Wall clock time and date at job start Wed Apr 1 2020 02:21:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81007 * 1 3 3 C 1.76205 * 99.99766 * 2 1 4 4 N 1.32019 * 118.62853 * 0.02562 * 3 2 1 5 5 C 1.34102 * 120.40373 * 180.02562 * 4 3 2 6 6 C 1.40160 * 121.90072 * 180.02562 * 5 4 3 7 7 C 1.36344 * 119.58923 * 179.97438 * 6 5 4 8 8 C 1.39180 * 121.00626 * 359.97438 * 7 6 5 9 9 C 1.36420 * 120.89892 * 0.02562 * 8 7 6 10 10 C 1.39880 * 119.52936 * 0.02562 * 9 8 7 11 11 C 1.41753 * 122.01784 * 180.02562 * 10 9 8 12 12 N 1.37845 * 120.83621 * 359.93794 * 11 10 9 13 13 C 1.46960 * 110.99613 * 238.94226 * 12 11 10 14 14 C 1.53055 * 109.36243 * 176.81273 * 13 12 11 15 15 N 1.46955 * 109.36178 * 58.39845 * 14 13 12 16 16 C 1.46901 * 110.99544 * 176.81165 * 15 14 13 17 17 C 1.50697 * 109.47577 * 58.99238 * 16 15 14 18 18 H 1.08005 * 119.99443 * 5.10224 * 17 16 15 19 19 C 1.37871 * 120.00421 * 185.09915 * 17 16 15 20 20 N 1.31510 * 120.00021 * 0.02562 * 19 17 16 21 21 Si 1.86806 * 120.00027 * 179.97438 * 19 17 16 22 22 H 1.48499 * 109.46905 * 0.02562 * 21 19 17 23 23 H 1.48499 * 109.46844 * 120.00169 * 21 19 17 24 24 H 1.48504 * 109.47037 * 240.00367 * 21 19 17 25 25 C 1.46952 * 110.88597 * 300.68030 * 15 14 13 26 26 C 1.46955 * 110.99735 * 115.14138 * 12 11 10 27 27 N 1.32467 * 118.32047 * 179.69344 * 11 10 9 28 28 H 1.08996 * 109.47061 * 300.00103 * 1 2 3 29 29 H 1.09000 * 109.46799 * 59.99974 * 1 2 3 30 30 H 1.08993 * 109.46727 * 179.97438 * 1 2 3 31 31 H 1.08004 * 120.20376 * 0.02562 * 6 5 4 32 32 H 1.08003 * 119.49417 * 180.02562 * 7 6 5 33 33 H 1.07999 * 119.54870 * 179.97438 * 8 7 6 34 34 H 1.08004 * 120.23906 * 180.02562 * 9 8 7 35 35 H 1.08995 * 109.48548 * 296.77663 * 13 12 11 36 36 H 1.08993 * 109.48800 * 56.84881 * 13 12 11 37 37 H 1.08995 * 109.48537 * 298.43396 * 14 13 12 38 38 H 1.09000 * 109.48847 * 178.36885 * 14 13 12 39 39 H 1.09009 * 109.46930 * 178.99258 * 16 15 14 40 40 H 1.08997 * 109.47316 * 298.98937 * 16 15 14 41 41 H 0.97000 * 120.00455 * 179.97438 * 20 19 17 42 42 H 1.09003 * 109.48627 * 299.35719 * 25 15 14 43 43 H 1.09000 * 109.49108 * 179.29271 * 25 15 14 44 44 H 1.08995 * 109.48973 * 303.15062 * 26 12 11 45 45 H 1.09002 * 109.48734 * 63.20413 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8101 0.0000 0.0000 3 6 2.1160 1.7353 0.0000 4 7 1.0846 2.5594 0.0005 5 6 1.2764 3.8866 0.0000 6 6 0.2046 4.7899 0.0011 7 6 0.4539 6.1303 0.0010 8 6 1.7578 6.6171 0.0005 9 6 2.8235 5.7655 -0.0005 10 6 2.6023 4.3843 -0.0016 11 6 3.6702 3.4521 -0.0022 12 7 4.9809 3.8792 -0.0029 13 6 5.7001 3.3692 -1.1787 14 6 7.1246 3.9289 -1.1843 15 7 7.8066 3.5379 0.0574 16 6 9.2034 3.9930 0.0564 17 6 9.2432 5.4924 -0.0889 18 1 8.3240 6.0594 -0.0894 19 6 10.4529 6.1403 -0.2212 20 7 11.5722 5.4498 -0.2210 21 14 10.5021 7.9990 -0.4021 22 1 9.1180 8.5359 -0.3726 23 1 11.2838 8.5846 0.7165 24 1 11.1438 8.3538 -1.6935 25 6 7.0874 4.0478 1.2330 26 6 5.6628 3.4881 1.2387 27 7 3.3768 2.1604 0.0031 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3632 -1.0276 -0.0005 31 1 -0.8124 4.4263 0.0028 32 1 -0.3731 6.8250 0.0023 33 1 1.9282 7.6836 0.0001 34 1 3.8309 6.1549 -0.0005 35 1 5.7373 2.2806 -1.1382 36 1 5.1828 3.6824 -2.0855 37 1 7.0878 5.0161 -1.2521 38 1 7.6691 3.5291 -2.0397 39 1 9.6796 3.7060 0.9941 40 1 9.7348 3.5329 -0.7766 41 1 12.4233 5.9056 -0.3145 42 1 7.0502 5.1364 1.1926 43 1 7.6047 3.7347 2.1399 44 1 5.1184 3.8880 2.0940 45 1 5.6993 2.4009 1.3066 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001165055460.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:21:58 Heat of formation + Delta-G solvation = 90.131537 kcal Electronic energy + Delta-G solvation = -27600.133441 eV Core-core repulsion = 23937.144974 eV Total energy + Delta-G solvation = -3662.988466 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 344.137 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.54263 -39.00577 -37.68495 -35.80257 -33.25127 -32.22924 -31.51408 -30.51652 -30.49274 -29.05824 -27.81402 -25.44588 -24.68856 -24.02060 -23.10650 -22.17209 -21.45969 -19.51874 -19.12709 -18.25155 -17.27394 -16.63585 -16.21553 -15.62555 -15.45453 -14.94040 -14.84351 -14.52426 -14.35177 -14.26877 -14.24030 -14.01873 -13.68928 -13.22882 -13.04207 -12.87198 -12.66472 -12.53751 -12.04811 -11.95670 -11.89912 -11.39535 -11.24363 -11.05680 -10.91029 -10.70300 -10.66826 -10.56965 -10.53985 -10.17954 -9.90307 -9.67729 -9.64152 -9.44430 -8.79985 -8.65836 -8.46072 -7.82063 -7.22900 -6.05197 -4.14432 -0.01922 0.51699 1.05381 1.67353 1.93353 2.68794 3.24706 3.33238 3.36185 3.41657 3.81250 4.01842 4.34449 4.38477 4.57565 4.70599 4.74677 4.89665 4.94517 4.94720 5.00359 5.15466 5.25274 5.36301 5.47408 5.47653 5.55397 5.63274 5.73584 5.85681 5.90272 5.94586 5.98683 6.07206 6.14153 6.21917 6.46948 6.53481 6.66511 6.76078 6.84811 6.89680 7.15382 7.23912 7.50186 7.73986 7.87293 7.99021 8.21680 8.25921 8.96070 9.52730 10.99996 Molecular weight = 344.14amu Principal moments of inertia in cm(-1) A = 0.014439 B = 0.003016 C = 0.002573 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1938.682525 B = 9281.580309 C =10878.333620 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 S 0.000 6.000 3 C 0.317 3.683 4 N -0.529 5.529 5 C 0.178 3.822 6 C -0.119 4.119 7 C -0.070 4.070 8 C -0.140 4.140 9 C -0.040 4.040 10 C -0.150 4.150 11 C 0.422 3.578 12 N -0.489 5.489 13 C 0.064 3.936 14 C 0.067 3.933 15 N -0.542 5.542 16 C 0.187 3.813 17 C -0.549 4.549 18 H 0.060 0.940 19 C 0.065 3.935 20 N -0.890 5.890 21 Si 0.888 3.112 22 H -0.273 1.273 23 H -0.284 1.284 24 H -0.284 1.284 25 C 0.066 3.934 26 C 0.065 3.935 27 N -0.540 5.540 28 H 0.089 0.911 29 H 0.089 0.911 30 H 0.104 0.896 31 H 0.136 0.864 32 H 0.132 0.868 33 H 0.132 0.868 34 H 0.147 0.853 35 H 0.058 0.942 36 H 0.069 0.931 37 H 0.052 0.948 38 H 0.076 0.924 39 H 0.028 0.972 40 H 0.036 0.964 41 H 0.262 0.738 42 H 0.050 0.950 43 H 0.075 0.925 44 H 0.070 0.930 45 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.409 -3.950 0.546 24.732 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.313 4.313 2 S 0.234 5.766 3 C -0.061 4.061 4 N -0.249 5.249 5 C 0.048 3.952 6 C -0.138 4.138 7 C -0.091 4.091 8 C -0.159 4.159 9 C -0.060 4.060 10 C -0.158 4.158 11 C 0.169 3.831 12 N -0.213 5.213 13 C -0.063 4.063 14 C -0.062 4.062 15 N -0.267 5.267 16 C 0.062 3.938 17 C -0.588 4.588 18 H 0.078 0.922 19 C -0.138 4.138 20 N -0.529 5.529 21 Si 0.716 3.284 22 H -0.198 1.198 23 H -0.210 1.210 24 H -0.210 1.210 25 C -0.063 4.063 26 C -0.061 4.061 27 N -0.259 5.259 28 H 0.108 0.892 29 H 0.108 0.892 30 H 0.123 0.877 31 H 0.154 0.846 32 H 0.150 0.850 33 H 0.150 0.850 34 H 0.165 0.835 35 H 0.076 0.924 36 H 0.088 0.912 37 H 0.071 0.929 38 H 0.094 0.906 39 H 0.047 0.953 40 H 0.054 0.946 41 H 0.072 0.928 42 H 0.068 0.932 43 H 0.093 0.907 44 H 0.088 0.912 45 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -23.778 -6.012 0.541 24.532 hybrid contribution -0.458 3.167 -0.130 3.203 sum -24.236 -2.845 0.412 24.406 Atomic orbital electron populations 1.23541 0.94502 1.06113 1.07126 1.85912 1.06369 0.94022 1.90248 1.24651 0.86650 1.00283 0.94504 1.69128 1.32967 1.03043 1.19797 1.18844 0.91898 0.89955 0.94501 1.20600 0.97972 0.92062 1.03215 1.21052 0.97386 0.95128 0.95524 1.21042 0.92280 1.00590 1.02007 1.21111 1.00743 0.90871 0.93310 1.19201 0.93399 0.95946 1.07303 1.20562 0.91938 0.86171 0.84423 1.60161 0.97777 1.57433 1.05968 1.22368 0.94886 0.99122 0.89880 1.21926 0.90487 0.99523 0.94216 1.62697 1.04905 1.58502 1.00567 1.19747 0.82430 0.93616 0.98021 1.21786 0.92677 0.93482 1.50885 0.92228 1.24962 0.95686 0.98172 0.94953 1.69949 0.97599 1.35473 1.49886 0.86599 0.78095 0.85961 0.77723 1.19782 1.20995 1.20978 1.21942 0.90465 0.98710 0.95218 1.22354 0.95265 0.99923 0.88547 1.68579 1.21057 1.18364 1.17866 0.89197 0.89200 0.87749 0.84618 0.85043 0.85048 0.83482 0.92371 0.91212 0.92936 0.90605 0.95349 0.94600 0.92846 0.93156 0.90652 0.91171 0.92479 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.15 9.59 101.05 0.97 -0.18 16 2 S 0.00 0.00 22.88 -107.50 -2.46 -2.45 16 3 C 0.32 4.64 7.84 -90.87 -0.71 3.93 16 4 N -0.53 -7.34 9.07 -11.51 -0.10 -7.45 16 5 C 0.18 2.39 6.61 -84.86 -0.56 1.83 16 6 C -0.12 -1.22 10.01 -39.54 -0.40 -1.62 16 7 C -0.07 -0.60 9.95 -39.91 -0.40 -0.99 16 8 C -0.14 -1.33 9.96 -39.89 -0.40 -1.73 16 9 C -0.04 -0.48 9.58 -39.62 -0.38 -0.86 16 10 C -0.15 -2.11 5.76 -106.65 -0.61 -2.73 16 11 C 0.42 6.56 5.37 -155.07 -0.83 5.72 16 12 N -0.49 -7.77 3.94 -172.52 -0.68 -8.45 16 13 C 0.06 1.05 5.42 -3.76 -0.02 1.03 16 14 C 0.07 1.28 5.24 -3.77 -0.02 1.27 16 15 N -0.54 -11.34 4.92 -235.91 -1.16 -12.50 16 16 C 0.19 4.69 5.14 -4.98 -0.03 4.66 16 17 C -0.55 -14.59 7.66 -34.44 -0.26 -14.86 16 18 H 0.06 1.57 5.82 -52.48 -0.31 1.27 16 19 C 0.06 1.78 5.46 -17.82 -0.10 1.69 16 20 N -0.89 -25.76 13.29 55.43 0.74 -25.03 16 21 Si 0.89 20.98 29.54 -169.99 -5.02 15.96 16 22 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 23 H -0.28 -6.69 7.11 56.52 0.40 -6.28 16 24 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 25 C 0.07 1.23 5.32 -3.77 -0.02 1.21 16 26 C 0.07 1.06 5.47 -3.77 -0.02 1.04 16 27 N -0.54 -8.68 9.72 -12.39 -0.12 -8.80 16 28 H 0.09 0.74 8.10 -51.92 -0.42 0.32 16 29 H 0.09 0.74 8.10 -51.92 -0.42 0.32 16 30 H 0.10 0.58 8.14 -51.92 -0.42 0.15 16 31 H 0.14 1.15 8.06 -52.48 -0.42 0.72 16 32 H 0.13 0.71 8.06 -52.48 -0.42 0.29 16 33 H 0.13 0.94 8.06 -52.49 -0.42 0.52 16 34 H 0.15 1.81 7.65 -52.48 -0.40 1.41 16 35 H 0.06 1.01 7.94 -51.93 -0.41 0.60 16 36 H 0.07 1.06 8.13 -51.93 -0.42 0.64 16 37 H 0.05 1.08 6.62 -51.93 -0.34 0.74 16 38 H 0.08 1.45 8.14 -51.93 -0.42 1.02 16 39 H 0.03 0.76 8.12 -51.92 -0.42 0.34 16 40 H 0.04 0.97 8.14 -51.93 -0.42 0.55 16 41 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 42 H 0.05 1.02 6.78 -51.93 -0.35 0.67 16 43 H 0.08 1.39 8.12 -51.93 -0.42 0.97 16 44 H 0.07 1.04 8.13 -51.93 -0.42 0.62 16 45 H 0.06 0.98 8.03 -51.93 -0.42 0.56 16 LS Contribution 377.46 15.07 5.69 5.69 Total: -1.00 -30.24 377.46 -13.34 -43.57 By element: Atomic # 1 Polarization: 6.49 SS G_CDS: -6.43 Total: 0.05 kcal Atomic # 6 Polarization: 3.20 SS G_CDS: -3.79 Total: -0.59 kcal Atomic # 7 Polarization: -60.90 SS G_CDS: -1.33 Total: -62.23 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -5.02 Total: 15.96 kcal Atomic # 16 Polarization: 0.00 SS G_CDS: -2.46 Total: -2.45 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -30.24 -13.34 -43.57 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001165055460.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.706 kcal (2) G-P(sol) polarization free energy of solvation -30.235 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 103.471 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -13.339 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.575 kcal (6) G-S(sol) free energy of system = (1) + (5) 90.132 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds