Wall clock time and date at job start Wed Apr 1 2020 03:11:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86804 * 120.00127 * 2 1 4 4 H 1.48504 * 109.47332 * 269.99987 * 3 2 1 5 5 H 1.48502 * 109.46926 * 30.00314 * 3 2 1 6 6 H 1.48498 * 109.47001 * 149.99841 * 3 2 1 7 7 C 1.37884 * 120.00292 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00495 * 186.10323 * 7 2 1 9 9 C 1.50701 * 119.99511 * 6.38394 * 7 2 1 10 10 H 1.08999 * 109.46931 * 184.33933 * 9 7 2 11 11 C 1.50697 * 109.47254 * 304.34086 * 9 7 2 12 12 O 1.21285 * 120.00161 * 119.99876 * 11 9 7 13 13 N 1.34778 * 120.00150 * 300.00433 * 11 9 7 14 14 C 1.46495 * 120.00321 * 179.97438 * 13 11 9 15 15 C 1.52996 * 109.47225 * 179.97438 * 14 13 11 16 16 C 1.53000 * 109.47271 * 179.97438 * 15 14 13 17 17 N 1.46496 * 109.47554 * 179.97438 * 16 15 14 18 18 C 1.35310 * 125.87081 * 124.71129 * 17 16 15 19 19 C 1.35347 * 106.17845 * 179.90889 * 18 17 16 20 20 C 1.50704 * 126.75504 * 180.12944 * 19 18 17 21 21 O 1.42901 * 109.46832 * 0.24864 * 20 19 18 22 22 N 1.33771 * 106.49563 * 0.35623 * 19 18 17 23 23 N 1.28636 * 108.88713 * 359.77144 * 22 19 18 24 24 C 1.50707 * 109.47321 * 64.34208 * 9 7 2 25 25 C 1.38231 * 119.99747 * 193.11117 * 24 9 7 26 26 C 1.38239 * 119.99587 * 179.81056 * 25 24 9 27 27 C 1.38234 * 120.00152 * 0.39676 * 26 25 24 28 28 C 1.38241 * 119.99706 * 359.85520 * 27 26 25 29 29 C 1.38232 * 120.00142 * 359.96190 * 28 27 26 30 30 H 0.97000 * 120.00092 * 359.97438 * 1 2 3 31 31 H 0.97001 * 119.99421 * 359.97438 * 13 11 9 32 32 H 1.08999 * 109.47284 * 299.99759 * 14 13 11 33 33 H 1.08997 * 109.47298 * 59.99804 * 14 13 11 34 34 H 1.08997 * 109.47459 * 299.99940 * 15 14 13 35 35 H 1.08998 * 109.47335 * 60.00192 * 15 14 13 36 36 H 1.08999 * 109.47424 * 300.00127 * 16 15 14 37 37 H 1.09007 * 109.47178 * 60.00139 * 16 15 14 38 38 H 1.08006 * 126.91089 * 0.02562 * 18 17 16 39 39 H 1.09003 * 109.47178 * 120.24524 * 20 19 18 40 40 H 1.08995 * 109.46693 * 240.24555 * 20 19 18 41 41 H 0.96696 * 113.99963 * 180.02562 * 21 20 19 42 42 H 1.07999 * 120.00205 * 0.02562 * 25 24 9 43 43 H 1.07999 * 119.99763 * 180.23613 * 26 25 24 44 44 H 1.07991 * 120.00266 * 179.83487 * 27 26 25 45 45 H 1.08005 * 119.99490 * 179.97438 * 28 27 26 46 46 H 1.08003 * 119.99947 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0465 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4401 0.7001 7 6 2.0046 -1.1941 -0.0005 8 1 3.0800 -1.1968 0.0989 9 6 1.2580 -2.4950 -0.1462 10 1 1.9552 -3.3270 -0.0474 11 6 0.2043 -2.5924 0.9266 12 8 -0.9649 -2.6950 0.6208 13 7 0.5610 -2.5655 2.2261 14 6 -0.4634 -2.6596 3.2691 15 6 0.2034 -2.6062 4.6451 16 6 -0.8665 -2.7038 5.7344 17 7 -0.2281 -2.6533 7.0520 18 6 -0.5203 -1.7779 8.0415 19 6 0.2988 -2.0880 9.0734 20 6 0.3592 -1.4027 10.4143 21 8 -0.6031 -0.3470 10.4534 22 7 1.0478 -3.1193 8.6671 23 7 0.7112 -3.4304 7.4652 24 6 0.6013 -2.5484 -1.5017 25 6 -0.3554 -3.5097 -1.7687 26 6 -0.9606 -3.5561 -3.0107 27 6 -0.6031 -2.6464 -3.9883 28 6 0.3575 -1.6884 -3.7228 29 6 0.9600 -1.6396 -2.4796 30 1 -0.4850 0.8400 0.0004 31 1 1.4962 -2.4838 2.4706 32 1 -1.1602 -1.8273 3.1701 33 1 -1.0037 -3.6003 3.1638 34 1 0.9000 -3.4387 4.7439 35 1 0.7440 -1.6656 4.7506 36 1 -1.5629 -1.8711 5.6355 37 1 -1.4076 -3.6443 5.6291 38 1 -1.2599 -0.9913 8.0142 39 1 0.1393 -2.1242 11.2012 40 1 1.3568 -0.9910 10.5671 41 1 -0.6198 0.1391 11.2891 42 1 -0.6327 -4.2222 -1.0059 43 1 -1.7109 -4.3047 -3.2181 44 1 -1.0739 -2.6844 -4.9594 45 1 0.6372 -0.9780 -4.4867 46 1 1.7101 -0.8909 -2.2721 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001141801181.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:11:17 Heat of formation + Delta-G solvation = 12.374869 kcal Electronic energy + Delta-G solvation = -29033.879064 eV Core-core repulsion = 24924.765945 eV Total energy + Delta-G solvation = -4109.113119 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.164 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -44.30780 -40.69627 -39.18008 -37.91661 -37.13603 -35.46486 -35.18637 -32.70359 -32.48934 -32.17053 -31.37408 -29.19408 -27.68204 -27.11149 -25.68596 -23.65843 -22.94766 -22.84049 -22.13379 -21.82559 -20.82845 -18.64842 -18.53809 -17.92621 -17.62363 -17.44438 -17.04520 -16.67385 -16.52064 -16.45280 -15.76736 -15.59289 -15.50699 -15.44692 -15.31691 -14.85094 -14.30228 -14.07100 -14.01926 -13.83520 -13.51250 -13.40753 -13.08396 -12.98801 -12.81199 -12.75815 -12.54549 -12.51857 -12.28659 -12.12631 -11.84648 -11.77508 -11.45450 -11.42973 -11.17505 -10.99736 -10.67752 -10.12513 -10.06706 -9.61931 -9.39603 -9.11430 -8.10055 -6.26472 0.57895 0.86335 0.90783 1.34419 1.39894 1.41392 1.45240 1.50927 2.34079 2.47567 2.78668 2.91965 3.18604 3.32957 3.49624 3.79262 3.81658 3.96185 3.98905 4.21133 4.26482 4.31691 4.33451 4.35847 4.49387 4.53520 4.56394 4.61660 4.66762 4.78655 4.82618 4.96666 5.00671 5.01977 5.10145 5.13504 5.19448 5.44728 5.52830 5.58219 5.70321 5.87750 5.91519 5.96616 6.01109 6.41116 6.51608 6.75561 6.92210 7.09789 7.41790 7.42343 7.96908 8.90469 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.015509 B = 0.002299 C = 0.002099 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1804.956594 B =12177.980669 C =13338.101860 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.872 5.872 2 C 0.045 3.955 3 Si 0.935 3.065 4 H -0.277 1.277 5 H -0.294 1.294 6 H -0.264 1.264 7 C -0.536 4.536 8 H 0.068 0.932 9 C 0.045 3.955 10 H 0.066 0.934 11 C 0.554 3.446 12 O -0.583 6.583 13 N -0.731 5.731 14 C 0.138 3.862 15 C -0.125 4.125 16 C 0.117 3.883 17 N -0.285 5.285 18 C -0.020 4.020 19 C -0.052 4.052 20 C 0.173 3.827 21 O -0.584 6.584 22 N -0.296 5.296 23 N -0.111 5.111 24 C -0.039 4.039 25 C -0.116 4.116 26 C -0.144 4.144 27 C -0.141 4.141 28 C -0.151 4.151 29 C -0.096 4.096 30 H 0.256 0.744 31 H 0.403 0.597 32 H 0.047 0.953 33 H 0.064 0.936 34 H 0.083 0.917 35 H 0.069 0.931 36 H 0.136 0.864 37 H 0.121 0.879 38 H 0.218 0.782 39 H 0.080 0.920 40 H 0.076 0.924 41 H 0.410 0.590 42 H 0.102 0.898 43 H 0.131 0.869 44 H 0.139 0.861 45 H 0.127 0.873 46 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.091 -1.787 14.233 14.496 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.507 5.507 2 C -0.159 4.159 3 Si 0.762 3.238 4 H -0.203 1.203 5 H -0.220 1.220 6 H -0.188 1.188 7 C -0.573 4.573 8 H 0.087 0.913 9 C 0.024 3.976 10 H 0.084 0.916 11 C 0.343 3.657 12 O -0.462 6.462 13 N -0.383 5.383 14 C 0.013 3.987 15 C -0.164 4.164 16 C -0.003 4.003 17 N -0.078 5.078 18 C -0.171 4.171 19 C -0.190 4.190 20 C 0.094 3.906 21 O -0.393 6.393 22 N -0.163 5.163 23 N -0.090 5.090 24 C -0.040 4.040 25 C -0.134 4.134 26 C -0.162 4.162 27 C -0.159 4.159 28 C -0.169 4.169 29 C -0.114 4.114 30 H 0.066 0.934 31 H 0.237 0.763 32 H 0.065 0.935 33 H 0.083 0.917 34 H 0.102 0.898 35 H 0.088 0.912 36 H 0.154 0.846 37 H 0.139 0.861 38 H 0.234 0.766 39 H 0.098 0.902 40 H 0.094 0.906 41 H 0.262 0.738 42 H 0.120 0.880 43 H 0.149 0.851 44 H 0.157 0.843 45 H 0.145 0.855 46 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -2.325 -3.144 13.050 13.623 hybrid contribution 0.112 2.281 0.767 2.409 sum -2.213 -0.863 13.817 14.020 Atomic orbital electron populations 1.70176 1.06714 1.26752 1.47024 1.25509 0.95082 1.01405 0.93945 0.85900 0.79144 0.80521 0.78241 1.20319 1.22023 1.18828 1.20877 0.93477 0.89450 1.53519 0.91336 1.17999 0.92936 0.98178 0.88493 0.91586 1.20859 0.89657 0.71541 0.83624 1.90491 1.21480 1.51466 1.82793 1.45649 1.10427 1.76888 1.05295 1.20910 0.91027 1.01173 0.85620 1.21829 0.98376 1.04014 0.92163 1.22295 0.95067 1.07929 0.74993 1.47629 1.24742 1.21154 1.14305 1.23852 1.05478 0.99560 0.88238 1.22314 0.98424 0.98479 0.99812 1.19878 0.92893 0.88829 0.89012 1.86306 1.60000 1.48873 1.44126 1.74941 1.23077 1.14216 1.04091 1.78243 1.05795 1.17537 1.07388 1.19990 0.95218 0.93332 0.95459 1.21060 0.96895 0.99201 0.96292 1.21224 1.00871 1.00537 0.93611 1.21196 0.98707 0.96163 0.99807 1.21332 0.98625 0.99853 0.97126 1.21169 0.99877 0.97621 0.92770 0.93417 0.76294 0.93510 0.91741 0.89792 0.91242 0.84637 0.86106 0.76570 0.90199 0.90587 0.73756 0.88023 0.85106 0.84327 0.85537 0.87026 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -47.19 11.11 21.45 0.24 -46.96 16 2 C 0.05 2.25 3.90 84.66 0.33 2.58 16 3 Si 0.94 40.21 29.54 68.60 2.03 42.23 16 4 H -0.28 -11.88 7.11 99.48 0.71 -11.17 16 5 H -0.29 -12.90 7.11 99.48 0.71 -12.19 16 6 H -0.26 -10.89 7.11 99.48 0.71 -10.19 16 7 C -0.54 -25.79 7.11 25.60 0.18 -25.60 16 8 H 0.07 3.20 7.82 -2.91 -0.02 3.18 16 9 C 0.05 2.11 2.78 -13.03 -0.04 2.07 16 10 H 0.07 2.85 8.14 -2.39 -0.02 2.83 16 11 C 0.55 25.66 5.28 87.66 0.46 26.12 16 12 O -0.58 -30.54 13.86 -3.04 -0.04 -30.58 16 13 N -0.73 -27.49 5.45 -463.08 -2.53 -30.02 16 14 C 0.14 4.13 5.67 86.38 0.49 4.62 16 15 C -0.13 -2.85 5.45 30.59 0.17 -2.69 16 16 C 0.12 2.06 6.46 86.38 0.56 2.62 16 17 N -0.28 -6.41 3.44 -347.73 -1.20 -7.60 16 18 C -0.02 -0.41 10.91 83.49 0.91 0.51 16 19 C -0.05 -1.16 7.22 41.60 0.30 -0.86 16 20 C 0.17 2.44 7.67 71.24 0.55 2.99 16 21 O -0.58 -6.82 13.04 -148.98 -1.94 -8.77 16 22 N -0.30 -8.42 12.41 -48.60 -0.60 -9.02 16 23 N -0.11 -3.15 12.91 37.02 0.48 -2.67 16 24 C -0.04 -1.86 4.63 -19.86 -0.09 -1.95 16 25 C -0.12 -5.19 8.21 22.27 0.18 -5.01 16 26 C -0.14 -5.59 10.05 22.27 0.22 -5.36 16 27 C -0.14 -5.13 10.05 22.27 0.22 -4.90 16 28 C -0.15 -6.03 10.05 22.27 0.22 -5.80 16 29 C -0.10 -4.45 8.46 22.27 0.19 -4.26 16 30 H 0.26 13.82 8.31 -92.71 -0.77 13.05 16 31 H 0.40 13.96 8.36 -92.71 -0.77 13.19 16 32 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 33 H 0.06 1.87 8.14 -2.39 -0.02 1.85 16 34 H 0.08 1.99 8.12 -2.39 -0.02 1.97 16 35 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 36 H 0.14 1.73 8.07 -2.39 -0.02 1.71 16 37 H 0.12 1.77 8.14 -2.38 -0.02 1.75 16 38 H 0.22 3.15 7.93 -2.91 -0.02 3.13 16 39 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 40 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 41 H 0.41 0.59 9.12 -74.06 -0.68 -0.08 16 42 H 0.10 4.56 6.98 -2.91 -0.02 4.54 16 43 H 0.13 4.20 8.06 -2.91 -0.02 4.18 16 44 H 0.14 3.96 8.06 -2.92 -0.02 3.94 16 45 H 0.13 4.30 8.06 -2.91 -0.02 4.28 16 46 H 0.11 5.39 6.05 -2.91 -0.02 5.37 16 Total: -1.00 -72.81 388.91 0.87 -71.94 By element: Atomic # 1 Polarization: 36.79 SS G_CDS: -0.43 Total: 36.36 kcal Atomic # 6 Polarization: -19.78 SS G_CDS: 4.86 Total: -14.92 kcal Atomic # 7 Polarization: -92.66 SS G_CDS: -3.61 Total: -96.27 kcal Atomic # 8 Polarization: -37.36 SS G_CDS: -1.99 Total: -39.35 kcal Atomic # 14 Polarization: 40.21 SS G_CDS: 2.03 Total: 42.23 kcal Total: -72.81 0.87 -71.94 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001141801181.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.317 kcal (2) G-P(sol) polarization free energy of solvation -72.807 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.510 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.865 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.942 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.375 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds