780 -5.28409 -1.14791 1.28860 1.38360 1.41516 1.48653 1.62125 1.99881 2.51970 2.52442 2.97414 3.26981 3.34744 3.46141 3.54333 3.68033 3.78228 3.83532 3.89594 4.02478 4.08534 4.19853 4.32481 4.39675 4.56468 4.59967 4.66581 4.67431 4.69034 4.73723 4.83431 4.90467 4.98314 4.99718 5.02388 5.13209 5.15376 5.18949 5.34280 5.38864 5.43739 5.47881 5.58154 5.71327 5.88281 6.28276 6.42654 7.07400 7.14687 7.87628 8.08985 9.26938 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.011998 B = 0.004082 C = 0.003580 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2333.251876 B = 6857.364077 C = 7819.982650 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.987 5.987 2 C -0.060 4.060 3 Si 0.939 3.061 4 H -0.279 1.279 5 H -0.309 1.309 6 H -0.247 1.247 7 C -0.198 4.198 8 H 0.053 0.947 9 N -0.731 5.731 10 C 0.193 3.807 11 C 0.120 3.880 12 N -0.698 5.698 13 C 0.529 3.471 14 O -0.562 6.562 15 C -0.593 4.593 16 H 0.176 0.824 17 C -0.107 4.107 18 C -0.115 4.115 19 C -0.552 4.552 20 S 2.388 3.612 21 O -0.955 6.955 22 O -0.967 6.967 23 C -0.112 4.112 24 C -0.107 4.107 25 C -0.109 4.109 26 C -0.116 4.116 27 C -0.118 4.118 28 H 0.252 0.748 29 H 0.366 0.634 30 H 0.071 0.929 31 H 0.036 0.964 32 H 0.407 0.593 33 H 0.087 0.913 34 H 0.106 0.894 35 H 0.132 0.868 36 H 0.110 0.890 37 H 0.156 0.844 38 H 0.173 0.827 39 H 0.035 0.965 40 H 0.074 0.926 41 H 0.058 0.942 42 H 0.043 0.957 43 H 0.074 0.926 44 H 0.064 0.936 45 H 0.080 0.920 46 H 0.047 0.953 47 H 0.086 0.914 48 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.790 -4.866 -12.016 19.667 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.638 5.638 2 C -0.251 4.251 3 Si 0.768 3.232 4 H -0.205 1.205 5 H -0.236 1.236 6 H -0.172 1.172 7 C -0.329 4.329 8 H 0.071 0.929 9 N -0.375 5.375 10 C 0.103 3.897 11 C -0.006 4.006 12 N -0.348 5.348 13 C 0.314 3.686 14 O -0.441 6.441 15 C -0.702 4.702 16 H 0.193 0.807 17 C -0.146 4.146 18 C -0.153 4.153 19 C -0.686 4.686 20 S 2.573 3.427 21 O -0.952 6.952 22 O -0.964 6.964 23 C -0.152 4.152 24 C -0.145 4.145 25 C -0.146 4.146 26 C -0.153 4.153 27 C -0.156 4.156 28 H 0.061 0.939 29 H 0.201 0.799 30 H 0.089 0.911 31 H 0.055 0.945 32 H 0.243 0.757 33 H 0.106 0.894 34 H 0.124 0.876 35 H 0.150 0.850 36 H 0.129 0.871 37 H 0.174 0.826 38 H 0.191 0.809 39 H 0.054 0.946 40 H 0.093 0.907 41 H 0.077 0.923 42 H 0.062 0.938 43 H 0.093 0.907 44 H 0.083 0.917 45 H 0.099 0.901 46 H 0.066 0.934 47 H 0.105 0.895 48 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 15.239 -5.624 -11.495 19.899 hybrid contribution -1.228 1.582 0.114 2.006 sum 14.011 -4.042 -11.381 18.498 Atomic orbital electron populations 1.69883 1.07205 1.26083 1.60649 1.25331 0.95720 1.00547 1.03507 0.85649 0.78982 0.80587 0.77973 1.20532 1.23649 1.17176 1.18722 0.82288 0.92683 1.39189 0.92891 1.42740 1.02294 1.04051 1.88392 1.20012 0.92082 0.85823 0.91754 1.21801 0.99456 0.95265 0.84047 1.45776 1.67271 1.16189 1.05603 1.19553 0.77924 0.86541 0.84626 1.90658 1.48260 1.17972 1.87241 1.30691 1.25638 1.11719 1.02175 0.80683 1.22090 0.98442 1.04555 0.89518 1.22380 0.91695 1.03874 0.97355 1.30495 1.08447 1.12801 1.16888 1.09306 0.76676 0.75552 0.81196 1.93592 1.67513 1.47621 1.86512 1.93585 1.76632 1.56855 1.69354 1.21729 1.00016 0.98404 0.95013 1.21324 0.96964 0.99436 0.96801 1.21474 0.94950 1.00915 0.97294 1.21502 1.01211 0.98187 0.94424 1.21786 0.93332 1.01425 0.99009 0.93861 0.79930 0.91102 0.94508 0.75708 0.89424 0.87597 0.85033 0.87107 0.82611 0.80921 0.94585 0.90721 0.92337 0.93814 0.90710 0.91693 0.90113 0.93436 0.89501 0.91676 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.99 -61.59 13.97 21.65 0.30 -61.29 16 2 C -0.06 -3.36 5.50 84.86 0.47 -2.89 16 3 Si 0.94 43.12 27.68 68.60 1.90 45.02 16 4 H -0.28 -12.38 7.11 99.48 0.71 -11.68 16 5 H -0.31 -14.99 7.11 99.48 0.71 -14.28 16 6 H -0.25 -10.10 6.61 99.48 0.66 -9.45 16 7 C -0.20 -10.28 9.18 84.03 0.77 -9.51 16 8 H 0.05 3.15 7.01 -2.91 -0.02 3.13 16 9 N -0.73 -29.84 3.19 -303.34 -0.97 -30.81 16 10 C 0.19 6.59 0.41 3.60 0.00 6.60 16 11 C 0.12 4.37 4.37 86.38 0.38 4.75 16 12 N -0.70 -23.68 5.09 -463.05 -2.36 -26.04 16 13 C 0.53 17.59 6.30 87.66 0.55 18.14 16 14 O -0.56 -22.06 15.85 -3.04 -0.05 -22.11 16 15 C -0.59 -13.55 3.60 30.24 0.11 -13.44 16 16 H 0.18 3.27 8.11 -2.39 -0.02 3.25 16 17 C -0.11 -1.84 5.91 31.29 0.18 -1.65 16 18 C -0.11 -1.01 6.48 31.59 0.20 -0.80 16 19 C -0.55 -5.70 7.31 72.68 0.53 -5.17 16 20 S 2.39 51.35 5.95 -56.49 -0.34 51.02 16 21 O -0.96 -24.53 18.15 -127.49 -2.31 -26.84 16 22 O -0.97 -29.55 17.29 -127.49 -2.20 -31.75 16 23 C -0.11 -3.78 4.51 30.59 0.14 -3.64 16 24 C -0.11 -3.41 5.77 30.59 0.18 -3.23 16 25 C -0.11 -2.72 5.92 30.59 0.18 -2.53 16 26 C -0.12 -2.95 5.75 30.59 0.18 -2.78 16 27 C -0.12 -3.19 4.64 30.59 0.14 -3.05 16 28 H 0.25 15.25 8.31 -92.71 -0.77 14.48 16 29 H 0.37 14.42 4.57 -92.71 -0.42 13.99 16 30 H 0.07 2.44 8.14 -2.39 -0.02 2.42 16 31 H 0.04 1.59 7.51 -2.39 -0.02 1.57 16 32 H 0.41 12.54 7.37 -92.71 -0.68 11.85 16 33 H 0.09 1.81 6.96 -2.39 -0.02 1.79 16 34 H 0.11 1.66 8.14 -2.39 -0.02 1.65 16 35 H 0.13 0.56 8.14 -2.39 -0.02 0.54 16 36 H 0.11 0.58 8.14 -2.39 -0.02 0.56 16 37 H 0.16 1.35 8.14 -2.39 -0.02 1.33 16 38 H 0.17 0.78 8.14 -2.39 -0.02 0.76 16 39 H 0.04 1.44 7.23 -2.39 -0.02 1.43 16 40 H 0.07 2.13 8.14 -2.39 -0.02 2.11 16 41 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 42 H 0.04 1.69 7.60 -2.39 -0.02 1.67 16 43 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 44 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 45 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 46 H 0.05 1.40 6.93 -2.39 -0.02 1.39 16 47 H 0.09 2.08 8.14 -2.39 -0.02 2.06 16 48 H 0.06 1.68 7.29 -2.39 -0.02 1.66 16 Total: -1.00 -81.19 380.22 -2.19 -83.39 By element: Atomic # 1 Polarization: 38.81 SS G_CDS: -0.18 Total: 38.63 kcal Atomic # 6 Polarization: -23.23 SS G_CDS: 4.01 Total: -19.22 kcal Atomic # 7 Polarization: -115.12 SS G_CDS: -3.02 Total: -118.14 kcal Atomic # 8 Polarization: -76.13 SS G_CDS: -4.57 Total: -80.70 kcal Atomic # 14 Polarization: 43.12 SS G_CDS: 1.90 Total: 45.02 kcal Atomic # 16 Polarization: 51.35 SS G_CDS: -0.34 Total: 51.02 kcal Total: -81.19 -2.19 -83.39 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001120169867.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.383 kcal (2) G-P(sol) polarization free energy of solvation -81.193 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.576 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.194 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.387 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.770 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds