Wall clock time and date at job start Wed Apr 1 2020 02:05:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35999 * 116.99794 * 2 1 4 4 C 1.38669 * 120.04577 * 0.02562 * 3 2 1 5 5 C 1.38231 * 120.08657 * 180.02562 * 4 3 2 6 6 C 1.50700 * 119.90761 * 179.97438 * 5 4 3 7 7 N 1.46502 * 109.47056 * 90.00205 * 6 5 4 8 8 C 1.32211 * 120.00025 * 114.68478 * 7 6 5 9 9 C 1.46923 * 120.83249 * 353.34560 * 8 7 6 10 10 C 1.34372 * 119.36787 * 180.25079 * 9 8 7 11 11 N 1.36430 * 121.22095 * 359.44669 * 10 9 8 12 12 H 0.96991 * 119.08797 * 180.28930 * 11 10 9 13 13 C 1.37773 * 121.81793 * 0.56650 * 11 10 9 14 14 C 1.40185 * 119.73999 * 179.70181 * 13 11 10 15 15 H 1.07999 * 119.99431 * 160.67960 * 14 13 11 16 16 C 1.40348 * 119.99939 * 340.67564 * 14 13 11 17 17 N 1.30587 * 120.00357 * 327.95168 * 16 14 13 18 18 Si 1.86799 * 119.99585 * 147.95408 * 16 14 13 19 19 H 1.48499 * 109.47147 * 84.99942 * 18 16 14 20 20 H 1.48499 * 109.47018 * 204.99384 * 18 16 14 21 21 H 1.48496 * 109.47426 * 324.99440 * 18 16 14 22 22 C 1.39058 * 120.51416 * 359.72624 * 13 11 10 23 23 C 1.38226 * 120.18420 * 0.25627 * 5 4 3 24 24 C 1.38670 * 120.08390 * 359.45083 * 23 5 4 25 25 O 1.36004 * 120.04279 * 180.29788 * 24 23 5 26 26 C 1.42898 * 116.99798 * 0.26967 * 25 24 23 27 27 C 1.38982 * 119.91319 * 0.56540 * 24 23 5 28 28 O 1.36088 * 120.09002 * 179.68659 * 27 24 23 29 29 C 1.42901 * 117.00163 * 270.02459 * 28 27 24 30 30 H 1.08997 * 109.46587 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.46773 * 299.99149 * 1 2 3 32 32 H 1.09000 * 109.47546 * 59.99616 * 1 2 3 33 33 H 1.07995 * 119.95296 * 0.02562 * 4 3 2 34 34 H 1.09001 * 109.47554 * 330.00376 * 6 5 4 35 35 H 1.08995 * 109.47648 * 210.00442 * 6 5 4 36 36 H 1.07997 * 120.31063 * 359.97438 * 9 8 7 37 37 H 1.07993 * 119.38910 * 179.72127 * 10 9 8 38 38 H 0.96995 * 119.99976 * 179.97438 * 17 16 14 39 39 H 1.07999 * 120.63003 * 180.02562 * 22 13 11 40 40 H 1.07995 * 119.95907 * 179.72574 * 23 5 4 41 41 H 1.08999 * 109.46880 * 60.00403 * 26 25 24 42 42 H 1.09002 * 109.46404 * 179.97438 * 26 25 24 43 43 H 1.08993 * 109.47026 * 299.99735 * 26 25 24 44 44 H 1.08996 * 109.47254 * 59.99376 * 29 28 27 45 45 H 1.08998 * 109.47125 * 180.02562 * 29 28 27 46 46 H 1.09010 * 109.46571 * 300.00175 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2118 0.0000 4 6 1.2920 2.3753 0.0005 5 6 1.9186 3.6075 0.0000 6 6 1.0949 4.8694 0.0000 7 7 0.8285 5.2787 1.3812 8 6 1.3330 6.4095 1.8446 9 6 2.2791 7.1966 1.0421 10 6 2.7776 8.3391 1.5440 11 7 2.4130 8.7870 2.7800 12 1 2.7887 9.6180 3.1102 13 6 1.5300 8.0887 3.5744 14 6 1.1903 8.5861 4.8402 15 1 0.2942 8.2399 5.3336 16 6 2.0148 9.5338 5.4662 17 7 3.3045 9.5133 5.2627 18 14 1.2671 10.8246 6.5906 19 1 1.1162 10.2632 7.9571 20 1 2.1558 12.0133 6.6392 21 1 -0.0650 11.2234 6.0694 22 6 0.9737 6.8941 3.1304 23 6 3.2987 3.6853 -0.0064 24 6 4.0603 2.5264 -0.0008 25 8 5.4181 2.6040 -0.0010 26 6 5.9931 3.9122 -0.0012 27 6 3.4342 1.2856 -0.0007 28 8 4.1781 0.1461 -0.0017 29 6 4.5321 -0.3965 -1.2754 30 1 -0.3632 -1.0277 0.0005 31 1 -0.3633 0.5137 0.8901 32 1 -0.3634 0.5139 -0.8899 33 1 0.2135 2.3187 0.0014 34 1 0.1508 4.6871 -0.5134 35 1 1.6412 5.6600 -0.5143 36 1 2.5744 6.8579 0.0601 37 1 3.4765 8.9156 0.9563 38 1 3.8742 10.1685 5.6950 39 1 0.2811 6.3454 3.7514 40 1 3.7845 4.6498 -0.0113 41 1 5.6691 4.4515 0.8889 42 1 7.0801 3.8312 -0.0009 43 1 5.6689 4.4515 -0.8911 44 1 5.1169 0.3355 -1.8323 45 1 5.1225 -1.3017 -1.1333 46 1 3.6264 -0.6375 -1.8320 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001168674000.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:05:54 Heat of formation + Delta-G solvation = -42.636029 kcal Electronic energy + Delta-G solvation = -29561.194673 eV Core-core repulsion = 25417.403351 eV Total energy + Delta-G solvation = -4143.791322 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.157 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.55079 -38.82206 -38.65973 -37.55969 -36.65401 -34.69855 -33.60694 -31.05411 -30.64018 -29.39628 -28.69653 -27.69965 -27.01381 -26.91832 -25.97933 -24.17535 -21.85376 -21.65953 -21.35137 -20.14300 -18.26113 -18.01150 -17.05895 -16.95501 -16.75070 -16.31607 -16.06520 -15.52893 -15.38688 -15.01565 -14.86123 -14.59336 -14.45772 -14.38375 -14.05856 -13.76797 -13.13512 -13.04280 -12.85621 -12.52917 -12.35847 -12.13397 -12.03623 -11.77848 -11.68047 -11.43853 -11.40110 -11.23881 -11.11369 -11.06658 -10.78521 -10.73113 -10.40785 -10.19795 -9.77303 -9.62291 -9.49644 -8.38075 -8.05896 -7.90426 -7.50620 -7.41336 -6.08887 -4.79100 1.48769 1.64821 2.52664 2.64203 2.82216 2.85255 2.97749 3.11564 3.57588 3.72333 3.78091 4.11600 4.18142 4.43061 5.02875 5.09453 5.20504 5.24156 5.26281 5.27314 5.35995 5.37734 5.45764 5.47288 5.48042 5.50429 5.57248 5.60968 5.68496 5.83275 5.92506 6.17580 6.35880 6.42457 6.43764 6.53086 6.59787 6.66291 6.70437 6.72471 7.01731 7.22683 7.32225 7.42368 7.58970 7.68870 7.91417 7.92157 8.15580 8.18272 8.69952 8.82526 9.52521 9.65937 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.015719 B = 0.002515 C = 0.002344 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1780.801170 B =11132.608179 C =11941.693188 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.308 6.308 3 C 0.145 3.855 4 C -0.220 4.220 5 C 0.022 3.978 6 C 0.093 3.907 7 N -0.664 5.664 8 C 0.287 3.713 9 C -0.301 4.301 10 C 0.127 3.873 11 N -0.609 5.609 12 H 0.407 0.593 13 C 0.330 3.670 14 C -0.471 4.471 15 H 0.107 0.893 16 C 0.084 3.916 17 N -0.781 5.781 18 Si 0.910 3.090 19 H -0.262 1.262 20 H -0.273 1.273 21 H -0.254 1.254 22 C -0.364 4.364 23 C -0.227 4.227 24 C 0.147 3.853 25 O -0.308 6.308 26 C 0.026 3.974 27 C 0.009 3.991 28 O -0.313 6.313 29 C 0.036 3.964 30 H 0.097 0.903 31 H 0.060 0.940 32 H 0.054 0.946 33 H 0.132 0.868 34 H 0.056 0.944 35 H 0.038 0.962 36 H 0.116 0.884 37 H 0.131 0.869 38 H 0.293 0.707 39 H 0.113 0.887 40 H 0.130 0.870 41 H 0.060 0.940 42 H 0.098 0.902 43 H 0.054 0.946 44 H 0.040 0.960 45 H 0.086 0.914 46 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.856 -5.121 -10.010 11.600 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.221 6.221 3 C 0.099 3.901 4 C -0.239 4.239 5 C 0.021 3.979 6 C -0.038 4.038 7 N -0.391 5.391 8 C 0.126 3.874 9 C -0.332 4.332 10 C -0.002 4.002 11 N -0.218 5.218 12 H 0.243 0.757 13 C 0.222 3.778 14 C -0.503 4.503 15 H 0.124 0.876 16 C -0.139 4.139 17 N -0.406 5.406 18 Si 0.733 3.267 19 H -0.186 1.186 20 H -0.198 1.198 21 H -0.178 1.178 22 C -0.393 4.393 23 C -0.247 4.247 24 C 0.101 3.899 25 O -0.221 6.221 26 C -0.069 4.069 27 C -0.036 4.036 28 O -0.229 6.229 29 C -0.059 4.059 30 H 0.116 0.884 31 H 0.078 0.922 32 H 0.073 0.927 33 H 0.150 0.850 34 H 0.075 0.925 35 H 0.056 0.944 36 H 0.134 0.866 37 H 0.148 0.852 38 H 0.104 0.896 39 H 0.131 0.869 40 H 0.147 0.853 41 H 0.079 0.921 42 H 0.116 0.884 43 H 0.073 0.927 44 H 0.059 0.941 45 H 0.105 0.895 46 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 2.818 -6.299 -9.668 11.878 hybrid contribution 0.406 1.905 -0.120 1.951 sum 3.225 -4.394 -9.788 11.203 Atomic orbital electron populations 1.23079 0.78434 1.03548 1.01825 1.86087 1.21220 1.26283 1.88533 1.18934 0.90489 0.84810 0.95880 1.20922 1.00092 0.90890 1.12028 1.19975 0.92731 0.95629 0.89581 1.20852 0.95937 0.91649 0.95314 1.73616 1.37603 1.18306 1.09584 1.20273 0.86883 0.88232 0.92008 1.22284 1.08962 0.99624 1.02286 1.21195 0.96554 0.95815 0.86611 1.41812 1.42245 1.24128 1.13570 0.75653 1.17521 0.82982 0.88102 0.89202 1.19425 1.09566 1.20843 1.00437 0.87561 1.26237 0.93901 0.97350 0.96423 1.69696 1.04441 1.30238 1.36219 0.86262 0.80817 0.79219 0.80445 1.18618 1.19818 1.17754 1.20083 1.19726 1.00233 0.99210 1.20963 0.94366 0.96871 1.12496 1.18919 0.82631 0.92669 0.95692 1.86085 1.16959 1.30553 1.88470 1.23086 0.98787 0.83187 1.01838 1.16808 0.86266 0.84358 1.16160 1.86165 1.70229 1.38234 1.28245 1.22919 0.99199 0.98188 0.85605 0.88447 0.92169 0.92698 0.84987 0.92534 0.94415 0.86619 0.85183 0.89566 0.86921 0.85260 0.92131 0.88361 0.92742 0.94098 0.89524 0.94101 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.30 9.81 101.05 0.99 1.29 16 2 O -0.31 -4.83 10.28 -34.32 -0.35 -5.18 16 3 C 0.14 2.53 6.70 -39.15 -0.26 2.27 16 4 C -0.22 -3.86 8.69 -39.42 -0.34 -4.20 16 5 C 0.02 0.42 5.46 -104.63 -0.57 -0.15 16 6 C 0.09 1.84 6.35 -5.19 -0.03 1.81 16 7 N -0.66 -15.82 10.60 -58.41 -0.62 -16.44 16 8 C 0.29 6.87 6.80 -82.74 -0.56 6.31 16 9 C -0.30 -6.12 9.34 -37.43 -0.35 -6.47 16 10 C 0.13 2.36 11.15 -16.87 -0.19 2.17 16 11 N -0.61 -12.59 4.96 -10.83 -0.05 -12.65 16 12 H 0.41 7.91 6.68 -40.82 -0.27 7.64 16 13 C 0.33 7.80 6.38 -84.16 -0.54 7.27 16 14 C -0.47 -10.86 8.93 -38.06 -0.34 -11.20 16 15 H 0.11 2.42 8.02 -52.49 -0.42 2.00 16 16 C 0.08 1.75 4.84 -17.29 -0.08 1.66 16 17 N -0.78 -16.49 11.85 55.57 0.66 -15.83 16 18 Si 0.91 15.59 29.66 -169.99 -5.04 10.55 16 19 H -0.26 -4.55 7.11 56.52 0.40 -4.15 16 20 H -0.27 -4.52 7.11 56.52 0.40 -4.12 16 21 H -0.25 -4.41 7.11 56.52 0.40 -4.01 16 22 C -0.36 -9.13 9.83 -37.83 -0.37 -9.50 16 23 C -0.23 -4.10 8.68 -39.43 -0.34 -4.44 16 24 C 0.15 2.63 6.70 -39.15 -0.26 2.37 16 25 O -0.31 -5.02 10.28 -34.34 -0.35 -5.37 16 26 C 0.03 0.32 9.81 101.05 0.99 1.31 16 27 C 0.01 0.17 5.75 -39.03 -0.22 -0.05 16 28 O -0.31 -5.48 9.98 -45.27 -0.45 -5.94 16 29 C 0.04 0.47 11.13 101.05 1.13 1.59 16 30 H 0.10 0.82 8.14 -51.93 -0.42 0.40 16 31 H 0.06 0.69 7.66 -51.93 -0.40 0.30 16 32 H 0.05 0.55 7.66 -51.93 -0.40 0.15 16 33 H 0.13 2.11 6.29 -52.49 -0.33 1.78 16 34 H 0.06 1.06 8.08 -51.93 -0.42 0.64 16 35 H 0.04 0.71 5.26 -51.93 -0.27 0.44 16 36 H 0.12 2.10 6.00 -52.49 -0.31 1.79 16 37 H 0.13 1.82 8.06 -52.49 -0.42 1.39 16 38 H 0.29 5.51 8.29 -40.82 -0.34 5.17 16 39 H 0.11 2.93 8.06 -52.49 -0.42 2.51 16 40 H 0.13 2.20 6.29 -52.49 -0.33 1.87 16 41 H 0.06 0.80 7.67 -51.93 -0.40 0.40 16 42 H 0.10 0.93 8.14 -51.93 -0.42 0.51 16 43 H 0.05 0.60 7.65 -51.93 -0.40 0.20 16 44 H 0.04 0.51 8.14 -51.93 -0.42 0.08 16 45 H 0.09 0.91 8.14 -51.93 -0.42 0.48 16 46 H 0.04 0.50 8.14 -51.92 -0.42 0.08 16 LS Contribution 387.66 15.07 5.84 5.84 Total: -1.00 -29.67 387.66 -7.78 -37.45 By element: Atomic # 1 Polarization: 21.58 SS G_CDS: -6.05 Total: 15.54 kcal Atomic # 6 Polarization: -6.61 SS G_CDS: -1.36 Total: -7.97 kcal Atomic # 7 Polarization: -44.90 SS G_CDS: -0.01 Total: -44.92 kcal Atomic # 8 Polarization: -15.33 SS G_CDS: -1.16 Total: -16.49 kcal Atomic # 14 Polarization: 15.59 SS G_CDS: -5.04 Total: 10.55 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -29.67 -7.78 -37.45 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168674000.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.183 kcal (2) G-P(sol) polarization free energy of solvation -29.673 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.856 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.780 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.453 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.636 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds