Wall clock time and date at job start Wed Apr 1 2020 02:01:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35899 * 116.99726 * 2 1 4 4 C 1.38760 * 120.05758 * 0.25205 * 3 2 1 5 5 C 1.38123 * 119.94553 * 180.28078 * 4 3 2 6 6 C 1.38288 * 120.05293 * 359.71798 * 5 4 3 7 7 C 1.38241 * 120.11546 * 0.02769 * 6 5 4 8 8 C 1.38168 * 120.05250 * 359.97438 * 7 6 5 9 9 C 1.50707 * 120.02683 * 180.02562 * 8 7 6 10 10 H 1.08995 * 109.47178 * 135.78493 * 9 8 7 11 11 C 1.52995 * 109.47271 * 15.77606 * 9 8 7 12 12 N 1.46498 * 109.47422 * 185.00302 * 11 9 8 13 13 C 1.34777 * 120.00175 * 180.02562 * 12 11 9 14 14 O 1.21275 * 120.00140 * 359.97438 * 13 12 11 15 15 C 1.50700 * 120.00070 * 180.02562 * 13 12 11 16 16 C 1.50688 * 109.47309 * 179.97438 * 15 13 12 17 17 C 1.41385 * 126.58113 * 89.99501 * 16 15 13 18 18 C 1.34517 * 106.84491 * 179.97438 * 17 16 15 19 19 O 1.34308 * 108.41555 * 0.02562 * 18 17 16 20 20 C 1.34300 * 109.47863 * 359.76949 * 19 18 17 21 21 N 1.46499 * 109.46683 * 255.77909 * 9 8 7 22 22 C 1.36941 * 120.00387 * 57.74753 * 21 9 8 23 23 H 1.08004 * 119.99718 * 6.00193 * 22 21 9 24 24 C 1.38813 * 120.00171 * 186.01116 * 22 21 9 25 25 N 1.31615 * 120.00139 * 359.97438 * 24 22 21 26 26 Si 1.86803 * 119.99595 * 179.97438 * 24 22 21 27 27 H 1.48498 * 109.47405 * 359.97438 * 26 24 22 28 28 H 1.48499 * 109.47145 * 119.99951 * 26 24 22 29 29 H 1.48504 * 109.46889 * 239.99417 * 26 24 22 30 30 H 1.09003 * 109.47388 * 60.00632 * 1 2 3 31 31 H 1.09004 * 109.46672 * 180.02562 * 1 2 3 32 32 H 1.08999 * 109.47218 * 299.99890 * 1 2 3 33 33 H 1.07998 * 120.02904 * 0.02562 * 4 3 2 34 34 H 1.07997 * 119.97553 * 179.74298 * 5 4 3 35 35 H 1.07999 * 119.94522 * 180.02562 * 6 5 4 36 36 H 1.07999 * 119.97950 * 180.02562 * 7 6 5 37 37 H 1.09002 * 109.47227 * 305.00798 * 11 9 8 38 38 H 1.09004 * 109.47186 * 65.00216 * 11 9 8 39 39 H 0.96998 * 119.99632 * 0.02562 * 12 11 9 40 40 H 1.09001 * 109.46913 * 300.00300 * 15 13 12 41 41 H 1.09004 * 109.47082 * 59.99442 * 15 13 12 42 42 H 1.08004 * 126.57961 * 359.93631 * 17 16 15 43 43 H 1.07995 * 125.79071 * 179.97438 * 18 17 16 44 44 H 1.08001 * 125.79077 * 180.23463 * 20 19 18 45 45 H 0.97003 * 120.00505 * 237.74113 * 21 9 8 46 46 H 0.97003 * 119.99836 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 1.2913 2.3754 0.0053 5 6 1.9207 3.6048 -0.0006 6 6 3.3017 3.6759 -0.0058 7 6 4.0559 2.5173 -0.0058 8 6 3.4310 1.2850 0.0000 9 6 4.2537 0.0223 0.0006 10 1 3.8376 -0.6821 0.7208 11 6 5.6966 0.3538 0.3866 12 7 6.5221 -0.8510 0.2716 13 6 7.8367 -0.7976 0.5639 14 8 8.3364 0.2479 0.9217 15 6 8.6859 -2.0368 0.4451 16 6 10.1070 -1.7103 0.8253 17 6 10.6723 -1.7884 2.1189 18 6 11.9583 -1.4103 2.0058 19 8 12.2003 -1.1085 0.7197 20 6 11.0825 -1.2930 -0.0016 21 7 4.2311 -0.5759 -1.3365 22 6 4.6642 0.1456 -2.4168 23 1 5.1123 1.1177 -2.2725 24 6 4.5273 -0.3723 -3.6974 25 7 3.9817 -1.5571 -3.8733 26 14 5.1176 0.6123 -5.1711 27 1 5.6883 1.9026 -4.7079 28 1 6.1595 -0.1584 -5.8962 29 1 3.9738 0.8755 -6.0808 30 1 -0.3634 0.5137 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5138 0.8900 33 1 0.2127 2.3204 0.0098 34 1 1.3338 4.5114 -0.0007 35 1 3.7920 4.6381 -0.0100 36 1 5.1343 2.5753 -0.0095 37 1 6.0833 1.1243 -0.2805 38 1 5.7237 0.7161 1.4143 39 1 6.1225 -1.6871 -0.0149 40 1 8.2990 -2.8077 1.1115 41 1 8.6591 -2.3985 -0.5829 42 1 10.1682 -2.0927 3.0243 43 1 12.6744 -1.3575 2.8125 44 1 10.9831 -1.1318 -1.0649 45 1 3.9093 -1.4830 -1.4567 46 1 3.8857 -1.9188 -4.7682 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001198685582.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:01:31 Heat of formation + Delta-G solvation = -12.040187 kcal Electronic energy + Delta-G solvation = -29900.017034 eV Core-core repulsion = 25757.552447 eV Total energy + Delta-G solvation = -4142.464587 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.157 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.44724 -39.89333 -39.04796 -37.17842 -35.79684 -33.82455 -33.33780 -31.98493 -30.33852 -29.89447 -29.48871 -28.23887 -27.10837 -26.30890 -24.26895 -22.63184 -21.60965 -21.51605 -20.78395 -19.85732 -19.61112 -17.76560 -17.42849 -17.16859 -16.65582 -15.77823 -15.68011 -15.55263 -15.21773 -15.10382 -15.03033 -14.59805 -14.49836 -14.00993 -13.89900 -13.37645 -13.12635 -12.99827 -12.77218 -12.73427 -12.69990 -12.21106 -12.19440 -11.88248 -11.63526 -11.54990 -11.31043 -10.93620 -10.88442 -10.72078 -10.52099 -10.42760 -9.95978 -9.78954 -9.71835 -9.30790 -8.96967 -8.43384 -8.41801 -8.36788 -7.65814 -7.01849 -5.79919 -3.09198 1.80988 1.86864 1.94475 2.64714 3.13351 3.22744 3.40859 3.48807 3.50144 3.72861 3.86523 4.24269 4.59808 4.83234 4.90123 5.10048 5.14670 5.18178 5.32984 5.35732 5.43017 5.46785 5.49118 5.56669 5.64458 5.67185 5.72127 5.75958 5.77027 5.88887 5.94077 6.03188 6.10119 6.12325 6.23577 6.41276 6.48541 6.56711 6.64226 6.77332 6.89082 7.02873 7.09977 7.19233 7.26863 7.73221 7.88552 8.10543 8.36852 8.76402 9.50365 10.00389 10.37774 11.41793 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.010056 B = 0.003272 C = 0.002844 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2783.715875 B = 8556.663724 C = 9842.354231 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.301 6.301 3 C 0.145 3.855 4 C -0.216 4.216 5 C -0.095 4.095 6 C -0.161 4.161 7 C -0.080 4.080 8 C -0.093 4.093 9 C 0.207 3.793 10 H 0.071 0.929 11 C 0.109 3.891 12 N -0.703 5.703 13 C 0.510 3.490 14 O -0.549 6.549 15 C -0.073 4.073 16 C -0.156 4.156 17 C -0.198 4.198 18 C -0.051 4.051 19 O -0.179 6.179 20 C -0.029 4.029 21 N -0.704 5.704 22 C -0.228 4.228 23 H 0.070 0.930 24 C -0.007 4.007 25 N -0.929 5.929 26 Si 0.897 3.103 27 H -0.280 1.280 28 H -0.292 1.292 29 H -0.293 1.293 30 H 0.051 0.949 31 H 0.094 0.906 32 H 0.046 0.954 33 H 0.119 0.881 34 H 0.114 0.886 35 H 0.115 0.885 36 H 0.128 0.872 37 H 0.069 0.931 38 H 0.054 0.946 39 H 0.403 0.597 40 H 0.099 0.901 41 H 0.103 0.897 42 H 0.144 0.856 43 H 0.199 0.801 44 H 0.201 0.799 45 H 0.387 0.613 46 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.347 0.010 12.145 12.370 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.214 6.214 3 C 0.099 3.901 4 C -0.235 4.235 5 C -0.114 4.114 6 C -0.180 4.180 7 C -0.099 4.099 8 C -0.097 4.097 9 C 0.096 3.904 10 H 0.089 0.911 11 C -0.017 4.017 12 N -0.354 5.354 13 C 0.296 3.704 14 O -0.428 6.428 15 C -0.113 4.113 16 C -0.158 4.158 17 C -0.217 4.217 18 C -0.118 4.118 19 O -0.075 6.075 20 C -0.096 4.096 21 N -0.343 5.343 22 C -0.359 4.359 23 H 0.088 0.912 24 C -0.203 4.203 25 N -0.577 5.577 26 Si 0.729 3.271 27 H -0.205 1.205 28 H -0.220 1.220 29 H -0.220 1.220 30 H 0.070 0.930 31 H 0.113 0.887 32 H 0.065 0.935 33 H 0.137 0.863 34 H 0.132 0.868 35 H 0.133 0.867 36 H 0.146 0.854 37 H 0.087 0.913 38 H 0.072 0.928 39 H 0.238 0.762 40 H 0.117 0.883 41 H 0.121 0.879 42 H 0.162 0.838 43 H 0.215 0.785 44 H 0.217 0.783 45 H 0.222 0.778 46 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 3.091 0.748 12.133 12.543 hybrid contribution -0.709 0.139 -1.246 1.440 sum 2.383 0.886 10.887 11.180 Atomic orbital electron populations 1.22943 0.79615 1.03353 1.00526 1.86151 1.20166 1.26743 1.88318 1.18746 0.91744 0.83893 0.95671 1.21089 0.99349 0.92647 1.10400 1.20735 0.94614 0.96473 0.99562 1.20940 0.93858 0.98130 1.05026 1.21022 1.00060 0.91246 0.97550 1.19861 0.90865 0.96650 1.02298 1.19170 0.90454 0.91106 0.89682 0.91084 1.21932 0.92777 0.87483 0.99549 1.45725 1.08263 1.13867 1.67498 1.20405 0.82376 0.90153 0.77481 1.90665 1.72749 1.31870 1.47473 1.20003 0.90231 0.96910 1.04173 1.19832 0.95599 1.06736 0.93633 1.21656 0.94784 1.07061 0.98198 1.23883 0.98143 1.05179 0.84636 1.84041 1.36388 1.67832 1.19235 1.23836 0.83802 1.04164 0.97825 1.42360 1.76062 1.15263 1.00590 1.19134 1.31242 1.00374 0.85145 0.91240 1.24675 1.01342 0.97083 0.97166 1.69664 1.49768 1.17221 1.21065 0.86263 0.77844 0.79475 0.83558 1.20536 1.21965 1.22007 0.93048 0.88741 0.93512 0.86309 0.86781 0.86700 0.85439 0.91315 0.92802 0.76203 0.88305 0.87924 0.83796 0.78468 0.78278 0.77849 0.93704 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.40 9.81 101.05 0.99 1.39 16 2 O -0.30 -5.32 9.82 -19.42 -0.19 -5.51 16 3 C 0.15 2.64 6.66 -39.21 -0.26 2.38 16 4 C -0.22 -3.43 9.04 -39.43 -0.36 -3.78 16 5 C -0.10 -1.43 10.04 -39.60 -0.40 -1.83 16 6 C -0.16 -2.54 10.04 -39.56 -0.40 -2.94 16 7 C -0.08 -1.41 8.94 -39.61 -0.35 -1.76 16 8 C -0.09 -1.75 4.72 -104.47 -0.49 -2.24 16 9 C 0.21 3.88 2.69 -69.08 -0.19 3.69 16 10 H 0.07 1.25 7.99 -51.93 -0.41 0.84 16 11 C 0.11 1.96 4.01 -4.05 -0.02 1.94 16 12 N -0.70 -11.76 5.39 -60.30 -0.32 -12.09 16 13 C 0.51 8.63 7.82 -10.98 -0.09 8.55 16 14 O -0.55 -11.28 16.03 5.56 0.09 -11.19 16 15 C -0.07 -0.96 6.22 -29.04 -0.18 -1.14 16 16 C -0.16 -2.16 4.66 -104.75 -0.49 -2.65 16 17 C -0.20 -2.49 10.87 -39.70 -0.43 -2.92 16 18 C -0.05 -0.58 12.09 29.42 0.36 -0.23 16 19 O -0.18 -2.38 10.65 5.71 0.06 -2.32 16 20 C -0.03 -0.38 12.01 29.42 0.35 -0.03 16 21 N -0.70 -15.82 4.72 -54.55 -0.26 -16.08 16 22 C -0.23 -5.86 8.83 -15.06 -0.13 -5.99 16 23 H 0.07 1.83 7.10 -52.48 -0.37 1.46 16 24 C -0.01 -0.18 5.50 -17.43 -0.10 -0.28 16 25 N -0.93 -26.54 13.07 55.49 0.73 -25.82 16 26 Si 0.90 22.20 29.55 -169.99 -5.02 17.18 16 27 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 28 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 29 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16 30 H 0.05 0.66 7.67 -51.93 -0.40 0.26 16 31 H 0.09 1.04 8.14 -51.93 -0.42 0.61 16 32 H 0.05 0.50 7.65 -51.93 -0.40 0.10 16 33 H 0.12 1.58 6.30 -52.49 -0.33 1.25 16 34 H 0.11 1.38 8.06 -52.49 -0.42 0.95 16 35 H 0.11 1.53 8.06 -52.49 -0.42 1.11 16 36 H 0.13 2.20 5.83 -52.49 -0.31 1.89 16 37 H 0.07 1.40 5.80 -51.93 -0.30 1.09 16 38 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 39 H 0.40 6.33 8.14 -40.82 -0.33 6.00 16 40 H 0.10 1.06 8.14 -51.93 -0.42 0.63 16 41 H 0.10 1.23 8.14 -51.93 -0.42 0.81 16 42 H 0.14 1.55 8.06 -52.48 -0.42 1.12 16 43 H 0.20 1.43 8.06 -52.49 -0.42 1.01 16 44 H 0.20 2.22 8.06 -52.49 -0.42 1.79 16 45 H 0.39 9.33 8.04 -40.82 -0.33 9.00 16 46 H 0.25 7.12 8.31 -40.82 -0.34 6.78 16 LS Contribution 390.20 15.07 5.88 5.88 Total: -1.00 -33.51 390.20 -7.34 -40.85 By element: Atomic # 1 Polarization: 23.04 SS G_CDS: -6.12 Total: 16.91 kcal Atomic # 6 Polarization: -5.65 SS G_CDS: -2.18 Total: -7.83 kcal Atomic # 7 Polarization: -54.12 SS G_CDS: 0.14 Total: -53.98 kcal Atomic # 8 Polarization: -18.98 SS G_CDS: -0.04 Total: -19.02 kcal Atomic # 14 Polarization: 22.20 SS G_CDS: -5.02 Total: 17.18 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -33.51 -7.34 -40.85 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001198685582.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.812 kcal (2) G-P(sol) polarization free energy of solvation -33.512 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.700 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.340 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.852 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.040 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds