Wall clock time and date at job start Wed Apr 1 2020 03:11:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86804 * 120.00127 * 2 1 4 4 H 1.48504 * 109.47332 * 269.99987 * 3 2 1 5 5 H 1.48502 * 109.46926 * 30.00314 * 3 2 1 6 6 H 1.48498 * 109.47001 * 149.99841 * 3 2 1 7 7 C 1.37884 * 120.00292 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00495 * 186.10323 * 7 2 1 9 9 C 1.50701 * 119.99511 * 6.38394 * 7 2 1 10 10 H 1.08999 * 109.46931 * 184.33933 * 9 7 2 11 11 C 1.50697 * 109.47254 * 304.34086 * 9 7 2 12 12 O 1.21285 * 120.00161 * 119.99876 * 11 9 7 13 13 N 1.34778 * 120.00150 * 300.00433 * 11 9 7 14 14 C 1.46495 * 120.00321 * 179.97438 * 13 11 9 15 15 C 1.52996 * 109.47225 * 179.97438 * 14 13 11 16 16 C 1.53000 * 109.47271 * 179.97438 * 15 14 13 17 17 N 1.46496 * 109.47554 * 179.97438 * 16 15 14 18 18 C 1.35310 * 125.87081 * 124.71129 * 17 16 15 19 19 C 1.35347 * 106.17845 * 179.90889 * 18 17 16 20 20 C 1.50704 * 126.75504 * 180.12944 * 19 18 17 21 21 O 1.42901 * 109.46832 * 0.24864 * 20 19 18 22 22 N 1.33771 * 106.49563 * 0.35623 * 19 18 17 23 23 N 1.28636 * 108.88713 * 359.77144 * 22 19 18 24 24 C 1.50707 * 109.47321 * 64.34208 * 9 7 2 25 25 C 1.38231 * 119.99747 * 193.11117 * 24 9 7 26 26 C 1.38239 * 119.99587 * 179.81056 * 25 24 9 27 27 C 1.38234 * 120.00152 * 0.39676 * 26 25 24 28 28 C 1.38241 * 119.99706 * 359.85520 * 27 26 25 29 29 C 1.38232 * 120.00142 * 359.96190 * 28 27 26 30 30 H 0.97000 * 120.00092 * 359.97438 * 1 2 3 31 31 H 0.97001 * 119.99421 * 359.97438 * 13 11 9 32 32 H 1.08999 * 109.47284 * 299.99759 * 14 13 11 33 33 H 1.08997 * 109.47298 * 59.99804 * 14 13 11 34 34 H 1.08997 * 109.47459 * 299.99940 * 15 14 13 35 35 H 1.08998 * 109.47335 * 60.00192 * 15 14 13 36 36 H 1.08999 * 109.47424 * 300.00127 * 16 15 14 37 37 H 1.09007 * 109.47178 * 60.00139 * 16 15 14 38 38 H 1.08006 * 126.91089 * 0.02562 * 18 17 16 39 39 H 1.09003 * 109.47178 * 120.24524 * 20 19 18 40 40 H 1.08995 * 109.46693 * 240.24555 * 20 19 18 41 41 H 0.96696 * 113.99963 * 180.02562 * 21 20 19 42 42 H 1.07999 * 120.00205 * 0.02562 * 25 24 9 43 43 H 1.07999 * 119.99763 * 180.23613 * 26 25 24 44 44 H 1.07991 * 120.00266 * 179.83487 * 27 26 25 45 45 H 1.08005 * 119.99490 * 179.97438 * 28 27 26 46 46 H 1.08003 * 119.99947 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0465 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4401 0.7001 7 6 2.0046 -1.1941 -0.0005 8 1 3.0800 -1.1968 0.0989 9 6 1.2580 -2.4950 -0.1462 10 1 1.9552 -3.3270 -0.0474 11 6 0.2043 -2.5924 0.9266 12 8 -0.9649 -2.6950 0.6208 13 7 0.5610 -2.5655 2.2261 14 6 -0.4634 -2.6596 3.2691 15 6 0.2034 -2.6062 4.6451 16 6 -0.8665 -2.7038 5.7344 17 7 -0.2281 -2.6533 7.0520 18 6 -0.5203 -1.7779 8.0415 19 6 0.2988 -2.0880 9.0734 20 6 0.3592 -1.4027 10.4143 21 8 -0.6031 -0.3470 10.4534 22 7 1.0478 -3.1193 8.6671 23 7 0.7112 -3.4304 7.4652 24 6 0.6013 -2.5484 -1.5017 25 6 -0.3554 -3.5097 -1.7687 26 6 -0.9606 -3.5561 -3.0107 27 6 -0.6031 -2.6464 -3.9883 28 6 0.3575 -1.6884 -3.7228 29 6 0.9600 -1.6396 -2.4796 30 1 -0.4850 0.8400 0.0004 31 1 1.4962 -2.4838 2.4706 32 1 -1.1602 -1.8273 3.1701 33 1 -1.0037 -3.6003 3.1638 34 1 0.9000 -3.4387 4.7439 35 1 0.7440 -1.6656 4.7506 36 1 -1.5629 -1.8711 5.6355 37 1 -1.4076 -3.6443 5.6291 38 1 -1.2599 -0.9913 8.0142 39 1 0.1393 -2.1242 11.2012 40 1 1.3568 -0.9910 10.5671 41 1 -0.6198 0.1391 11.2891 42 1 -0.6327 -4.2222 -1.0059 43 1 -1.7109 -4.3047 -3.2181 44 1 -1.0739 -2.6844 -4.9594 45 1 0.6372 -0.9780 -4.4867 46 1 1.7101 -0.8909 -2.2721 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001141801181.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:11:18 Heat of formation + Delta-G solvation = 36.488172 kcal Electronic energy + Delta-G solvation = -29032.833433 eV Core-core repulsion = 24924.765945 eV Total energy + Delta-G solvation = -4108.067488 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.164 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -43.40908 -38.99949 -37.61040 -37.31794 -36.06642 -33.91499 -33.60950 -31.66397 -31.06973 -30.81119 -29.72551 -27.62874 -26.82607 -25.97515 -23.94882 -22.47802 -21.97192 -21.29452 -20.90589 -20.51822 -19.16511 -17.78916 -17.26982 -16.91585 -16.61032 -15.92732 -15.62437 -15.21591 -15.08337 -14.96744 -14.84196 -14.77389 -14.51975 -13.95845 -13.67946 -13.40384 -12.86252 -12.79587 -12.50083 -12.34108 -12.25950 -11.96986 -11.94594 -11.71083 -11.51435 -11.33877 -11.08591 -10.99097 -10.93467 -10.82579 -10.77023 -10.47313 -10.14069 -10.07411 -9.71185 -9.40837 -9.25568 -8.78233 -8.30744 -8.02937 -7.73444 -7.44311 -6.19348 -4.32887 1.47107 2.17446 2.31576 2.50553 2.56183 3.16903 3.26311 3.27155 3.51831 4.01123 4.16489 4.26943 4.37719 4.58280 4.71019 4.79978 4.87059 4.90392 5.00205 5.09943 5.11051 5.20518 5.22152 5.35808 5.61453 5.73157 5.82355 5.89166 5.93812 6.01701 6.10859 6.20681 6.36079 6.43053 6.55955 6.64057 6.77362 6.87986 7.09428 7.17145 7.17644 7.47387 7.52477 7.60181 7.65896 7.75685 8.11754 8.23488 8.35306 8.58121 8.78020 9.33430 9.68907 10.82472 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.015509 B = 0.002299 C = 0.002099 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1804.956594 B =12177.980669 C =13338.101860 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.843 5.843 2 C 0.077 3.923 3 Si 0.885 3.115 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.272 1.272 7 C -0.541 4.541 8 H 0.067 0.933 9 C 0.056 3.944 10 H 0.057 0.943 11 C 0.556 3.444 12 O -0.549 6.549 13 N -0.736 5.736 14 C 0.134 3.866 15 C -0.143 4.143 16 C 0.118 3.882 17 N -0.287 5.287 18 C -0.021 4.021 19 C -0.039 4.039 20 C 0.170 3.830 21 O -0.572 6.572 22 N -0.266 5.266 23 N -0.077 5.077 24 C -0.017 4.017 25 C -0.099 4.099 26 C -0.143 4.143 27 C -0.145 4.145 28 C -0.147 4.147 29 C -0.073 4.073 30 H 0.265 0.735 31 H 0.397 0.603 32 H 0.062 0.938 33 H 0.058 0.942 34 H 0.086 0.914 35 H 0.078 0.922 36 H 0.111 0.889 37 H 0.104 0.896 38 H 0.193 0.807 39 H 0.066 0.934 40 H 0.067 0.933 41 H 0.389 0.611 42 H 0.108 0.892 43 H 0.102 0.898 44 H 0.101 0.899 45 H 0.102 0.898 46 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.560 -2.257 14.020 14.286 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.475 5.475 2 C -0.131 4.131 3 Si 0.712 3.288 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.197 1.197 7 C -0.578 4.578 8 H 0.085 0.915 9 C 0.035 3.965 10 H 0.075 0.925 11 C 0.345 3.655 12 O -0.425 6.425 13 N -0.389 5.389 14 C 0.008 3.992 15 C -0.182 4.182 16 C -0.003 4.003 17 N -0.081 5.081 18 C -0.172 4.172 19 C -0.177 4.177 20 C 0.090 3.910 21 O -0.378 6.378 22 N -0.135 5.135 23 N -0.056 5.056 24 C -0.018 4.018 25 C -0.117 4.117 26 C -0.161 4.161 27 C -0.163 4.163 28 C -0.165 4.165 29 C -0.091 4.091 30 H 0.075 0.925 31 H 0.230 0.770 32 H 0.080 0.920 33 H 0.076 0.924 34 H 0.105 0.895 35 H 0.096 0.904 36 H 0.129 0.871 37 H 0.123 0.877 38 H 0.210 0.790 39 H 0.084 0.916 40 H 0.085 0.915 41 H 0.237 0.763 42 H 0.126 0.874 43 H 0.120 0.880 44 H 0.119 0.881 45 H 0.120 0.880 46 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -1.843 -3.606 12.796 13.421 hybrid contribution -0.045 2.446 0.837 2.586 sum -1.888 -1.160 13.633 13.812 Atomic orbital electron populations 1.70026 1.05458 1.26981 1.45080 1.25040 0.94795 0.99156 0.94147 0.86700 0.80001 0.83588 0.78531 1.20247 1.21290 1.19688 1.20708 0.93431 0.88933 1.54775 0.91504 1.17878 0.92518 0.98246 0.87899 0.92476 1.20931 0.90315 0.71769 0.82473 1.90526 1.20380 1.49609 1.82018 1.45705 1.09298 1.78327 1.05597 1.20844 0.91849 1.01535 0.84940 1.22071 0.98097 1.04625 0.93404 1.22160 0.95799 1.05841 0.76549 1.47499 1.25281 1.21506 1.13772 1.23385 1.05414 0.99612 0.88760 1.21620 0.99019 0.99019 0.98065 1.19854 0.92147 0.88328 0.90671 1.86369 1.60322 1.48914 1.42159 1.75002 1.21898 1.12830 1.03731 1.78300 1.04326 1.16156 1.06862 1.19866 0.94231 0.92409 0.95246 1.20991 0.96377 0.99125 0.95229 1.20845 1.00936 0.99915 0.94418 1.20786 0.99613 0.97449 0.98432 1.21006 0.98838 0.99150 0.97514 1.21181 0.99086 0.97441 0.91423 0.92491 0.77004 0.92014 0.92406 0.89532 0.90366 0.87109 0.87745 0.78975 0.91576 0.91503 0.76277 0.87364 0.88014 0.88129 0.87968 0.85445 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -22.46 11.11 55.43 0.62 -21.85 16 2 C 0.08 1.89 3.90 -17.82 -0.07 1.82 16 3 Si 0.88 19.54 29.54 -169.99 -5.02 14.52 16 4 H -0.28 -6.14 7.11 56.52 0.40 -5.73 16 5 H -0.29 -6.48 7.11 56.52 0.40 -6.08 16 6 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 7 C -0.54 -12.92 7.11 -34.44 -0.24 -13.16 16 8 H 0.07 1.56 7.82 -52.49 -0.41 1.15 16 9 C 0.06 1.28 2.78 -94.07 -0.26 1.02 16 10 H 0.06 1.21 8.14 -51.93 -0.42 0.78 16 11 C 0.56 12.66 5.28 -10.99 -0.06 12.61 16 12 O -0.55 -14.10 13.86 5.55 0.08 -14.02 16 13 N -0.74 -13.73 5.45 -60.30 -0.33 -14.06 16 14 C 0.13 2.03 5.67 -4.05 -0.02 2.00 16 15 C -0.14 -1.68 5.45 -26.73 -0.15 -1.83 16 16 C 0.12 1.12 6.46 -4.04 -0.03 1.10 16 17 N -0.29 -3.40 3.44 -61.26 -0.21 -3.61 16 18 C -0.02 -0.23 10.91 -17.05 -0.19 -0.41 16 19 C -0.04 -0.46 7.22 -82.78 -0.60 -1.06 16 20 C 0.17 1.34 7.67 36.01 0.28 1.62 16 21 O -0.57 -4.00 13.04 -35.23 -0.46 -4.46 16 22 N -0.27 -3.82 12.41 33.29 0.41 -3.41 16 23 N -0.08 -1.10 12.91 60.35 0.78 -0.33 16 24 C -0.02 -0.39 4.63 -104.62 -0.48 -0.87 16 25 C -0.10 -2.21 8.21 -39.58 -0.32 -2.53 16 26 C -0.14 -2.89 10.05 -39.58 -0.40 -3.28 16 27 C -0.14 -2.82 10.05 -39.58 -0.40 -3.22 16 28 C -0.15 -3.03 10.05 -39.58 -0.40 -3.43 16 29 C -0.07 -1.69 8.46 -39.59 -0.33 -2.02 16 30 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 31 H 0.40 6.84 8.36 -40.82 -0.34 6.50 16 32 H 0.06 1.04 8.14 -51.93 -0.42 0.61 16 33 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 34 H 0.09 1.04 8.12 -51.93 -0.42 0.62 16 35 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 36 H 0.11 0.84 8.07 -51.93 -0.42 0.42 16 37 H 0.10 0.86 8.14 -51.92 -0.42 0.44 16 38 H 0.19 1.64 7.93 -52.48 -0.42 1.23 16 39 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 40 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 41 H 0.39 0.76 9.12 45.56 0.42 1.17 16 42 H 0.11 2.38 6.98 -52.49 -0.37 2.02 16 43 H 0.10 1.77 8.06 -52.49 -0.42 1.35 16 44 H 0.10 1.65 8.06 -52.49 -0.42 1.23 16 45 H 0.10 1.85 8.06 -52.48 -0.42 1.42 16 46 H 0.13 3.02 6.05 -52.48 -0.32 2.71 16 LS Contribution 388.91 15.07 5.86 5.86 Total: -1.00 -33.40 388.91 -7.59 -40.99 By element: Atomic # 1 Polarization: 17.66 SS G_CDS: -5.64 Total: 12.02 kcal Atomic # 6 Polarization: -7.98 SS G_CDS: -3.67 Total: -11.65 kcal Atomic # 7 Polarization: -44.52 SS G_CDS: 1.27 Total: -43.25 kcal Atomic # 8 Polarization: -18.10 SS G_CDS: -0.38 Total: -18.48 kcal Atomic # 14 Polarization: 19.54 SS G_CDS: -5.02 Total: 14.52 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -33.40 -7.59 -40.99 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001141801181.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.473 kcal (2) G-P(sol) polarization free energy of solvation -33.397 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.076 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.588 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.985 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.488 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds