Wall clock time and date at job start Wed Apr 1 2020 02:43:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31407 * 1 3 3 Si 1.86801 * 120.00255 * 2 1 4 4 H 1.48500 * 109.47107 * 239.99850 * 3 2 1 5 5 H 1.48502 * 109.46898 * 359.97438 * 3 2 1 6 6 H 1.48493 * 109.47547 * 119.99618 * 3 2 1 7 7 C 1.38951 * 119.99883 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99702 * 180.02562 * 7 2 1 9 9 N 1.37087 * 120.00135 * 0.02562 * 7 2 1 10 10 C 1.34778 * 120.00288 * 180.02562 * 9 7 2 11 11 O 1.21290 * 119.99867 * 359.97438 * 10 9 7 12 12 C 1.50700 * 120.00018 * 179.97438 * 10 9 7 13 13 N 1.46906 * 109.46928 * 179.97438 * 12 10 9 14 14 C 1.46896 * 110.99934 * 180.02562 * 13 12 10 15 15 C 1.53005 * 109.47274 * 179.97438 * 14 13 12 16 16 C 1.52999 * 109.46968 * 179.97438 * 15 14 13 17 17 N 1.46503 * 109.46596 * 180.02562 * 16 15 14 18 18 C 1.34773 * 119.99832 * 180.02562 * 17 16 15 19 19 O 1.21650 * 120.00336 * 359.97438 * 18 17 16 20 20 C 1.47058 * 120.00161 * 179.97438 * 18 17 16 21 21 C 1.35868 * 125.43088 * 180.02562 * 20 18 17 22 22 C 1.41590 * 107.72568 * 179.97438 * 21 20 18 23 23 C 1.40105 * 133.37815 * 179.97438 * 22 21 20 24 24 C 1.36434 * 119.83013 * 180.02562 * 23 22 21 25 25 C 1.38938 * 120.61619 * 359.97352 * 24 23 22 26 26 C 1.37667 * 120.65240 * 0.04007 * 25 24 23 27 27 C 1.39235 * 119.80608 * 359.97085 * 26 25 24 28 28 N 1.37478 * 133.17921 * 179.97438 * 27 26 25 29 29 H 0.96998 * 125.60983 * 0.03169 * 28 27 26 30 30 H 0.97003 * 119.99796 * 0.02562 * 1 2 3 31 31 H 0.97009 * 119.99923 * 359.97438 * 9 7 2 32 32 H 1.09007 * 109.47173 * 59.99897 * 12 10 9 33 33 H 1.08999 * 109.47475 * 299.99726 * 12 10 9 34 34 H 1.00899 * 110.99950 * 303.95315 * 13 12 10 35 35 H 1.08998 * 109.47480 * 60.00059 * 14 13 12 36 36 H 1.08999 * 109.47490 * 300.00038 * 14 13 12 37 37 H 1.09007 * 109.46590 * 59.99975 * 15 14 13 38 38 H 1.08999 * 109.46970 * 300.00451 * 15 14 13 39 39 H 1.08996 * 109.47105 * 60.00179 * 16 15 14 40 40 H 1.09004 * 109.47007 * 299.99858 * 16 15 14 41 41 H 0.96999 * 120.00560 * 359.97438 * 17 16 15 42 42 H 1.07999 * 126.13952 * 359.95209 * 21 20 18 43 43 H 1.07997 * 120.08011 * 0.06538 * 23 22 21 44 44 H 1.08005 * 119.69346 * 179.97438 * 24 23 22 45 45 H 1.08005 * 119.67604 * 180.02562 * 25 24 23 46 46 H 1.08004 * 120.09847 * 180.25294 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.1019 1.6963 -1.2125 5 1 1.2831 2.7464 -0.0006 6 1 3.1018 1.6965 1.2125 7 6 2.0088 -1.2034 0.0005 8 1 3.0888 -1.2033 0.0010 9 7 1.3234 -2.3906 0.0005 10 6 1.9972 -3.5578 0.0016 11 8 3.2101 -3.5578 0.0021 12 6 1.2436 -4.8629 0.0022 13 7 2.1983 -5.9795 0.0027 14 6 1.4980 -7.2708 0.0026 15 6 2.5229 -8.4068 0.0025 16 6 1.7934 -9.7517 0.0031 17 7 2.7748 -10.8395 0.0036 18 6 2.3596 -12.1216 0.0037 19 8 1.1699 -12.3758 0.0038 20 6 3.3446 -13.2135 0.0036 21 6 3.0503 -14.5399 0.0032 22 6 4.2735 -15.2530 0.0027 23 6 4.5920 -16.6174 0.0026 24 6 5.8988 -17.0093 0.0025 25 6 6.9200 -16.0672 0.0021 26 6 6.6328 -14.7208 0.0025 27 6 5.3069 -14.2959 0.0027 28 7 4.7169 -13.0542 0.0036 29 1 5.1868 -12.2056 0.0037 30 1 -0.4850 0.8401 -0.0004 31 1 0.3533 -2.3906 0.0005 32 1 0.6173 -4.9212 -0.8881 33 1 0.6167 -4.9201 0.8919 34 1 2.8331 -5.9128 -0.7787 35 1 0.8734 -7.3454 -0.8875 36 1 0.8727 -7.3451 0.8924 37 1 3.1478 -8.3324 0.8925 38 1 3.1477 -8.3323 -0.8875 39 1 1.1682 -9.8263 -0.8866 40 1 1.1688 -9.8259 0.8934 41 1 3.7234 -10.6369 0.0032 42 1 2.0608 -14.9728 0.0035 43 1 3.8049 -17.3569 0.0018 44 1 6.1418 -18.0616 0.0029 45 1 7.9493 -16.3943 0.0017 46 1 7.4337 -13.9962 -0.0020 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001175558079.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:43:53 Heat of formation + Delta-G solvation = -19.077827 kcal Electronic energy + Delta-G solvation = -26969.034480 eV Core-core repulsion = 22858.557469 eV Total energy + Delta-G solvation = -4110.477011 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.164 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.03004 -39.80870 -38.35319 -37.24597 -36.64697 -35.04257 -33.88107 -32.63955 -31.74168 -31.19226 -29.93714 -29.42765 -27.27834 -25.30861 -24.10264 -22.99355 -22.61661 -21.84255 -21.58316 -20.45268 -19.28832 -18.83701 -17.90623 -17.58243 -16.68594 -16.41563 -16.16788 -15.85481 -15.64193 -15.18052 -15.00194 -14.61297 -14.54729 -14.35411 -14.23224 -14.17783 -13.90394 -13.55217 -13.45243 -13.32029 -12.96262 -12.20285 -12.16822 -12.05201 -11.91775 -11.88984 -11.50830 -11.48516 -11.39135 -11.12791 -10.99147 -10.58645 -10.45985 -10.36597 -10.23448 -9.58271 -9.52404 -8.72440 -8.51062 -8.25719 -8.12117 -7.98597 -6.43771 -3.84824 0.30526 1.15457 1.66596 2.38857 2.61912 2.91788 3.18430 3.24406 3.28614 3.44876 3.87967 4.03473 4.18075 4.24456 4.25110 4.55395 4.64820 4.71458 4.82333 4.84374 4.95073 4.95404 5.05141 5.12279 5.23066 5.25466 5.34635 5.40116 5.49040 5.54183 5.57309 5.74164 5.81901 5.91902 5.92949 5.95368 5.99740 6.05396 6.16342 6.20639 6.23601 6.58963 6.82803 7.00832 7.13712 7.52841 7.58709 7.66181 8.03597 8.58804 9.15404 9.51755 10.03070 10.73840 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.030465 B = 0.001245 C = 0.001198 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 918.853611 B =22480.164523 C =23365.937095 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.023 3.977 3 Si 0.931 3.069 4 H -0.274 1.274 5 H -0.284 1.284 6 H -0.273 1.273 7 C -0.302 4.302 8 H 0.102 0.898 9 N -0.562 5.562 10 C 0.440 3.560 11 O -0.585 6.585 12 C 0.051 3.949 13 N -0.669 5.669 14 C 0.062 3.938 15 C -0.130 4.130 16 C 0.120 3.880 17 N -0.726 5.726 18 C 0.583 3.417 19 O -0.520 6.520 20 C 0.015 3.985 21 C -0.104 4.104 22 C -0.121 4.121 23 C -0.060 4.060 24 C -0.150 4.150 25 C -0.087 4.087 26 C -0.133 4.133 27 C 0.114 3.886 28 N -0.579 5.579 29 H 0.418 0.582 30 H 0.272 0.728 31 H 0.393 0.607 32 H 0.044 0.956 33 H 0.087 0.913 34 H 0.349 0.651 35 H 0.030 0.970 36 H 0.075 0.925 37 H 0.081 0.919 38 H 0.069 0.931 39 H 0.072 0.928 40 H 0.075 0.925 41 H 0.397 0.603 42 H 0.157 0.843 43 H 0.126 0.874 44 H 0.124 0.876 45 H 0.128 0.872 46 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.034 -32.372 -0.884 33.366 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.178 4.178 3 Si 0.758 3.242 4 H -0.199 1.199 5 H -0.209 1.209 6 H -0.199 1.199 7 C -0.431 4.431 8 H 0.120 0.880 9 N -0.199 5.199 10 C 0.225 3.775 11 O -0.469 6.469 12 C -0.082 4.082 13 N -0.302 5.302 14 C -0.068 4.068 15 C -0.168 4.168 16 C -0.003 4.003 17 N -0.377 5.377 18 C 0.369 3.631 19 O -0.395 6.395 20 C -0.094 4.094 21 C -0.131 4.131 22 C -0.126 4.126 23 C -0.079 4.079 24 C -0.169 4.169 25 C -0.107 4.107 26 C -0.154 4.154 27 C 0.004 3.996 28 N -0.184 5.184 29 H 0.256 0.744 30 H 0.082 0.918 31 H 0.226 0.774 32 H 0.062 0.938 33 H 0.105 0.895 34 H 0.168 0.832 35 H 0.049 0.951 36 H 0.093 0.907 37 H 0.099 0.901 38 H 0.088 0.912 39 H 0.091 0.909 40 H 0.093 0.907 41 H 0.231 0.769 42 H 0.174 0.826 43 H 0.144 0.856 44 H 0.142 0.858 45 H 0.145 0.855 46 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 7.901 -32.155 -0.202 33.112 hybrid contribution 0.179 1.453 -0.896 1.717 sum 8.080 -30.702 -1.098 31.766 Atomic orbital electron populations 1.69602 1.05951 1.28310 1.50385 1.25261 0.95627 0.99724 0.97223 0.85914 0.78771 0.80435 0.79076 1.19919 1.20943 1.19865 1.19659 0.93359 0.82262 1.47845 0.87972 1.41855 1.09216 1.04591 1.64222 1.19801 0.88381 0.84733 0.84588 1.90515 1.13774 1.87079 1.55560 1.21674 0.94322 0.90887 1.01322 1.60057 1.18944 0.99895 1.51289 1.21821 0.95264 0.88744 1.00954 1.21758 0.99080 0.92308 1.03676 1.21417 0.91119 0.84679 1.03092 1.45905 1.10555 1.05690 1.75558 1.17186 0.87441 0.81590 0.76919 1.90873 1.15656 1.83465 1.49528 1.20144 0.82069 0.95320 1.11878 1.20945 0.98316 0.90404 1.03470 1.18226 0.92500 0.93511 1.08333 1.20439 0.96770 0.93348 0.97301 1.20669 0.92488 0.99699 1.04029 1.20915 0.99489 0.91843 0.98413 1.20109 0.92402 0.96512 1.06368 1.18347 0.94278 0.84245 1.02754 1.41933 1.05001 1.07210 1.64221 0.74396 0.91782 0.77425 0.93780 0.89506 0.83214 0.95135 0.90656 0.90080 0.91222 0.90923 0.90689 0.76939 0.82560 0.85628 0.85772 0.85456 0.85857 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.41 13.05 55.50 0.72 -23.69 16 2 C 0.02 0.62 5.50 -17.47 -0.10 0.53 16 3 Si 0.93 20.93 29.55 -169.99 -5.02 15.91 16 4 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 5 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 6 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 7 C -0.30 -8.39 9.68 -14.94 -0.14 -8.54 16 8 H 0.10 2.97 7.16 -52.49 -0.38 2.60 16 9 N -0.56 -14.19 5.29 -10.97 -0.06 -14.24 16 10 C 0.44 10.29 7.82 -10.98 -0.09 10.21 16 11 O -0.58 -15.75 15.78 5.55 0.09 -15.66 16 12 C 0.05 0.87 6.17 -4.97 -0.03 0.84 16 13 N -0.67 -10.25 6.13 -115.05 -0.70 -10.96 16 14 C 0.06 0.69 5.68 -3.82 -0.02 0.67 16 15 C -0.13 -1.11 5.59 -26.73 -0.15 -1.26 16 16 C 0.12 1.01 5.67 -4.04 -0.02 0.99 16 17 N -0.73 -5.58 5.55 -61.50 -0.34 -5.92 16 18 C 0.58 5.91 7.80 -12.69 -0.10 5.81 16 19 O -0.52 -7.11 16.84 5.23 0.09 -7.02 16 20 C 0.02 0.13 6.97 -82.29 -0.57 -0.44 16 21 C -0.10 -0.96 10.53 -39.15 -0.41 -1.37 16 22 C -0.12 -1.05 6.16 -106.93 -0.66 -1.71 16 23 C -0.06 -0.42 10.06 -39.53 -0.40 -0.82 16 24 C -0.15 -0.88 9.96 -39.97 -0.40 -1.28 16 25 C -0.09 -0.49 10.01 -39.53 -0.40 -0.89 16 26 C -0.13 -0.85 10.08 -39.42 -0.40 -1.24 16 27 C 0.11 0.90 7.25 -83.97 -0.61 0.29 16 28 N -0.58 -3.92 6.07 -7.35 -0.04 -3.97 16 29 H 0.42 1.62 8.12 -40.82 -0.33 1.29 16 30 H 0.27 6.99 8.31 -40.82 -0.34 6.65 16 31 H 0.39 9.45 7.90 -40.82 -0.32 9.13 16 32 H 0.04 0.69 8.14 -51.93 -0.42 0.26 16 33 H 0.09 1.39 8.14 -51.93 -0.42 0.97 16 34 H 0.35 5.46 8.43 -39.29 -0.33 5.13 16 35 H 0.03 0.32 8.14 -51.93 -0.42 -0.11 16 36 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 37 H 0.08 0.73 8.14 -51.93 -0.42 0.30 16 38 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 39 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 40 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 41 H 0.40 2.01 7.53 -40.82 -0.31 1.70 16 42 H 0.16 1.32 8.06 -52.49 -0.42 0.90 16 43 H 0.13 0.64 8.06 -52.49 -0.42 0.22 16 44 H 0.12 0.46 8.06 -52.48 -0.42 0.04 16 45 H 0.13 0.43 8.06 -52.48 -0.42 0.00 16 46 H 0.12 0.53 8.06 -52.48 -0.42 0.11 16 LS Contribution 397.39 15.07 5.99 5.99 Total: -1.00 -34.74 397.39 -10.08 -44.82 By element: Atomic # 1 Polarization: 19.26 SS G_CDS: -6.30 Total: 12.96 kcal Atomic # 6 Polarization: 6.28 SS G_CDS: -4.49 Total: 1.78 kcal Atomic # 7 Polarization: -58.35 SS G_CDS: -0.42 Total: -58.78 kcal Atomic # 8 Polarization: -22.85 SS G_CDS: 0.18 Total: -22.68 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -5.02 Total: 15.91 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -34.74 -10.08 -44.82 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001175558079.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.742 kcal (2) G-P(sol) polarization free energy of solvation -34.743 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.002 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.076 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.819 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.078 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds