Wall clock time and date at job start Wed Apr 1 2020 02:43:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31407 * 1 3 3 Si 1.86801 * 120.00255 * 2 1 4 4 H 1.48500 * 109.47107 * 239.99850 * 3 2 1 5 5 H 1.48502 * 109.46898 * 359.97438 * 3 2 1 6 6 H 1.48493 * 109.47547 * 119.99618 * 3 2 1 7 7 C 1.38951 * 119.99883 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99702 * 180.02562 * 7 2 1 9 9 N 1.37087 * 120.00135 * 0.02562 * 7 2 1 10 10 C 1.34778 * 120.00288 * 180.02562 * 9 7 2 11 11 O 1.21290 * 119.99867 * 359.97438 * 10 9 7 12 12 C 1.50700 * 120.00018 * 179.97438 * 10 9 7 13 13 N 1.46906 * 109.46928 * 179.97438 * 12 10 9 14 14 C 1.46896 * 110.99934 * 180.02562 * 13 12 10 15 15 C 1.53005 * 109.47274 * 179.97438 * 14 13 12 16 16 C 1.52999 * 109.46968 * 179.97438 * 15 14 13 17 17 N 1.46503 * 109.46596 * 180.02562 * 16 15 14 18 18 C 1.34773 * 119.99832 * 180.02562 * 17 16 15 19 19 O 1.21650 * 120.00336 * 359.97438 * 18 17 16 20 20 C 1.47058 * 120.00161 * 179.97438 * 18 17 16 21 21 C 1.35868 * 125.43088 * 180.02562 * 20 18 17 22 22 C 1.41590 * 107.72568 * 179.97438 * 21 20 18 23 23 C 1.40105 * 133.37815 * 179.97438 * 22 21 20 24 24 C 1.36434 * 119.83013 * 180.02562 * 23 22 21 25 25 C 1.38938 * 120.61619 * 359.97352 * 24 23 22 26 26 C 1.37667 * 120.65240 * 0.04007 * 25 24 23 27 27 C 1.39235 * 119.80608 * 359.97085 * 26 25 24 28 28 N 1.37478 * 133.17921 * 179.97438 * 27 26 25 29 29 H 0.96998 * 125.60983 * 0.03169 * 28 27 26 30 30 H 0.97003 * 119.99796 * 0.02562 * 1 2 3 31 31 H 0.97009 * 119.99923 * 359.97438 * 9 7 2 32 32 H 1.09007 * 109.47173 * 59.99897 * 12 10 9 33 33 H 1.08999 * 109.47475 * 299.99726 * 12 10 9 34 34 H 1.00899 * 110.99950 * 303.95315 * 13 12 10 35 35 H 1.08998 * 109.47480 * 60.00059 * 14 13 12 36 36 H 1.08999 * 109.47490 * 300.00038 * 14 13 12 37 37 H 1.09007 * 109.46590 * 59.99975 * 15 14 13 38 38 H 1.08999 * 109.46970 * 300.00451 * 15 14 13 39 39 H 1.08996 * 109.47105 * 60.00179 * 16 15 14 40 40 H 1.09004 * 109.47007 * 299.99858 * 16 15 14 41 41 H 0.96999 * 120.00560 * 359.97438 * 17 16 15 42 42 H 1.07999 * 126.13952 * 359.95209 * 21 20 18 43 43 H 1.07997 * 120.08011 * 0.06538 * 23 22 21 44 44 H 1.08005 * 119.69346 * 179.97438 * 24 23 22 45 45 H 1.08005 * 119.67604 * 180.02562 * 25 24 23 46 46 H 1.08004 * 120.09847 * 180.25294 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.1019 1.6963 -1.2125 5 1 1.2831 2.7464 -0.0006 6 1 3.1018 1.6965 1.2125 7 6 2.0088 -1.2034 0.0005 8 1 3.0888 -1.2033 0.0010 9 7 1.3234 -2.3906 0.0005 10 6 1.9972 -3.5578 0.0016 11 8 3.2101 -3.5578 0.0021 12 6 1.2436 -4.8629 0.0022 13 7 2.1983 -5.9795 0.0027 14 6 1.4980 -7.2708 0.0026 15 6 2.5229 -8.4068 0.0025 16 6 1.7934 -9.7517 0.0031 17 7 2.7748 -10.8395 0.0036 18 6 2.3596 -12.1216 0.0037 19 8 1.1699 -12.3758 0.0038 20 6 3.3446 -13.2135 0.0036 21 6 3.0503 -14.5399 0.0032 22 6 4.2735 -15.2530 0.0027 23 6 4.5920 -16.6174 0.0026 24 6 5.8988 -17.0093 0.0025 25 6 6.9200 -16.0672 0.0021 26 6 6.6328 -14.7208 0.0025 27 6 5.3069 -14.2959 0.0027 28 7 4.7169 -13.0542 0.0036 29 1 5.1868 -12.2056 0.0037 30 1 -0.4850 0.8401 -0.0004 31 1 0.3533 -2.3906 0.0005 32 1 0.6173 -4.9212 -0.8881 33 1 0.6167 -4.9201 0.8919 34 1 2.8331 -5.9128 -0.7787 35 1 0.8734 -7.3454 -0.8875 36 1 0.8727 -7.3451 0.8924 37 1 3.1478 -8.3324 0.8925 38 1 3.1477 -8.3323 -0.8875 39 1 1.1682 -9.8263 -0.8866 40 1 1.1688 -9.8259 0.8934 41 1 3.7234 -10.6369 0.0032 42 1 2.0608 -14.9728 0.0035 43 1 3.8049 -17.3569 0.0018 44 1 6.1418 -18.0616 0.0029 45 1 7.9493 -16.3943 0.0017 46 1 7.4337 -13.9962 -0.0020 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001175558079.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:43:52 Heat of formation + Delta-G solvation = -45.215214 kcal Electronic energy + Delta-G solvation = -26970.167882 eV Core-core repulsion = 22858.557469 eV Total energy + Delta-G solvation = -4111.610413 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.164 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.60568 -40.56820 -40.15507 -37.81255 -37.61494 -36.19842 -35.71260 -33.31388 -33.17488 -32.58271 -30.52248 -30.00863 -28.58701 -26.68983 -25.29791 -23.91192 -23.16067 -22.64216 -22.17066 -21.22086 -20.99899 -19.91864 -19.45914 -18.17527 -17.85041 -17.30248 -17.18037 -16.77304 -16.60383 -16.46092 -16.03353 -15.83686 -15.73803 -15.23802 -15.14556 -14.98538 -14.87444 -14.69790 -14.47262 -14.28890 -13.86985 -13.56836 -13.39746 -13.21126 -12.87185 -12.76604 -12.60833 -12.57449 -12.46725 -12.43367 -12.12548 -11.89120 -11.84033 -11.50540 -11.44171 -10.92804 -10.36295 -10.32461 -10.02492 -9.34724 -9.25911 -8.79432 -8.47124 -5.96182 -0.27872 0.65685 1.04185 1.39722 1.41849 1.52733 1.77597 1.98434 2.04484 2.19777 2.29133 2.92623 2.94754 3.20301 3.50831 3.59147 3.73938 3.97065 4.09163 4.09571 4.13259 4.20292 4.32374 4.35540 4.46630 4.47955 4.54425 4.56084 4.58225 4.66856 4.74653 4.80626 4.92521 5.07024 5.13523 5.15060 5.25397 5.40101 5.45811 5.53180 5.64531 5.69315 5.87183 6.08520 6.10545 6.27565 6.40295 6.46492 6.59286 6.93543 7.11696 7.55434 8.10422 8.69995 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.030465 B = 0.001245 C = 0.001198 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 918.853611 B =22480.164523 C =23365.937095 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.011 4.011 3 Si 0.993 3.007 4 H -0.271 1.271 5 H -0.271 1.271 6 H -0.272 1.272 7 C -0.337 4.337 8 H 0.079 0.921 9 N -0.572 5.572 10 C 0.436 3.564 11 O -0.624 6.624 12 C 0.064 3.936 13 N -0.683 5.683 14 C 0.062 3.938 15 C -0.116 4.116 16 C 0.126 3.874 17 N -0.712 5.712 18 C 0.584 3.416 19 O -0.562 6.562 20 C 0.005 3.995 21 C -0.120 4.120 22 C -0.146 4.146 23 C -0.075 4.075 24 C -0.151 4.151 25 C -0.087 4.087 26 C -0.141 4.141 27 C 0.102 3.898 28 N -0.567 5.567 29 H 0.430 0.570 30 H 0.278 0.722 31 H 0.397 0.603 32 H 0.067 0.933 33 H 0.104 0.896 34 H 0.345 0.655 35 H 0.043 0.957 36 H 0.080 0.920 37 H 0.080 0.920 38 H 0.078 0.922 39 H 0.069 0.931 40 H 0.069 0.931 41 H 0.411 0.589 42 H 0.153 0.847 43 H 0.137 0.863 44 H 0.147 0.853 45 H 0.154 0.846 46 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.201 -33.099 -0.990 34.368 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.211 4.211 3 Si 0.816 3.184 4 H -0.196 1.196 5 H -0.195 1.195 6 H -0.197 1.197 7 C -0.467 4.467 8 H 0.097 0.903 9 N -0.210 5.210 10 C 0.224 3.776 11 O -0.510 6.510 12 C -0.068 4.068 13 N -0.316 5.316 14 C -0.067 4.067 15 C -0.154 4.154 16 C 0.002 3.998 17 N -0.363 5.363 18 C 0.371 3.629 19 O -0.441 6.441 20 C -0.105 4.105 21 C -0.147 4.147 22 C -0.150 4.150 23 C -0.093 4.093 24 C -0.170 4.170 25 C -0.106 4.106 26 C -0.162 4.162 27 C -0.008 4.008 28 N -0.173 5.173 29 H 0.271 0.729 30 H 0.087 0.913 31 H 0.230 0.770 32 H 0.085 0.915 33 H 0.122 0.878 34 H 0.164 0.836 35 H 0.061 0.939 36 H 0.098 0.902 37 H 0.098 0.902 38 H 0.097 0.903 39 H 0.088 0.912 40 H 0.088 0.912 41 H 0.247 0.753 42 H 0.171 0.829 43 H 0.155 0.845 44 H 0.165 0.835 45 H 0.172 0.828 46 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 9.084 -32.873 -0.307 34.107 hybrid contribution -0.121 1.558 -0.860 1.784 sum 8.963 -31.315 -1.167 32.593 Atomic orbital electron populations 1.69665 1.06865 1.29397 1.50158 1.26035 0.96517 1.02407 0.96158 0.84993 0.77776 0.76628 0.78975 1.19627 1.19504 1.19716 1.19651 0.92762 0.84081 1.50175 0.90251 1.41932 1.09347 1.04729 1.64950 1.20901 0.88284 0.86206 0.82253 1.90482 1.15827 1.87982 1.56746 1.21536 0.94046 0.88084 1.03156 1.60056 1.19164 1.00915 1.51433 1.21906 0.95802 0.87251 1.01759 1.21599 0.98431 0.91279 1.04117 1.21311 0.91105 0.84630 1.02737 1.45768 1.11352 1.04850 1.74358 1.17325 0.87029 0.82296 0.76265 1.90845 1.17350 1.84135 1.51763 1.19940 0.82817 0.94813 1.12929 1.21088 0.98712 0.90994 1.03929 1.18467 0.92458 0.94606 1.09453 1.20703 0.97921 0.93049 0.97670 1.21021 0.92040 1.01097 1.02813 1.21327 1.00815 0.91545 0.96912 1.20434 0.92177 0.97461 1.06118 1.18637 0.94914 0.84318 1.02963 1.41823 1.04133 1.07727 1.63634 0.72893 0.91271 0.76963 0.91503 0.87822 0.83611 0.93915 0.90186 0.90155 0.90286 0.91221 0.91236 0.75255 0.82927 0.84511 0.83516 0.82820 0.83823 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.44 13.05 21.66 0.28 -49.16 16 2 C -0.01 -0.60 5.50 84.93 0.47 -0.13 16 3 Si 0.99 42.58 29.55 68.60 2.03 44.61 16 4 H -0.27 -11.45 7.11 99.48 0.71 -10.74 16 5 H -0.27 -10.93 7.11 99.48 0.71 -10.22 16 6 H -0.27 -11.54 7.11 99.48 0.71 -10.84 16 7 C -0.34 -19.08 9.68 84.04 0.81 -18.26 16 8 H 0.08 4.77 7.16 -2.91 -0.02 4.75 16 9 N -0.57 -29.18 5.29 -306.99 -1.62 -30.80 16 10 C 0.44 20.47 7.82 87.66 0.69 21.16 16 11 O -0.62 -34.09 15.78 -3.06 -0.05 -34.13 16 12 C 0.06 2.12 6.17 85.56 0.53 2.65 16 13 N -0.68 -19.93 6.13 -517.92 -3.17 -23.10 16 14 C 0.06 1.24 5.68 86.31 0.49 1.73 16 15 C -0.12 -1.78 5.59 30.60 0.17 -1.61 16 16 C 0.13 1.97 5.67 86.38 0.49 2.46 16 17 N -0.71 -10.31 5.55 -466.72 -2.59 -12.90 16 18 C 0.58 11.91 7.80 86.56 0.68 12.59 16 19 O -0.56 -15.85 16.84 -4.19 -0.07 -15.92 16 20 C 0.00 0.09 6.97 39.91 0.28 0.36 16 21 C -0.12 -2.31 10.53 22.55 0.24 -2.07 16 22 C -0.15 -2.52 6.16 -21.36 -0.13 -2.65 16 23 C -0.07 -1.00 10.06 22.30 0.22 -0.77 16 24 C -0.15 -1.49 9.96 22.02 0.22 -1.27 16 25 C -0.09 -0.77 10.01 22.30 0.22 -0.55 16 26 C -0.14 -1.53 10.08 22.37 0.23 -1.30 16 27 C 0.10 1.53 7.25 39.14 0.28 1.81 16 28 N -0.57 -7.28 6.07 -177.18 -1.08 -8.36 16 29 H 0.43 2.78 8.12 -92.71 -0.75 2.02 16 30 H 0.28 14.01 8.31 -92.71 -0.77 13.24 16 31 H 0.40 19.18 7.90 -92.70 -0.73 18.45 16 32 H 0.07 1.93 8.14 -2.38 -0.02 1.91 16 33 H 0.10 3.11 8.14 -2.39 -0.02 3.09 16 34 H 0.35 10.44 8.43 -89.70 -0.76 9.68 16 35 H 0.04 0.78 8.14 -2.39 -0.02 0.76 16 36 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 37 H 0.08 1.29 8.14 -2.38 -0.02 1.27 16 38 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 39 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 40 H 0.07 1.20 8.14 -2.38 -0.02 1.18 16 41 H 0.41 3.55 7.53 -92.71 -0.70 2.85 16 42 H 0.15 2.85 8.06 -2.91 -0.02 2.82 16 43 H 0.14 1.35 8.06 -2.91 -0.02 1.33 16 44 H 0.15 0.72 8.06 -2.91 -0.02 0.69 16 45 H 0.15 0.51 8.06 -2.91 -0.02 0.48 16 46 H 0.14 0.88 8.06 -2.91 -0.02 0.85 16 Total: -1.00 -76.01 397.39 -2.27 -78.28 By element: Atomic # 1 Polarization: 39.23 SS G_CDS: -1.88 Total: 37.34 kcal Atomic # 6 Polarization: 8.26 SS G_CDS: 5.88 Total: 14.14 kcal Atomic # 7 Polarization: -116.14 SS G_CDS: -8.18 Total: -124.32 kcal Atomic # 8 Polarization: -49.93 SS G_CDS: -0.12 Total: -50.05 kcal Atomic # 14 Polarization: 42.58 SS G_CDS: 2.03 Total: 44.61 kcal Total: -76.01 -2.27 -78.28 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001175558079.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.063 kcal (2) G-P(sol) polarization free energy of solvation -76.006 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.942 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.273 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.279 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.215 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds