Wall clock time and date at job start Wed Apr 1 2020 02:33:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86790 * 120.00316 * 2 1 4 4 H 1.48503 * 109.47247 * 270.00054 * 3 2 1 5 5 H 1.48497 * 109.47376 * 29.99800 * 3 2 1 6 6 H 1.48502 * 109.47137 * 149.99988 * 3 2 1 7 7 C 1.37879 * 119.99736 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00016 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99785 * 359.97438 * 7 2 1 10 10 N 1.46901 * 109.46769 * 180.02562 * 9 7 2 11 11 C 1.46903 * 110.99898 * 170.00418 * 10 9 7 12 12 C 1.53238 * 109.34298 * 187.25496 * 11 10 9 13 13 N 1.47083 * 108.51656 * 306.17019 * 12 11 10 14 14 C 1.34779 * 120.87964 * 231.18146 * 13 12 11 15 15 O 1.21282 * 119.99926 * 0.02562 * 14 13 12 16 16 C 1.50699 * 120.00033 * 180.02562 * 14 13 12 17 17 C 1.50706 * 109.46817 * 180.02562 * 16 14 13 18 18 N 1.30250 * 126.09399 * 90.02671 * 17 16 14 19 19 N 1.39865 * 110.08524 * 179.97438 * 18 17 16 20 20 H 0.96995 * 125.47582 * 180.02562 * 19 18 17 21 21 C 1.37222 * 109.05310 * 359.97438 * 19 18 17 22 22 C 1.39272 * 133.69270 * 179.97438 * 21 19 18 23 23 C 1.36516 * 120.07013 * 179.97438 * 22 21 19 24 24 C 1.39410 * 120.76722 * 0.02725 * 23 22 21 25 25 O 1.35978 * 119.81648 * 179.97438 * 24 23 22 26 26 C 1.37870 * 120.36821 * 359.97438 * 24 23 22 27 27 C 1.39999 * 119.47851 * 359.72281 * 26 24 23 28 28 C 1.47078 * 118.24187 * 51.46008 * 13 12 11 29 29 C 1.46898 * 111.00110 * 294.30369 * 10 9 7 30 30 H 0.96998 * 119.99610 * 359.97438 * 1 2 3 31 31 H 1.09005 * 109.47065 * 60.00583 * 9 7 2 32 32 H 1.08992 * 109.47429 * 300.00267 * 9 7 2 33 33 H 1.09006 * 109.49466 * 67.29008 * 11 10 9 34 34 H 1.09007 * 109.49054 * 307.21357 * 11 10 9 35 35 H 1.08994 * 109.63225 * 186.46197 * 12 11 10 36 36 H 1.09003 * 109.62566 * 65.87665 * 12 11 10 37 37 H 1.09000 * 109.46670 * 60.00406 * 16 14 13 38 38 H 1.09000 * 109.47247 * 300.00119 * 16 14 13 39 39 H 1.08002 * 119.96365 * 0.02562 * 22 21 19 40 40 H 1.07997 * 119.61692 * 180.02562 * 23 22 21 41 41 H 0.96699 * 114.00176 * 89.99684 * 25 24 23 42 42 H 1.07994 * 120.26122 * 180.02562 * 26 24 23 43 43 H 1.09001 * 109.63030 * 68.24322 * 28 13 12 44 44 H 1.08996 * 109.63083 * 188.83116 * 28 13 12 45 45 H 1.09006 * 109.49646 * 292.70538 * 29 10 9 46 46 H 1.09001 * 109.49530 * 52.76070 * 29 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4468 2.6526 0.7000 6 1 3.5468 1.4400 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 7 2.2055 -3.6157 -0.0005 11 6 1.5210 -4.8935 0.2375 12 6 2.5634 -6.0033 0.4104 13 7 3.4613 -5.9863 -0.7545 14 6 3.7116 -7.1124 -1.4514 15 8 3.1935 -8.1580 -1.1208 16 6 4.6354 -7.0725 -2.6414 17 6 4.7447 -8.4517 -3.2390 18 7 3.9821 -8.9463 -4.1719 19 7 4.3798 -10.2525 -4.4750 20 1 3.9656 -10.8278 -5.1371 21 6 5.4509 -10.5891 -3.6861 22 6 6.2330 -11.7349 -3.5634 23 6 7.2590 -11.7697 -2.6635 24 6 7.5385 -10.6670 -1.8577 25 8 8.5648 -10.7229 -0.9674 26 6 6.7802 -9.5200 -1.9584 27 6 5.7289 -9.4680 -2.8815 28 6 4.0837 -4.7092 -1.1349 29 6 2.9766 -3.6491 -1.2504 30 1 -0.4849 0.8401 0.0004 31 1 0.6240 -2.5567 -0.8904 32 1 0.6246 -2.5571 0.8896 33 1 0.8793 -5.1263 -0.6124 34 1 0.9157 -4.8191 1.1411 35 1 2.0628 -6.9695 0.4727 36 1 3.1390 -5.8266 1.3190 37 1 5.6219 -6.7343 -2.3243 38 1 4.2376 -6.3842 -3.3872 39 1 6.0282 -12.5966 -4.1815 40 1 7.8611 -12.6619 -2.5748 41 1 9.4132 -10.4286 -1.3261 42 1 6.9985 -8.6666 -1.3336 43 1 4.8025 -4.4105 -0.3719 44 1 4.5885 -4.8193 -2.0946 45 1 2.3148 -3.8993 -2.0796 46 1 3.4268 -2.6721 -1.4263 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001187235705.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:33:34 Heat of formation + Delta-G solvation = 21.873108 kcal Electronic energy + Delta-G solvation = -29316.723436 eV Core-core repulsion = 25208.022191 eV Total energy + Delta-G solvation = -4108.701245 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.164 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.63264 -39.93909 -38.83948 -37.52340 -35.83418 -34.42363 -33.58203 -32.44863 -31.16129 -30.50349 -29.47730 -28.53462 -27.78794 -25.42014 -23.52242 -23.31901 -22.53058 -22.24634 -21.12199 -20.02561 -18.79921 -18.46528 -18.11659 -17.17301 -16.65116 -16.40553 -15.85223 -15.74123 -15.46949 -15.02665 -14.79402 -14.66096 -14.43813 -14.26878 -14.04388 -13.68405 -13.53942 -13.30650 -13.24987 -13.07133 -12.31765 -12.29620 -12.01744 -11.89726 -11.80654 -11.31034 -11.28125 -11.08321 -10.98235 -10.77877 -10.67802 -10.63742 -10.55552 -10.44224 -9.91658 -9.67718 -9.29419 -8.98789 -8.53148 -8.44795 -8.14709 -7.34808 -6.07843 -4.10068 0.58133 1.04586 2.09454 2.38099 2.67114 3.11133 3.27977 3.33389 3.35002 3.38361 3.85255 4.11290 4.24292 4.37037 4.38330 4.56194 4.71301 4.78309 4.98232 5.05616 5.11784 5.21973 5.27116 5.29055 5.37092 5.40739 5.51302 5.57241 5.63664 5.75121 5.83032 5.86072 6.02452 6.06653 6.08574 6.27706 6.29226 6.43340 6.44684 6.65762 6.98909 7.20334 7.26252 7.31793 7.39156 7.50560 7.72304 7.99724 8.10141 8.22428 8.45284 8.97069 9.54510 11.02928 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.021036 B = 0.002078 C = 0.002031 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1330.708079 B =13471.488579 C =13780.036067 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.055 3.945 3 Si 0.899 3.101 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.272 1.272 7 C -0.510 4.510 8 H 0.064 0.936 9 C 0.193 3.807 10 N -0.535 5.535 11 C 0.041 3.959 12 C 0.119 3.881 13 N -0.606 5.606 14 C 0.519 3.481 15 O -0.540 6.540 16 C -0.065 4.065 17 C 0.127 3.873 18 N -0.232 5.232 19 N -0.507 5.507 20 H 0.441 0.559 21 C 0.124 3.876 22 C -0.127 4.127 23 C -0.092 4.092 24 C 0.062 3.938 25 O -0.495 6.495 26 C -0.061 4.061 27 C -0.148 4.148 28 C 0.106 3.894 29 C 0.049 3.951 30 H 0.262 0.738 31 H -0.009 1.009 32 H 0.032 0.968 33 H 0.027 0.973 34 H 0.081 0.919 35 H 0.087 0.913 36 H 0.074 0.926 37 H 0.118 0.882 38 H 0.117 0.883 39 H 0.130 0.870 40 H 0.135 0.865 41 H 0.386 0.614 42 H 0.134 0.866 43 H 0.079 0.921 44 H 0.081 0.919 45 H 0.026 0.974 46 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.286 -21.053 -8.480 27.935 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.146 4.146 3 Si 0.726 3.274 4 H -0.207 1.207 5 H -0.213 1.213 6 H -0.197 1.197 7 C -0.548 4.548 8 H 0.082 0.918 9 C 0.069 3.931 10 N -0.261 5.261 11 C -0.089 4.089 12 C -0.003 4.003 13 N -0.340 5.340 14 C 0.306 3.694 15 O -0.417 6.417 16 C -0.107 4.107 17 C -0.051 4.051 18 N -0.046 5.046 19 N -0.222 5.222 20 H 0.286 0.714 21 C 0.008 3.992 22 C -0.149 4.149 23 C -0.113 4.113 24 C 0.016 3.984 25 O -0.304 6.304 26 C -0.082 4.082 27 C -0.156 4.156 28 C -0.017 4.017 29 C -0.080 4.080 30 H 0.071 0.929 31 H 0.009 0.991 32 H 0.050 0.950 33 H 0.045 0.955 34 H 0.100 0.900 35 H 0.106 0.894 36 H 0.092 0.908 37 H 0.136 0.864 38 H 0.135 0.865 39 H 0.148 0.852 40 H 0.153 0.847 41 H 0.240 0.760 42 H 0.152 0.848 43 H 0.098 0.902 44 H 0.099 0.901 45 H 0.044 0.956 46 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 14.720 -21.405 -8.328 27.280 hybrid contribution 0.462 0.584 -0.832 1.116 sum 15.181 -20.822 -9.160 27.348 Atomic orbital electron populations 1.69961 1.06104 1.26872 1.50708 1.25007 0.94871 0.99391 0.95378 0.86490 0.79801 0.83057 0.78017 1.20740 1.21279 1.19730 1.21128 0.93447 0.89836 1.50403 0.91771 1.19730 0.90006 0.87155 0.96255 1.62083 1.28105 1.02722 1.33158 1.22411 0.94970 0.90514 1.00967 1.21758 0.91678 0.99501 0.87360 1.48196 1.46927 1.08433 1.30457 1.20163 0.82089 0.83546 0.83643 1.90714 1.51810 1.30107 1.69058 1.20118 1.02074 0.91600 0.96863 1.22664 0.92415 0.95445 0.94623 1.76554 1.19588 0.92136 1.16326 1.45871 1.27803 1.11935 1.36573 0.71447 1.18842 0.90880 0.95693 0.93801 1.19642 0.96946 0.96085 1.02251 1.20938 0.97606 0.98722 0.94079 1.18023 0.93160 0.93273 0.93958 1.84918 1.19091 1.88638 1.37732 1.20831 0.93827 0.97815 0.95713 1.19495 1.00316 0.94113 1.01707 1.22171 0.96306 0.82632 1.00542 1.22423 0.95094 0.99024 0.91483 0.92860 0.99096 0.95020 0.95521 0.90049 0.89449 0.90812 0.86426 0.86484 0.85180 0.84701 0.75964 0.84798 0.90248 0.90115 0.95579 0.88386 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.08 13.29 55.43 0.74 -25.35 16 2 C 0.06 1.51 5.46 -17.82 -0.10 1.42 16 3 Si 0.90 20.89 29.54 -169.99 -5.02 15.87 16 4 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 5 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 6 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 7 C -0.51 -13.63 8.41 -34.44 -0.29 -13.92 16 8 H 0.06 1.67 7.13 -52.49 -0.37 1.29 16 9 C 0.19 4.84 4.72 -4.97 -0.02 4.82 16 10 N -0.54 -10.84 4.62 -235.45 -1.09 -11.92 16 11 C 0.04 0.72 5.62 -3.70 -0.02 0.70 16 12 C 0.12 1.84 6.60 -3.60 -0.02 1.82 16 13 N -0.61 -8.74 3.00 -172.18 -0.52 -9.26 16 14 C 0.52 7.58 7.70 -10.99 -0.08 7.49 16 15 O -0.54 -9.92 15.49 5.56 0.09 -9.83 16 16 C -0.06 -0.71 4.66 -29.03 -0.14 -0.84 16 17 C 0.13 1.62 5.92 -80.18 -0.48 1.14 16 18 N -0.23 -3.10 12.55 34.84 0.44 -2.67 16 19 N -0.51 -5.40 7.38 32.38 0.24 -5.16 16 20 H 0.44 3.19 8.96 -182.78 -1.64 1.56 16 21 C 0.12 1.33 7.33 -84.11 -0.62 0.71 16 22 C -0.13 -1.04 10.01 -39.82 -0.40 -1.44 16 23 C -0.09 -0.74 9.90 -39.77 -0.39 -1.13 16 24 C 0.06 0.57 6.69 -39.28 -0.26 0.31 16 25 O -0.49 -3.99 13.49 -19.67 -0.27 -4.25 16 26 C -0.06 -0.63 10.05 -39.06 -0.39 -1.02 16 27 C -0.15 -1.77 6.33 -105.21 -0.67 -2.43 16 28 C 0.11 1.38 6.53 -3.36 -0.02 1.35 16 29 C 0.05 0.85 5.47 -3.46 -0.02 0.83 16 30 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 31 H -0.01 -0.24 8.13 -51.93 -0.42 -0.66 16 32 H 0.03 0.85 7.97 -51.93 -0.41 0.44 16 33 H 0.03 0.50 8.14 -51.93 -0.42 0.07 16 34 H 0.08 1.41 7.99 -51.93 -0.41 0.99 16 35 H 0.09 1.37 7.06 -51.93 -0.37 1.01 16 36 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 37 H 0.12 0.90 7.99 -51.93 -0.41 0.48 16 38 H 0.12 1.11 7.67 -51.93 -0.40 0.71 16 39 H 0.13 0.70 8.06 -52.49 -0.42 0.28 16 40 H 0.14 0.76 8.06 -52.49 -0.42 0.33 16 41 H 0.39 1.15 9.06 45.56 0.41 1.56 16 42 H 0.13 1.21 8.06 -52.49 -0.42 0.79 16 43 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 44 H 0.08 0.76 6.02 -51.93 -0.31 0.45 16 45 H 0.03 0.47 8.14 -51.93 -0.42 0.05 16 46 H 0.10 1.79 6.67 -51.93 -0.35 1.44 16 LS Contribution 381.77 15.07 5.75 5.75 Total: -1.00 -35.89 381.77 -10.34 -46.23 By element: Atomic # 1 Polarization: 7.57 SS G_CDS: -6.78 Total: 0.79 kcal Atomic # 6 Polarization: 3.72 SS G_CDS: -3.92 Total: -0.20 kcal Atomic # 7 Polarization: -54.17 SS G_CDS: -0.19 Total: -54.36 kcal Atomic # 8 Polarization: -13.91 SS G_CDS: -0.18 Total: -14.08 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -5.02 Total: 15.87 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -35.89 -10.34 -46.23 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001187235705.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.102 kcal (2) G-P(sol) polarization free energy of solvation -35.886 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.216 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.343 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.229 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.873 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds